RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 SIRT1Q96EB6 747 aa11.07□□□□□ -0.64
COMMD3-215ENST00000602574 R3HCC1Q9Y3T6 440 aaKnown RBP11.07□□□□□ -0.64
COMMD3-215ENST00000602574 SCAPERQ9BY12 1400 aa11.07□□□□□ -0.64
COMMD3-215ENST00000602574 CCNB3Q8WWL7 1395 aa11.06□□□□□ -0.64
COMMD3-215ENST00000602574 LOC102724159A0A0B4J2E5 919 aa11.06□□□□□ -0.64
COMMD3-215ENST00000602574 PWP2Q15269 919 aaKnown RBP11.06□□□□□ -0.64
COMMD3-215ENST00000602574 MAPKBP1O60336 1514 aa11.06□□□□□ -0.64
COMMD3-215ENST00000602574 CAPN2P17655 700 aa11.06□□□□□ -0.64
COMMD3-215ENST00000602574 TRHP20396 242 aaPredicted RBP11.06□□□□□ -0.64
COMMD3-215ENST00000602574 GTF2F1P35269 517 aaKnown RBP eCLIP11.05□□□□□ -0.64
COMMD3-215ENST00000602574 CT47A1Q5JQC4 288 aaPredicted RBP11.05□□□□□ -0.64
COMMD3-215ENST00000602574 FEZ1Q99689 392 aa11.05□□□□□ -0.64
COMMD3-215ENST00000602574 ZNF771Q7L3S4 317 aaPredicted RBP11.04□□□□□ -0.64
COMMD3-215ENST00000602574 PLEKHD1A6NEE1 506 aa11.04□□□□□ -0.64
COMMD3-215ENST00000602574 CHMP4CQ96CF2 233 aa11.04□□□□□ -0.64
COMMD3-215ENST00000602574 DONSONQ9NYP3 566 aa11.04□□□□□ -0.64
COMMD3-215ENST00000602574 IBTKQ9P2D0 1353 aaPredicted RBP11.03□□□□□ -0.64
COMMD3-215ENST00000602574 CBX1P83916 185 aa11.02□□□□□ -0.64
COMMD3-215ENST00000602574 MNS1Q8NEH6 495 aa11.02□□□□□ -0.64
COMMD3-215ENST00000602574 WDR97A6NE52 1622 aa11.02□□□□□ -0.65
COMMD3-215ENST00000602574 MYRIPQ8NFW9 859 aa11.02□□□□□ -0.65
COMMD3-215ENST00000602574 RNF217Q8TC41 542 aa11.02□□□□□ -0.65
COMMD3-215ENST00000602574 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.01□□□□□ -0.65
COMMD3-215ENST00000602574 CALRP27797 417 aaKnown RBP11.01□□□□□ -0.65
COMMD3-215ENST00000602574 NOP2P46087 812 aaKnown RBP11.01□□□□□ -0.65
COMMD3-215ENST00000602574 NUDCQ9Y266 331 aa11.01□□□□□ -0.65
COMMD3-215ENST00000602574 SETD5Q9C0A6 1442 aa11□□□□□ -0.65
COMMD3-215ENST00000602574 PRIMPOLQ96LW4 560 aa11□□□□□ -0.65
COMMD3-215ENST00000602574 GTF2A1P52655 376 aaPredicted RBP11□□□□□ -0.65
COMMD3-215ENST00000602574 FEZ2Q9UHY8 353 aaPredicted RBP11□□□□□ -0.65
COMMD3-215ENST00000602574 NOL7Q9UMY1 257 aaKnown RBP11□□□□□ -0.65
COMMD3-215ENST00000602574 HMGN5P82970 282 aaKnown RBP10.99□□□□□ -0.65
COMMD3-215ENST00000602574 ATP2B3Q16720 1220 aa10.99□□□□□ -0.65
COMMD3-215ENST00000602574 ITFG2Q969R8 447 aa10.99□□□□□ -0.65
COMMD3-215ENST00000602574 SIN3AQ96ST3 1273 aa10.99□□□□□ -0.65
COMMD3-215ENST00000602574 ZNF692Q9BU19 519 aaPredicted RBP10.99□□□□□ -0.65
COMMD3-215ENST00000602574 CWC22Q9HCG8 908 aaKnown RBP10.99□□□□□ -0.65
COMMD3-215ENST00000602574 MED4Q9NPJ6 270 aa10.99□□□□□ -0.65
COMMD3-215ENST00000602574 CCDC144AA2RUR9 1427 aa10.99□□□□□ -0.65
COMMD3-215ENST00000602574 AKNAQ7Z591 1439 aa10.99□□□□□ -0.65
COMMD3-215ENST00000602574 CFAP43Q8NDM7 1665 aa10.99□□□□□ -0.65
COMMD3-215ENST00000602574 RBM25P49756 843 aaKnown RBP10.98□□□□□ -0.65
COMMD3-215ENST00000602574 MKL1Q969V6 931 aa10.98□□□□□ -0.65
COMMD3-215ENST00000602574 TIAM1Q13009 1591 aa10.98□□□□□ -0.65
COMMD3-215ENST00000602574 KIF3CO14782 793 aa10.98□□□□□ -0.65
COMMD3-215ENST00000602574 GUCY2CP25092 1073 aa10.98□□□□□ -0.65
COMMD3-215ENST00000602574 ICE2Q659A1 982 aa10.98□□□□□ -0.65
COMMD3-215ENST00000602574 FAM210AQ96ND0 272 aa10.98□□□□□ -0.65
COMMD3-215ENST00000602574 SLC26A8Q96RN1 970 aa10.98□□□□□ -0.65
COMMD3-215ENST00000602574 SLC4A3P48751 1232 aa10.97□□□□□ -0.65
COMMD3-215ENST00000602574 SETDB1Q15047 1291 aa10.97□□□□□ -0.65
COMMD3-215ENST00000602574 ZNF526Q8TF50 670 aaPredicted RBP10.97□□□□□ -0.65
COMMD3-215ENST00000602574 ZNF853P0CG23 659 aa10.97□□□□□ -0.65
COMMD3-215ENST00000602574 TSHZ1Q6ZSZ6 1077 aa10.97□□□□□ -0.65
COMMD3-215ENST00000602574 EP400NLQ6ZTU2 488 aa10.97□□□□□ -0.65
COMMD3-215ENST00000602574 SGSM3Q96HU1 749 aa10.97□□□□□ -0.65
COMMD3-215ENST00000602574 ANTXR1Q9H6X2 564 aa10.97□□□□□ -0.65
COMMD3-215ENST00000602574 OGFRQ9NZT2 677 aa10.97□□□□□ -0.65
COMMD3-215ENST00000602574 NRDCO43847 1150 aa10.96□□□□□ -0.65
COMMD3-215ENST00000602574 ARID4AP29374 1257 aaPredicted RBP10.96□□□□□ -0.65
COMMD3-215ENST00000602574 MCM4P33991 863 aa10.96□□□□□ -0.65
COMMD3-215ENST00000602574 MTA1Q13330 715 aa10.96□□□□□ -0.65
COMMD3-215ENST00000602574 CDCA8Q53HL2 280 aa10.96□□□□□ -0.66
COMMD3-215ENST00000602574 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.96□□□□□ -0.66
COMMD3-215ENST00000602574 RAB3GAP2Q9H2M9 1393 aa10.95□□□□□ -0.66
COMMD3-215ENST00000602574 SLFN14P0C7P3 912 aa10.95□□□□□ -0.66
COMMD3-215ENST00000602574 CCDC96Q2M329 555 aa10.95□□□□□ -0.66
COMMD3-215ENST00000602574 HSP90AB4PQ58FF6 505 aa10.95□□□□□ -0.66
COMMD3-215ENST00000602574 ANKRD23Q86SG2 305 aa10.95□□□□□ -0.66
COMMD3-215ENST00000602574 ZNF710Q8N1W2 664 aa10.95□□□□□ -0.66
COMMD3-215ENST00000602574 FAM161AQ3B820 660 aa10.95□□□□□ -0.66
COMMD3-215ENST00000602574 DDX11L8A8MPP1 907 aa10.94□□□□□ -0.66
COMMD3-215ENST00000602574 TNNT3P45378 269 aaPredicted RBP10.94□□□□□ -0.66
COMMD3-215ENST00000602574 MRVI1Q9Y6F6 885 aa10.94□□□□□ -0.66
COMMD3-215ENST00000602574 HSP90AB1P08238 724 aaKnown RBP10.93□□□□□ -0.66
COMMD3-215ENST00000602574 SWT1Q5T5J6 900 aaKnown RBP10.93□□□□□ -0.66
COMMD3-215ENST00000602574 NBPF3Q9H094 633 aa10.93□□□□□ -0.66
COMMD3-215ENST00000602574 KNSTRNQ9Y448 316 aa10.93□□□□□ -0.66
COMMD3-215ENST00000602574 KLHL33A6NCF5 533 aa10.93□□□□□ -0.66
COMMD3-215ENST00000602574 DHX16O60231 1041 aaKnown RBP10.93□□□□□ -0.66
COMMD3-215ENST00000602574 CCDC27Q2M243 656 aa10.93□□□□□ -0.66
COMMD3-215ENST00000602574 MPNDQ8N594 471 aa10.93□□□□□ -0.66
COMMD3-215ENST00000602574 SPINK5Q9NQ38 1064 aaPredicted RBP10.93□□□□□ -0.66
COMMD3-215ENST00000602574 PPP1R12AO14974 1030 aaPredicted RBP10.92□□□□□ -0.66
COMMD3-215ENST00000602574 TRAK2O60296 914 aa10.92□□□□□ -0.66
COMMD3-215ENST00000602574 TMTC2Q8N394 836 aa10.92□□□□□ -0.66
COMMD3-215ENST00000602574 ZBTB9Q96C00 473 aa10.92□□□□□ -0.66
COMMD3-215ENST00000602574 STK26Q9P289 416 aa10.92□□□□□ -0.66
COMMD3-215ENST00000602574 NCOA2Q15596 1464 aa10.92□□□□□ -0.66
COMMD3-215ENST00000602574 TDO2P48775 406 aa10.92□□□□□ -0.66
COMMD3-215ENST00000602574 TRDNQ13061 729 aa10.92□□□□□ -0.66
COMMD3-215ENST00000602574 C11orf91Q3C1V1 193 aa10.92□□□□□ -0.66
COMMD3-215ENST00000602574 PDCL2Q8N4E4 241 aa10.92□□□□□ -0.66
COMMD3-215ENST00000602574 FHAD1B1AJZ9 1412 aa10.91□□□□□ -0.66
COMMD3-215ENST00000602574 KIAA1107Q9UPP5 1409 aa10.91□□□□□ -0.66
COMMD3-215ENST00000602574 CCDC189A1A4V9 331 aa10.91□□□□□ -0.66
COMMD3-215ENST00000602574 BORCS6Q96GS4 357 aa10.91□□□□□ -0.66
COMMD3-215ENST00000602574 ZKSCAN5Q9Y2L8 839 aa10.91□□□□□ -0.66
COMMD3-215ENST00000602574 MLECQ14165 292 aa10.9□□□□□ -0.66
COMMD3-215ENST00000602574 JMYQ8N9B5 988 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms