RNA–Protein interactions for RNA: ENST00000611869.4

TCF3-220, Transcript of transcription factor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCF3, Length 4,409 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-220ENST00000611869 TCOF1Q13428 1488 aaKnown RBP16.7■□□□□ 0.26
TCF3-220ENST00000611869 CENPQQ7L2Z9 268 aaPredicted RBP16.69■□□□□ 0.26
TCF3-220ENST00000611869 ABCA5Q8WWZ7 1642 aa16.69■□□□□ 0.26
TCF3-220ENST00000611869 RUNDC1Q96C34 613 aa16.69■□□□□ 0.26
TCF3-220ENST00000611869 COG3Q96JB2 828 aa16.69■□□□□ 0.26
TCF3-220ENST00000611869 CASC1Q6TDU7 716 aa16.69■□□□□ 0.26
TCF3-220ENST00000611869 DIAPH1O60610 1272 aaKnown RBP16.68■□□□□ 0.26
TCF3-220ENST00000611869 LTV1Q96GA3 475 aaPredicted RBP16.68■□□□□ 0.26
TCF3-220ENST00000611869 DISP1Q96F81 1524 aa16.68■□□□□ 0.26
TCF3-220ENST00000611869 AMPHP49418 695 aa16.67■□□□□ 0.26
TCF3-220ENST00000611869 RIPK4P57078 832 aa16.66■□□□□ 0.26
TCF3-220ENST00000611869 TCP11L2Q8N4U5 519 aa16.66■□□□□ 0.26
TCF3-220ENST00000611869 PRAM1Q96QH2 718 aa16.66■□□□□ 0.26
TCF3-220ENST00000611869 EIF4G3O43432 1585 aaKnown RBP16.65■□□□□ 0.26
TCF3-220ENST00000611869 SLKQ9H2G2 1235 aaPredicted RBP16.65■□□□□ 0.26
TCF3-220ENST00000611869 ZKSCAN2Q63HK3 967 aa16.65■□□□□ 0.26
TCF3-220ENST00000611869 NGEFQ8N5V2 710 aa16.64■□□□□ 0.25
TCF3-220ENST00000611869 HSP90AB1P08238 724 aaKnown RBP16.64■□□□□ 0.25
TCF3-220ENST00000611869 ADGRL1O94910 1474 aa16.64■□□□□ 0.25
TCF3-220ENST00000611869 DEKP35659 375 aaKnown RBP16.64■□□□□ 0.25
TCF3-220ENST00000611869 OS9Q13438 667 aaPredicted RBP16.63■□□□□ 0.25
TCF3-220ENST00000611869 HMOX1P09601 288 aa16.63■□□□□ 0.25
TCF3-220ENST00000611869 ADGRF5Q8IZF2 1346 aa16.62■□□□□ 0.25
TCF3-220ENST00000611869 LMOD3Q0VAK6 560 aa16.62■□□□□ 0.25
TCF3-220ENST00000611869 PANK1Q8TE04 598 aa16.62■□□□□ 0.25
TCF3-220ENST00000611869 CD109Q6YHK3 1445 aa16.62■□□□□ 0.25
TCF3-220ENST00000611869 MFAP1P55081 439 aaKnown RBP16.62■□□□□ 0.25
TCF3-220ENST00000611869 SAMD9Q5K651 1589 aa16.62■□□□□ 0.25
TCF3-220ENST00000611869 EIF5BO60841 1220 aaKnown RBP16.62■□□□□ 0.25
TCF3-220ENST00000611869 SLC4A3P48751 1232 aa16.62■□□□□ 0.25
TCF3-220ENST00000611869 FANCIQ9NVI1 1328 aa16.62■□□□□ 0.25
TCF3-220ENST00000611869 SMG6Q86US8 1419 aaKnown RBP16.62■□□□□ 0.25
TCF3-220ENST00000611869 HSCBQ8IWL3 235 aa16.61■□□□□ 0.25
TCF3-220ENST00000611869 GOLGA6L22H0YM25 854 aa16.61■□□□□ 0.25
TCF3-220ENST00000611869 NCLP19338 710 aaKnown RBP16.61■□□□□ 0.25
TCF3-220ENST00000611869 SLC4A10Q6U841 1118 aa16.61■□□□□ 0.25
TCF3-220ENST00000611869 SLC52A1Q9NWF4 448 aa16.61■□□□□ 0.25
TCF3-220ENST00000611869 MAGI3Q5TCQ9 1506 aa16.61■□□□□ 0.25
TCF3-220ENST00000611869 FAM161AQ3B820 660 aa16.6■□□□□ 0.25
TCF3-220ENST00000611869 STK31Q9BXU1 1019 aa16.59■□□□□ 0.25
TCF3-220ENST00000611869 PBRM1Q86U86 1689 aa16.59■□□□□ 0.25
TCF3-220ENST00000611869 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.59■□□□□ 0.25
TCF3-220ENST00000611869 SYCP2Q9BX26 1530 aa16.58■□□□□ 0.25
TCF3-220ENST00000611869 FANCAO15360 1455 aa16.58■□□□□ 0.25
TCF3-220ENST00000611869 NUP160Q12769 1436 aa16.57■□□□□ 0.24
TCF3-220ENST00000611869 TPRNQ4KMQ1 711 aa16.57■□□□□ 0.24
TCF3-220ENST00000611869 DISP3Q9P2K9 1392 aa16.57■□□□□ 0.24
TCF3-220ENST00000611869 ITSN2Q9NZM3 1697 aa16.57■□□□□ 0.24
TCF3-220ENST00000611869 BCAR3O75815 825 aa16.57■□□□□ 0.24
TCF3-220ENST00000611869 TXNDC2Q86VQ3 553 aa16.57■□□□□ 0.24
TCF3-220ENST00000611869 DZIP1LQ8IYY4 767 aaKnown RBP16.57■□□□□ 0.24
TCF3-220ENST00000611869 CABP1Q9NZU7 370 aa16.56■□□□□ 0.24
TCF3-220ENST00000611869 PLCH2O75038 1416 aa16.56■□□□□ 0.24
TCF3-220ENST00000611869 TARBP1Q13395 1621 aaKnown RBP16.56■□□□□ 0.24
TCF3-220ENST00000611869 RTN4Q9NQC3 1192 aaKnown RBP16.54■□□□□ 0.24
TCF3-220ENST00000611869 CDK19Q9BWU1 502 aa16.54■□□□□ 0.24
TCF3-220ENST00000611869 RPGRIP1LQ68CZ1 1315 aa16.54■□□□□ 0.24
TCF3-220ENST00000611869 PZPP20742 1482 aa16.54■□□□□ 0.24
TCF3-220ENST00000611869 CSB-PGBD3P0DP91 1061 aa16.53■□□□□ 0.24
TCF3-220ENST00000611869 TRAPPC8Q9Y2L5 1435 aa16.53■□□□□ 0.24
TCF3-220ENST00000611869 IDI1Q13907 227 aa16.52■□□□□ 0.24
TCF3-220ENST00000611869 TSR2Q969E8 191 aaKnown RBP16.52■□□□□ 0.23
TCF3-220ENST00000611869 NSD3Q9BZ95 1437 aa16.52■□□□□ 0.23
TCF3-220ENST00000611869 DHX29Q7Z478 1369 aaKnown RBP16.51■□□□□ 0.23
TCF3-220ENST00000611869 ANKRD45Q5TZF3 282 aa16.51■□□□□ 0.23
TCF3-220ENST00000611869 DDX19BQ9UMR2 479 aa16.51■□□□□ 0.23
TCF3-220ENST00000611869 RALGAPBQ86X10 1494 aa16.51■□□□□ 0.23
TCF3-220ENST00000611869 DNMT1P26358 1616 aaKnown RBP16.51■□□□□ 0.23
TCF3-220ENST00000611869 PRKAR2BP31323 418 aa16.51■□□□□ 0.23
TCF3-220ENST00000611869 FBXO31Q5XUX0 539 aaPredicted RBP16.5■□□□□ 0.23
TCF3-220ENST00000611869 FAM135AQ9P2D6 1515 aa16.5■□□□□ 0.23
TCF3-220ENST00000611869 EXOSC9Q06265 439 aaKnown RBP16.5■□□□□ 0.23
TCF3-220ENST00000611869 KCNJ4P48050 445 aa16.49■□□□□ 0.23
TCF3-220ENST00000611869 NUTM2GQ5VZR2 741 aa16.49■□□□□ 0.23
TCF3-220ENST00000611869 PRAG1Q86YV5 1406 aa16.48■□□□□ 0.23
TCF3-220ENST00000611869 NOS1P29475 1434 aa16.48■□□□□ 0.23
TCF3-220ENST00000611869 HMMRO75330 724 aa16.47■□□□□ 0.23
TCF3-220ENST00000611869 NECTIN2Q92692 538 aa16.47■□□□□ 0.23
TCF3-220ENST00000611869 SCAF11Q99590 1463 aaKnown RBP16.47■□□□□ 0.23
TCF3-220ENST00000611869 WAPLQ7Z5K2 1190 aa16.46■□□□□ 0.23
TCF3-220ENST00000611869 TRIM44Q96DX7 344 aaPredicted RBP16.46■□□□□ 0.23
TCF3-220ENST00000611869 CEP170Q5SW79 1584 aa16.46■□□□□ 0.23
TCF3-220ENST00000611869 SLC26A8Q96RN1 970 aa16.46■□□□□ 0.23
TCF3-220ENST00000611869 GNAI1P63096 354 aa16.46■□□□□ 0.23
TCF3-220ENST00000611869 KDM5BQ9UGL1 1544 aa16.46■□□□□ 0.22
TCF3-220ENST00000611869 ASXL2Q76L83 1435 aa16.46■□□□□ 0.22
TCF3-220ENST00000611869 SLFN5Q08AF3 891 aa16.46■□□□□ 0.22
TCF3-220ENST00000611869 TESK2Q96S53 571 aa16.45■□□□□ 0.22
TCF3-220ENST00000611869 DUOX2Q9NRD8 1548 aa16.45■□□□□ 0.22
TCF3-220ENST00000611869 C20orf194Q5TEA3 1177 aa16.45■□□□□ 0.22
TCF3-220ENST00000611869 KIF16BQ96L93 1317 aa16.45■□□□□ 0.22
TCF3-220ENST00000611869 WWC1Q8IX03 1113 aa16.45■□□□□ 0.22
TCF3-220ENST00000611869 GZF1Q9H116 711 aaPredicted RBP16.45■□□□□ 0.22
TCF3-220ENST00000611869 FOXD4L1Q9NU39 408 aa16.44■□□□□ 0.22
TCF3-220ENST00000611869 SHANK2Q9UPX8 1470 aa16.44■□□□□ 0.22
TCF3-220ENST00000611869 LNPKQ9C0E8 428 aa16.44■□□□□ 0.22
TCF3-220ENST00000611869 NLRP6P59044 892 aa16.43■□□□□ 0.22
TCF3-220ENST00000611869 TRIM6-TRIM34B2RNG4 842 aa16.43■□□□□ 0.22
TCF3-220ENST00000611869 SKAP1Q86WV1 359 aa16.43■□□□□ 0.22
TCF3-220ENST00000611869 TEX14Q8IWB6 1497 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms