RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 MCM4P33991 863 aa6.03□□□□□ -1.44
VPS13D-213ENST00000613099 HSP90AB3PQ58FF7 597 aa6.03□□□□□ -1.44
VPS13D-213ENST00000613099 TXLNBQ8N3L3 684 aa6.03□□□□□ -1.44
VPS13D-213ENST00000613099 CCP110O43303 1012 aa6.03□□□□□ -1.44
VPS13D-213ENST00000613099 HMMRO75330 724 aa6.03□□□□□ -1.44
VPS13D-213ENST00000613099 LIG1P18858 919 aa6.03□□□□□ -1.44
VPS13D-213ENST00000613099 TMCO5BA8MYB1 307 aa6.03□□□□□ -1.44
VPS13D-213ENST00000613099 GOLIM4O00461 696 aa6.02□□□□□ -1.45
VPS13D-213ENST00000613099 IFT57Q9NWB7 429 aa6.02□□□□□ -1.45
VPS13D-213ENST00000613099 CIZ1Q9ULV3 898 aaPredicted RBP6.02□□□□□ -1.45
VPS13D-213ENST00000613099 PLEKHH2Q8IVE3 1493 aa6.02□□□□□ -1.45
VPS13D-213ENST00000613099 SARNPP82979 210 aaKnown RBP6.02□□□□□ -1.45
VPS13D-213ENST00000613099 RRP12Q5JTH9 1297 aaKnown RBP6.02□□□□□ -1.45
VPS13D-213ENST00000613099 KRT222Q8N1A0 295 aa6.02□□□□□ -1.45
VPS13D-213ENST00000613099 ZNF592Q92610 1267 aa6.02□□□□□ -1.45
VPS13D-213ENST00000613099 CCDC112Q8NEF3 446 aa6.02□□□□□ -1.45
VPS13D-213ENST00000613099 ST18O60284 1047 aa6.02□□□□□ -1.45
VPS13D-213ENST00000613099 MAP3K1Q13233 1512 aa6.02□□□□□ -1.45
VPS13D-213ENST00000613099 ERICH3Q5RHP9 1530 aa6.02□□□□□ -1.45
VPS13D-213ENST00000613099 CREBRFQ8IUR6 639 aa6.02□□□□□ -1.45
VPS13D-213ENST00000613099 INCENPQ9NQS7 918 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 KIAA0754O94854 1291 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 NCAPD3P42695 1498 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 ERICH4A6NGS2 130 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 DMTNQ08495 405 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 MRVI1Q9Y6F6 885 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 CT47A1Q5JQC4 288 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-213ENST00000613099 KIF2AO00139 706 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-213ENST00000613099 ROCK2O75116 1388 aaKnown RBP6.01□□□□□ -1.45
VPS13D-213ENST00000613099 OGFRQ9NZT2 677 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 UACAQ9BZF9 1416 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 MBD3O95983 291 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 IVLP07476 585 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 TMX4Q9H1E5 349 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-213ENST00000613099 SUDS3Q9H7L9 328 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-213ENST00000613099 RABEP1Q15276 862 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 EFCC1Q9HA90 598 aa6.01□□□□□ -1.45
VPS13D-213ENST00000613099 HSPA5P11021 654 aaKnown RBP6□□□□□ -1.45
VPS13D-213ENST00000613099 DCTN1Q14203 1278 aa6□□□□□ -1.45
VPS13D-213ENST00000613099 FOXD1Q16676 465 aa6□□□□□ -1.45
VPS13D-213ENST00000613099 LRCH2Q5VUJ6 765 aa6□□□□□ -1.45
VPS13D-213ENST00000613099 GABPB1Q06547 395 aaPredicted RBP6□□□□□ -1.45
VPS13D-213ENST00000613099 RRP1P56182 461 aaKnown RBP6□□□□□ -1.45
VPS13D-213ENST00000613099 KIAA1328Q86T90 577 aa6□□□□□ -1.45
VPS13D-213ENST00000613099 FAM184AQ8NB25 1140 aa6□□□□□ -1.45
VPS13D-213ENST00000613099 IPO8O15397 1037 aaKnown RBP6□□□□□ -1.45
VPS13D-213ENST00000613099 TSPY26PQ9H489 355 aa6□□□□□ -1.45
VPS13D-213ENST00000613099 MPHOSPH10O00566 681 aaKnown RBP5.99□□□□□ -1.45
VPS13D-213ENST00000613099 MFAP1P55081 439 aaKnown RBP5.99□□□□□ -1.45
VPS13D-213ENST00000613099 PPP6R1Q9UPN7 881 aa5.99□□□□□ -1.45
VPS13D-213ENST00000613099 PBRM1Q86U86 1689 aa5.99□□□□□ -1.45
VPS13D-213ENST00000613099 GNL2Q13823 731 aaKnown RBP5.99□□□□□ -1.45
VPS13D-213ENST00000613099 CCAR2Q8N163 923 aaKnown RBP5.99□□□□□ -1.45
VPS13D-213ENST00000613099 EFCAB5A4FU69 1503 aa5.99□□□□□ -1.45
VPS13D-213ENST00000613099 NOL10Q9BSC4 688 aaKnown RBP5.99□□□□□ -1.45
VPS13D-213ENST00000613099 RASSF4Q9H2L5 321 aa5.99□□□□□ -1.45
VPS13D-213ENST00000613099 VGLL3A8MV65 326 aa5.99□□□□□ -1.45
VPS13D-213ENST00000613099 A0A1B0GUL7 405 aa5.99□□□□□ -1.45
VPS13D-213ENST00000613099 V9GYY5 206 aaPredicted RBP5.99□□□□□ -1.45
VPS13D-213ENST00000613099 GOLGA6L19H0YKK7 550 aa5.99□□□□□ -1.45
VPS13D-213ENST00000613099 ANKRD20A12PQ8NF67 263 aa5.99□□□□□ -1.45
VPS13D-213ENST00000613099 XRCC6P12956 609 aaKnown RBP eCLIP5.99□□□□□ -1.453e-6■■■■□ 23.1
VPS13D-213ENST00000613099 MNAT1P51948 309 aa5.99□□□□□ -1.45
VPS13D-213ENST00000613099 ATAD2BQ9ULI0 1458 aa5.99□□□□□ -1.45
VPS13D-213ENST00000613099 TPD52L1Q16890 204 aaPredicted RBP5.98□□□□□ -1.45
VPS13D-213ENST00000613099 TNIKQ9UKE5 1360 aa5.98□□□□□ -1.45
VPS13D-213ENST00000613099 HMGB1P1B2RPK0 211 aaPredicted RBP5.98□□□□□ -1.45
VPS13D-213ENST00000613099 HOMER1Q86YM7 354 aa5.98□□□□□ -1.45
VPS13D-213ENST00000613099 CPSF2Q9P2I0 782 aaKnown RBP5.98□□□□□ -1.45
VPS13D-213ENST00000613099 EIF3JO75822 258 aaKnown RBP5.98□□□□□ -1.45
VPS13D-213ENST00000613099 RBM25P49756 843 aaKnown RBP5.98□□□□□ -1.45
VPS13D-213ENST00000613099 HOXA7P31268 230 aaPredicted RBP5.98□□□□□ -1.45
VPS13D-213ENST00000613099 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.98□□□□□ -1.45
VPS13D-213ENST00000613099 ITSN2Q9NZM3 1697 aa5.98□□□□□ -1.45
VPS13D-213ENST00000613099 NF2P35240 595 aa5.98□□□□□ -1.45
VPS13D-213ENST00000613099 TRIM6-TRIM34B2RNG4 842 aa5.97□□□□□ -1.45
VPS13D-213ENST00000613099 TRIM34Q9BYJ4 488 aa5.97□□□□□ -1.45
VPS13D-213ENST00000613099 TTC31Q49AM3 519 aaPredicted RBP5.97□□□□□ -1.45
VPS13D-213ENST00000613099 ZRSR2Q15696 482 aaKnown RBP5.97□□□□□ -1.45
VPS13D-213ENST00000613099 POGKQ9P215 609 aa5.97□□□□□ -1.45
VPS13D-213ENST00000613099 GOLGA6L7A0A1B0GV03 622 aa5.97□□□□□ -1.45
VPS13D-213ENST00000613099 NPM1P06748 294 aaKnown RBP eCLIP5.97□□□□□ -1.45
VPS13D-213ENST00000613099 PAXBP1Q9Y5B6 917 aa5.97□□□□□ -1.45
VPS13D-213ENST00000613099 CWC22Q9HCG8 908 aaKnown RBP5.97□□□□□ -1.45
VPS13D-213ENST00000613099 CEP120Q8N960 986 aa5.97□□□□□ -1.45
VPS13D-213ENST00000613099 POLR3GO15318 223 aaPredicted RBP5.97□□□□□ -1.45
VPS13D-213ENST00000613099 BMS1Q14692 1282 aaKnown RBP5.97□□□□□ -1.45
VPS13D-213ENST00000613099 DNAAF4Q8WXU2 420 aa5.97□□□□□ -1.45
VPS13D-213ENST00000613099 THOC2Q8NI27 1593 aaKnown RBP5.97□□□□□ -1.45
VPS13D-213ENST00000613099 VGFO15240 615 aaPredicted RBP5.96□□□□□ -1.45
VPS13D-213ENST00000613099 CCDC34Q96HJ3 373 aa5.96□□□□□ -1.45
VPS13D-213ENST00000613099 CCDC88BA6NC98 1476 aa5.96□□□□□ -1.46
VPS13D-213ENST00000613099 MROH2BQ7Z745 1585 aa5.96□□□□□ -1.46
VPS13D-213ENST00000613099 LUZP1Q86V48 1076 aa5.96□□□□□ -1.46
VPS13D-213ENST00000613099 U2SURPO15042 1029 aaKnown RBP5.96□□□□□ -1.46
VPS13D-213ENST00000613099 ERLIN1O75477 346 aa5.96□□□□□ -1.46
VPS13D-213ENST00000613099 CUX1P39880 1505 aa5.96□□□□□ -1.46
VPS13D-213ENST00000613099 PPP1R15AO75807 674 aaPredicted RBP5.95□□□□□ -1.46
VPS13D-213ENST00000613099 MEX3CQ5U5Q3 659 aaKnown RBP5.95□□□□□ -1.46
VPS13D-213ENST00000613099 ZFP91Q96JP5 570 aaPredicted RBP5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms