RNA–Protein interactions for RNA: ENST00000602723.5

CSMD1-217, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 10,938 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-217ENST00000602723 GTF2E1P29083 439 aaPredicted RBP11.69□□□□□ -0.54
CSMD1-217ENST00000602723 CPLX1O14810 134 aa11.69□□□□□ -0.54
CSMD1-217ENST00000602723 ROCK1Q13464 1354 aa11.69□□□□□ -0.54
CSMD1-217ENST00000602723 EXOC6Q8TAG9 804 aa11.69□□□□□ -0.54
CSMD1-217ENST00000602723 CPLX2Q6PUV4 134 aaKnown RBP11.69□□□□□ -0.54
CSMD1-217ENST00000602723 FBXO3Q9UK99 471 aa11.68□□□□□ -0.54
CSMD1-217ENST00000602723 CCDC144AA2RUR9 1427 aa11.68□□□□□ -0.54
CSMD1-217ENST00000602723 HSP90B2PQ58FF3 399 aa11.68□□□□□ -0.54
CSMD1-217ENST00000602723 FBXW7Q969H0 707 aa11.68□□□□□ -0.54
CSMD1-217ENST00000602723 NASPP49321 788 aaPredicted RBP11.68□□□□□ -0.54
CSMD1-217ENST00000602723 NGDNQ8NEJ9 315 aaKnown RBP11.68□□□□□ -0.54
CSMD1-217ENST00000602723 MNS1Q8NEH6 495 aa11.68□□□□□ -0.54
CSMD1-217ENST00000602723 USP47Q96K76 1375 aa11.68□□□□□ -0.54
CSMD1-217ENST00000602723 UACAQ9BZF9 1416 aa11.67□□□□□ -0.54
CSMD1-217ENST00000602723 CDR1P51861 262 aa11.67□□□□□ -0.54
CSMD1-217ENST00000602723 CWC15Q9P013 229 aaKnown RBP11.67□□□□□ -0.54
CSMD1-217ENST00000602723 MTERF4Q7Z6M4 381 aaKnown RBP11.67□□□□□ -0.54
CSMD1-217ENST00000602723 CHMP5Q9NZZ3 219 aa11.66□□□□□ -0.54
CSMD1-217ENST00000602723 PANK3Q9H999 370 aa11.66□□□□□ -0.54
CSMD1-217ENST00000602723 NAP1L1P55209 391 aaKnown RBP11.66□□□□□ -0.54
CSMD1-217ENST00000602723 CCDC47Q96A33 483 aaKnown RBP11.66□□□□□ -0.54
CSMD1-217ENST00000602723 C9orf78Q9NZ63 289 aaPredicted RBP11.66□□□□□ -0.54
CSMD1-217ENST00000602723 DDX19BQ9UMR2 479 aa11.66□□□□□ -0.54
CSMD1-217ENST00000602723 COG6Q9Y2V7 657 aa11.66□□□□□ -0.54
CSMD1-217ENST00000602723 SMARCA2P51531 1590 aa11.66□□□□□ -0.54
CSMD1-217ENST00000602723 VPS37CA5D8V6 355 aaPredicted RBP11.66□□□□□ -0.54
CSMD1-217ENST00000602723 SASS6Q6UVJ0 657 aa11.66□□□□□ -0.54
CSMD1-217ENST00000602723 WWC1Q8IX03 1113 aa11.66□□□□□ -0.54
CSMD1-217ENST00000602723 CCDC39Q9UFE4 941 aa11.66□□□□□ -0.54
CSMD1-217ENST00000602723 RNF20Q5VTR2 975 aa11.66□□□□□ -0.54
CSMD1-217ENST00000602723 NUCB2P80303 420 aa11.65□□□□□ -0.54
CSMD1-217ENST00000602723 NAT10Q9H0A0 1025 aaKnown RBP11.65□□□□□ -0.54
CSMD1-217ENST00000602723 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.65□□□□□ -0.54
CSMD1-217ENST00000602723 CCDC73Q6ZRK6 1079 aa11.65□□□□□ -0.54
CSMD1-217ENST00000602723 CCDC88BA6NC98 1476 aa11.65□□□□□ -0.55
CSMD1-217ENST00000602723 APPP05067 770 aa11.64□□□□□ -0.55
CSMD1-217ENST00000602723 AMOTL1Q8IY63 956 aa11.64□□□□□ -0.55
CSMD1-217ENST00000602723 NOL10Q9BSC4 688 aaKnown RBP11.64□□□□□ -0.55
CSMD1-217ENST00000602723 NEXNQ0ZGT2 675 aa11.64□□□□□ -0.55
CSMD1-217ENST00000602723 MAP7D2Q96T17 732 aa11.64□□□□□ -0.55
CSMD1-217ENST00000602723 IFIT2P09913 472 aaKnown RBP11.64□□□□□ -0.55
CSMD1-217ENST00000602723 C1orf141Q5JVX7 400 aa11.63□□□□□ -0.55
CSMD1-217ENST00000602723 TRIM34Q9BYJ4 488 aa11.63□□□□□ -0.55
CSMD1-217ENST00000602723 SMC3Q9UQE7 1217 aa11.63□□□□□ -0.55
CSMD1-217ENST00000602723 NUTM2DQ5VT03 806 aaPredicted RBP11.63□□□□□ -0.55
CSMD1-217ENST00000602723 EID1Q9Y6B2 187 aa11.63□□□□□ -0.55
CSMD1-217ENST00000602723 ST20-MTHFSA0A0A6YYL1 179 aa11.63□□□□□ -0.55
CSMD1-217ENST00000602723 NFXL1Q6ZNB6 911 aa11.63□□□□□ -0.55
CSMD1-217ENST00000602723 CAGE1Q8TC20 777 aa11.63□□□□□ -0.55
CSMD1-217ENST00000602723 DCTN1Q14203 1278 aa11.63□□□□□ -0.55
CSMD1-217ENST00000602723 TRDNQ13061 729 aa11.62□□□□□ -0.55
CSMD1-217ENST00000602723 CCDC191Q8NCU4 936 aa11.62□□□□□ -0.55
CSMD1-217ENST00000602723 FOSBP53539 338 aa11.62□□□□□ -0.55
CSMD1-217ENST00000602723 ELL2O00472 640 aaPredicted RBP11.62□□□□□ -0.55
CSMD1-217ENST00000602723 CT47A1Q5JQC4 288 aaPredicted RBP11.62□□□□□ -0.55
CSMD1-217ENST00000602723 INTS3Q68E01 1043 aaKnown RBP11.62□□□□□ -0.55
CSMD1-217ENST00000602723 EFCAB2Q5VUJ9 269 aa11.62□□□□□ -0.55
CSMD1-217ENST00000602723 C22orf23Q9BZE7 217 aa11.62□□□□□ -0.55
CSMD1-217ENST00000602723 H0YHG0 523 aa11.61□□□□□ -0.55
CSMD1-217ENST00000602723 COG3Q96JB2 828 aa11.61□□□□□ -0.55
CSMD1-217ENST00000602723 DZIP1LQ8IYY4 767 aaKnown RBP11.61□□□□□ -0.55
CSMD1-217ENST00000602723 RAD21O60216 631 aa11.61□□□□□ -0.55
CSMD1-217ENST00000602723 TRHP20396 242 aaPredicted RBP11.61□□□□□ -0.55
CSMD1-217ENST00000602723 FHOD3Q2V2M9 1422 aa11.61□□□□□ -0.55
CSMD1-217ENST00000602723 EPS15P42566 896 aa11.61□□□□□ -0.55
CSMD1-217ENST00000602723 SAFBQ15424 915 aaKnown RBP eCLIP11.61□□□□□ -0.55
CSMD1-217ENST00000602723 EVC2Q86UK5 1308 aa11.6□□□□□ -0.55
CSMD1-217ENST00000602723 BCL11BQ9C0K0 894 aaPredicted RBP11.6□□□□□ -0.55
CSMD1-217ENST00000602723 OLFM4Q6UX06 510 aa11.6□□□□□ -0.55
CSMD1-217ENST00000602723 CCDC43Q96MW1 224 aaKnown RBP11.6□□□□□ -0.55
CSMD1-217ENST00000602723 PRKRIP1Q9H875 184 aaPredicted RBP11.6□□□□□ -0.55
CSMD1-217ENST00000602723 VPS37DQ86XT2 251 aa11.6□□□□□ -0.55
CSMD1-217ENST00000602723 WASHC2CQ9Y4E1 1318 aa11.6□□□□□ -0.55
CSMD1-217ENST00000602723 CCDC66A2RUB6 948 aa11.6□□□□□ -0.55
CSMD1-217ENST00000602723 KIF3BO15066 747 aa11.6□□□□□ -0.55
CSMD1-217ENST00000602723 DHX16O60231 1041 aaKnown RBP11.59□□□□□ -0.55
CSMD1-217ENST00000602723 R3HCC1Q9Y3T6 440 aaKnown RBP11.59□□□□□ -0.55
CSMD1-217ENST00000602723 MRE11P49959 708 aa11.59□□□□□ -0.55
CSMD1-217ENST00000602723 TRAK1Q9UPV9 953 aa11.59□□□□□ -0.55
CSMD1-217ENST00000602723 RDXP35241 583 aaKnown RBP11.59□□□□□ -0.55
CSMD1-217ENST00000602723 PDILTQ8N807 584 aa11.59□□□□□ -0.55
CSMD1-217ENST00000602723 CECR2Q9BXF3 1484 aa11.59□□□□□ -0.55
CSMD1-217ENST00000602723 ODF2Q5BJF6 829 aa11.59□□□□□ -0.55
CSMD1-217ENST00000602723 NINLQ9Y2I6 1382 aa11.58□□□□□ -0.55
CSMD1-217ENST00000602723 TTC5Q8N0Z6 440 aa11.58□□□□□ -0.56
CSMD1-217ENST00000602723 TEFQ10587 303 aa11.58□□□□□ -0.56
CSMD1-217ENST00000602723 NFKBIBQ15653 356 aa11.58□□□□□ -0.56
CSMD1-217ENST00000602723 MYO6Q9UM54 1294 aa11.58□□□□□ -0.56
CSMD1-217ENST00000602723 G3BP1Q13283 466 aaKnown RBP eCLIP11.58□□□□□ -0.56
CSMD1-217ENST00000602723 CCDC173Q0VFZ6 552 aa11.58□□□□□ -0.56
CSMD1-217ENST00000602723 CTDP1Q9Y5B0 961 aaPredicted RBP11.58□□□□□ -0.56
CSMD1-217ENST00000602723 TOP2AP11388 1531 aaKnown RBP11.58□□□□□ -0.56
CSMD1-217ENST00000602723 ERC2O15083 957 aa11.57□□□□□ -0.56
CSMD1-217ENST00000602723 ERICH2A1L162 156 aa11.57□□□□□ -0.56
CSMD1-217ENST00000602723 NUTM2FA1L443 756 aa11.57□□□□□ -0.56
CSMD1-217ENST00000602723 ERCC4Q92889 916 aaPredicted RBP11.57□□□□□ -0.56
CSMD1-217ENST00000602723 API5Q9BZZ5 524 aaKnown RBP11.57□□□□□ -0.56
CSMD1-217ENST00000602723 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.57□□□□□ -0.56
CSMD1-217ENST00000602723 EIF2S2P20042 333 aaKnown RBP11.56□□□□□ -0.56
CSMD1-217ENST00000602723 TRIM5Q9C035 493 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms