RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 NBPF1Q3BBV0 1214 aa20.19■□□□□ 0.82
USP39-220ENST00000613444 ADGRF5Q8IZF2 1346 aa20.19■□□□□ 0.82
USP39-220ENST00000613444 ROCK2O75116 1388 aaKnown RBP20.18■□□□□ 0.82
USP39-220ENST00000613444 TNRQ92752 1358 aa20.18■□□□□ 0.82
USP39-220ENST00000613444 RIMS1Q86UR5 1692 aaKnown RBP20.17■□□□□ 0.82
USP39-220ENST00000613444 A2ML1A8K2U0 1454 aa20.17■□□□□ 0.82
USP39-220ENST00000613444 USP47Q96K76 1375 aa20.17■□□□□ 0.82
USP39-220ENST00000613444 KDM5AP29375 1690 aaKnown RBP20.16■□□□□ 0.82
USP39-220ENST00000613444 CEBPAP49715 358 aaPredicted RBP20.16■□□□□ 0.82
USP39-220ENST00000613444 CARD11Q9BXL7 1154 aa20.16■□□□□ 0.82
USP39-220ENST00000613444 PIK3C2GO75747 1445 aa20.15■□□□□ 0.82
USP39-220ENST00000613444 ZFYVE9O95405 1425 aa20.14■□□□□ 0.81
USP39-220ENST00000613444 DIEXFQ68CQ4 756 aaKnown RBP20.14■□□□□ 0.81
USP39-220ENST00000613444 UBR1Q8IWV7 1749 aa20.13■□□□□ 0.81
USP39-220ENST00000613444 IQGAP1P46940 1657 aa20.12■□□□□ 0.81
USP39-220ENST00000613444 POLR1AO95602 1720 aaPredicted RBP20.11■□□□□ 0.81
USP39-220ENST00000613444 NLRP1Q9C000 1473 aa20.11■□□□□ 0.81
USP39-220ENST00000613444 VGFO15240 615 aaPredicted RBP20.09■□□□□ 0.81
USP39-220ENST00000613444 CFAP70Q5T0N1 1121 aa20.09■□□□□ 0.81
USP39-220ENST00000613444 SETBP1Q9Y6X0 1596 aa20.08■□□□□ 0.81
USP39-220ENST00000613444 NUTM2DQ5VT03 806 aaPredicted RBP20.08■□□□□ 0.8
USP39-220ENST00000613444 STAG3Q9UJ98 1225 aa20.08■□□□□ 0.8
USP39-220ENST00000613444 C11orf95C9JLR9 678 aaPredicted RBP20.07■□□□□ 0.8
USP39-220ENST00000613444 MYO3AQ8NEV4 1616 aa20.06■□□□□ 0.8
USP39-220ENST00000613444 C14orf93Q9H972 538 aaKnown RBP20.06■□□□□ 0.8
USP39-220ENST00000613444 ADGRB1O14514 1584 aa20.06■□□□□ 0.8
USP39-220ENST00000613444 WASHC2AQ641Q2 1341 aa20.05■□□□□ 0.8
USP39-220ENST00000613444 RIMS2Q9UQ26 1411 aa20.05■□□□□ 0.8
USP39-220ENST00000613444 ST20-MTHFSA0A0A6YYL1 179 aa20.05■□□□□ 0.8
USP39-220ENST00000613444 SCAF11Q99590 1463 aaKnown RBP20.04■□□□□ 0.8
USP39-220ENST00000613444 PLPPR3Q6T4P5 718 aa20.02■□□□□ 0.8
USP39-220ENST00000613444 SETD1BQ9UPS6 1966 aaKnown RBP20.02■□□□□ 0.79
USP39-220ENST00000613444 CCDC7Q96M83 1385 aa20.01■□□□□ 0.79
USP39-220ENST00000613444 TMEM2Q9UHN6 1383 aa20■□□□□ 0.79
USP39-220ENST00000613444 ASXL1Q8IXJ9 1541 aa20■□□□□ 0.79
USP39-220ENST00000613444 SETD1AO15047 1707 aaKnown RBP20■□□□□ 0.79
USP39-220ENST00000613444 NRXN3Q9Y4C0 1643 aa19.99■□□□□ 0.79
USP39-220ENST00000613444 DDX10Q13206 875 aaKnown RBP19.99■□□□□ 0.79
USP39-220ENST00000613444 KIF7Q2M1P5 1343 aa19.99■□□□□ 0.79
USP39-220ENST00000613444 TESK2Q96S53 571 aa19.98■□□□□ 0.79
USP39-220ENST00000613444 ALKQ9UM73 1620 aa19.98■□□□□ 0.79
USP39-220ENST00000613444 PTPRMP28827 1452 aa19.98■□□□□ 0.79
USP39-220ENST00000613444 CEP170BQ9Y4F5 1589 aaPredicted RBP19.97■□□□□ 0.79
USP39-220ENST00000613444 ZNF142P52746 1687 aaPredicted RBP19.97■□□□□ 0.79
USP39-220ENST00000613444 SLIT1O75093 1534 aa19.97■□□□□ 0.79
USP39-220ENST00000613444 ARHGAP23Q9P227 1491 aa19.97■□□□□ 0.79
USP39-220ENST00000613444 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.95■□□□□ 0.78
USP39-220ENST00000613444 TMEM132EQ6IEE7 984 aa19.95■□□□□ 0.78
USP39-220ENST00000613444 ARHGEF28Q8N1W1 1705 aaKnown RBP19.93■□□□□ 0.78
USP39-220ENST00000613444 EIF3AQ14152 1382 aaKnown RBP19.92■□□□□ 0.78
USP39-220ENST00000613444 LTKP29376 864 aa19.91■□□□□ 0.78
USP39-220ENST00000613444 HDGFP51858 240 aaKnown RBP19.91■□□□□ 0.78
USP39-220ENST00000613444 SENP3Q9H4L4 574 aaPredicted RBP19.91■□□□□ 0.78
USP39-220ENST00000613444 DISP3Q9P2K9 1392 aa19.9■□□□□ 0.78
USP39-220ENST00000613444 THEMISQ8N1K5 641 aaPredicted RBP19.9■□□□□ 0.78
USP39-220ENST00000613444 QRICH2Q9H0J4 1663 aa19.88■□□□□ 0.77
USP39-220ENST00000613444 PLEKHG1Q9ULL1 1385 aa19.88■□□□□ 0.77
USP39-220ENST00000613444 MIER1Q8N108 512 aa19.88■□□□□ 0.77
USP39-220ENST00000613444 TRAK1Q9UPV9 953 aa19.88■□□□□ 0.77
USP39-220ENST00000613444 ADAMTS13Q76LX8 1427 aa19.87■□□□□ 0.77
USP39-220ENST00000613444 YTHDC2Q9H6S0 1430 aaKnown RBP19.87■□□□□ 0.77
USP39-220ENST00000613444 SBNO2Q9Y2G9 1366 aa19.87■□□□□ 0.77
USP39-220ENST00000613444 TXNDC2Q86VQ3 553 aa19.86■□□□□ 0.77
USP39-220ENST00000613444 MED14O60244 1454 aa19.85■□□□□ 0.77
USP39-220ENST00000613444 TMF1P82094 1093 aa19.84■□□□□ 0.77
USP39-220ENST00000613444 CENPJQ9HC77 1338 aaPredicted RBP19.84■□□□□ 0.77
USP39-220ENST00000613444 METP08581 1390 aa19.84■□□□□ 0.77
USP39-220ENST00000613444 EID1Q9Y6B2 187 aa19.83■□□□□ 0.77
USP39-220ENST00000613444 KDM4FA0A1W2PPD8 638 aa19.82■□□□□ 0.76
USP39-220ENST00000613444 DLC1Q96QB1 1528 aa19.82■□□□□ 0.76
USP39-220ENST00000613444 KNDC1Q76NI1 1749 aa19.81■□□□□ 0.76
USP39-220ENST00000613444 LRPPRCP42704 1394 aaKnown RBP19.81■□□□□ 0.76
USP39-220ENST00000613444 STK26Q9P289 416 aa19.8■□□□□ 0.76
USP39-220ENST00000613444 POLR3GLQ9BT43 218 aa19.8■□□□□ 0.76
USP39-220ENST00000613444 ABCC11Q96J66 1382 aa19.79■□□□□ 0.76
USP39-220ENST00000613444 SLC24A1O60721 1099 aa19.78■□□□□ 0.76
USP39-220ENST00000613444 MYOM1P52179 1685 aa19.78■□□□□ 0.76
USP39-220ENST00000613444 DIP2AQ14689 1571 aa19.77■□□□□ 0.76
USP39-220ENST00000613444 TECPR2O15040 1411 aa19.77■□□□□ 0.76
USP39-220ENST00000613444 BCANQ96GW7 911 aa19.76■□□□□ 0.75
USP39-220ENST00000613444 CPS1P31327 1500 aa19.75■□□□□ 0.75
USP39-220ENST00000613444 TULP4Q9NRJ4 1543 aa19.75■□□□□ 0.75
USP39-220ENST00000613444 CDCA8Q53HL2 280 aa19.74■□□□□ 0.75
USP39-220ENST00000613444 PRAM1Q96QH2 718 aa19.74■□□□□ 0.75
USP39-220ENST00000613444 TBX22Q9Y458 520 aa19.74■□□□□ 0.75
USP39-220ENST00000613444 SLC26A8Q96RN1 970 aa19.74■□□□□ 0.75
USP39-220ENST00000613444 ANKLE2Q86XL3 938 aa19.73■□□□□ 0.75
USP39-220ENST00000613444 PTPRUQ92729 1446 aa19.73■□□□□ 0.75
USP39-220ENST00000613444 FAM135BQ49AJ0 1406 aa19.71■□□□□ 0.75
USP39-220ENST00000613444 PLEKHH1Q9ULM0 1364 aa19.71■□□□□ 0.75
USP39-220ENST00000613444 SIRT1Q96EB6 747 aa19.71■□□□□ 0.75
USP39-220ENST00000613444 SAFB2Q14151 953 aaKnown RBP eCLIP19.7■□□□□ 0.74
USP39-220ENST00000613444 ANP32CO43423 234 aa19.7■□□□□ 0.74
USP39-220ENST00000613444 WAPLQ7Z5K2 1190 aa19.69■□□□□ 0.74
USP39-220ENST00000613444 POGKQ9P215 609 aa19.69■□□□□ 0.74
USP39-220ENST00000613444 XRN1Q8IZH2 1706 aaKnown RBP19.69■□□□□ 0.74
USP39-220ENST00000613444 ROBO2Q9HCK4 1378 aa19.68■□□□□ 0.74
USP39-220ENST00000613444 PER1O15534 1290 aaPredicted RBP19.67■□□□□ 0.74
USP39-220ENST00000613444 PUS7Q96PZ0 661 aaKnown RBP19.67■□□□□ 0.74
USP39-220ENST00000613444 EVC2Q86UK5 1308 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms