RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 MYO5BQ9ULV0 1848 aa26.88■■□□□ 1.89
SHKBP1-223ENST00000600552 NUTM2DQ5VT03 806 aaPredicted RBP26.88■■□□□ 1.89
SHKBP1-223ENST00000600552 XIRP1Q702N8 1843 aaKnown RBP26.88■■□□□ 1.89
SHKBP1-223ENST00000600552 RPRD2Q5VT52 1461 aaKnown RBP26.87■■□□□ 1.89
SHKBP1-223ENST00000600552 TMEM94Q12767 1356 aa26.87■■□□□ 1.89
SHKBP1-223ENST00000600552 HDGFP51858 240 aaKnown RBP26.85■■□□□ 1.89
SHKBP1-223ENST00000600552 GCC2Q8IWJ2 1684 aa26.85■■□□□ 1.89
SHKBP1-223ENST00000600552 NUP155O75694 1391 aa26.84■■□□□ 1.89
SHKBP1-223ENST00000600552 ROCK1Q13464 1354 aa26.84■■□□□ 1.89
SHKBP1-223ENST00000600552 RIMS2Q9UQ26 1411 aa26.84■■□□□ 1.89
SHKBP1-223ENST00000600552 UNC13BO14795 1591 aa26.84■■□□□ 1.89
SHKBP1-223ENST00000600552 E9PCH4 1651 aa26.8■■□□□ 1.88
SHKBP1-223ENST00000600552 TMEM131LA2VDJ0 1609 aa26.78■■□□□ 1.88
SHKBP1-223ENST00000600552 ZFYVE9O95405 1425 aa26.77■■□□□ 1.88
SHKBP1-223ENST00000600552 PLEKHG1Q9ULL1 1385 aa26.76■■□□□ 1.87
SHKBP1-223ENST00000600552 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.76■■□□□ 1.87
SHKBP1-223ENST00000600552 IQGAP3Q86VI3 1631 aa26.76■■□□□ 1.87
SHKBP1-223ENST00000600552 C14orf37Q86TY3 774 aa26.74■■□□□ 1.87
SHKBP1-223ENST00000600552 MSH6P52701 1360 aa26.71■■□□□ 1.87
SHKBP1-223ENST00000600552 TBX22Q9Y458 520 aa26.7■■□□□ 1.86
SHKBP1-223ENST00000600552 FAM135BQ49AJ0 1406 aa26.7■■□□□ 1.86
SHKBP1-223ENST00000600552 NKTRP30414 1462 aaKnown RBP26.69■■□□□ 1.86
SHKBP1-223ENST00000600552 NWD1Q149M9 1564 aa26.68■■□□□ 1.86
SHKBP1-223ENST00000600552 ZNF326Q5BKZ1 582 aaKnown RBP26.68■■□□□ 1.86
SHKBP1-223ENST00000600552 CHD2O14647 1828 aaKnown RBP26.67■■□□□ 1.86
SHKBP1-223ENST00000600552 SLAIN2Q9P270 581 aa26.66■■□□□ 1.86
SHKBP1-223ENST00000600552 ROBO1Q9Y6N7 1651 aa26.66■■□□□ 1.86
SHKBP1-223ENST00000600552 TRIM52Q96A61 297 aa26.61■■□□□ 1.85
SHKBP1-223ENST00000600552 ADAMTS13Q76LX8 1427 aa26.61■■□□□ 1.85
SHKBP1-223ENST00000600552 AMOTL2Q9Y2J4 779 aa26.59■■□□□ 1.85
SHKBP1-223ENST00000600552 SPHKAPQ2M3C7 1700 aa26.58■■□□□ 1.85
SHKBP1-223ENST00000600552 ATF3P18847 181 aa26.56■■□□□ 1.84
SHKBP1-223ENST00000600552 RGS17Q9UGC6 210 aaPredicted RBP26.56■■□□□ 1.84
SHKBP1-223ENST00000600552 RRBP1Q9P2E9 1410 aaKnown RBP26.56■■□□□ 1.84
SHKBP1-223ENST00000600552 PHLPP1O60346 1717 aa26.53■■□□□ 1.84
SHKBP1-223ENST00000600552 TRPM2O94759 1503 aa26.53■■□□□ 1.84
SHKBP1-223ENST00000600552 DIP2AQ14689 1571 aa26.53■■□□□ 1.84
SHKBP1-223ENST00000600552 NAIPQ13075 1403 aa26.52■■□□□ 1.84
SHKBP1-223ENST00000600552 C19orf44Q9H6X5 657 aa26.52■■□□□ 1.84
SHKBP1-223ENST00000600552 PTPRUQ92729 1446 aa26.51■■□□□ 1.83
SHKBP1-223ENST00000600552 PIK3R4Q99570 1358 aa26.51■■□□□ 1.83
SHKBP1-223ENST00000600552 CADPS2Q86UW7 1296 aa26.51■■□□□ 1.83
SHKBP1-223ENST00000600552 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.48■■□□□ 1.83
SHKBP1-223ENST00000600552 NCOA3Q9Y6Q9 1424 aa26.48■■□□□ 1.83
SHKBP1-223ENST00000600552 CLTCL1P53675 1640 aa26.47■■□□□ 1.83
SHKBP1-223ENST00000600552 POTEAQ6S8J7 498 aa26.45■■□□□ 1.82
SHKBP1-223ENST00000600552 SLC4A1APQ9BWU0 796 aaKnown RBP26.45■■□□□ 1.82
SHKBP1-223ENST00000600552 JCADQ9P266 1359 aa26.45■■□□□ 1.82
SHKBP1-223ENST00000600552 METP08581 1390 aa26.44■■□□□ 1.82
SHKBP1-223ENST00000600552 KIF1BO60333 1816 aa26.43■■□□□ 1.82
SHKBP1-223ENST00000600552 NRXN3Q9Y4C0 1643 aa26.43■■□□□ 1.82
SHKBP1-223ENST00000600552 MEX3CQ5U5Q3 659 aaKnown RBP26.41■■□□□ 1.82
SHKBP1-223ENST00000600552 SETBP1Q9Y6X0 1596 aa26.41■■□□□ 1.82
SHKBP1-223ENST00000600552 FOXD1Q16676 465 aa26.39■■□□□ 1.82
SHKBP1-223ENST00000600552 NEXMIFQ5QGS0 1516 aa26.38■■□□□ 1.81
SHKBP1-223ENST00000600552 HFM1A2PYH4 1435 aa26.38■■□□□ 1.81
SHKBP1-223ENST00000600552 COL16A1Q07092 1604 aaPredicted RBP26.37■■□□□ 1.81
SHKBP1-223ENST00000600552 BRINP3Q76B58 766 aa26.37■■□□□ 1.81
SHKBP1-223ENST00000600552 NUTM2BA6NNL0 878 aaPredicted RBP26.35■■□□□ 1.81
SHKBP1-223ENST00000600552 NUTM2EB1AL46 878 aaPredicted RBP26.35■■□□□ 1.81
SHKBP1-223ENST00000600552 NUTM2AQ8IVF1 878 aaPredicted RBP26.35■■□□□ 1.81
SHKBP1-223ENST00000600552 XRN1Q8IZH2 1706 aaKnown RBP26.35■■□□□ 1.81
SHKBP1-223ENST00000600552 VGFO15240 615 aaPredicted RBP26.34■■□□□ 1.81
SHKBP1-223ENST00000600552 DDX17Q92841 729 aaKnown RBP26.3■■□□□ 1.8
SHKBP1-223ENST00000600552 SPATA31A6Q5VVP1 1343 aa26.29■■□□□ 1.8
SHKBP1-223ENST00000600552 AHDC1Q5TGY3 1603 aaPredicted RBP26.28■■□□□ 1.8
SHKBP1-223ENST00000600552 RGL3Q3MIN7 710 aa26.28■■□□□ 1.8
SHKBP1-223ENST00000600552 DCCP43146 1447 aa26.27■■□□□ 1.8
SHKBP1-223ENST00000600552 MST1RQ04912 1400 aa26.27■■□□□ 1.8
SHKBP1-223ENST00000600552 LRP6O75581 1613 aa26.27■■□□□ 1.8
SHKBP1-223ENST00000600552 RPGRIP1LQ68CZ1 1315 aa26.26■■□□□ 1.79
SHKBP1-223ENST00000600552 ASXL1Q8IXJ9 1541 aa26.25■■□□□ 1.79
SHKBP1-223ENST00000600552 ADGRL3Q9HAR2 1447 aa26.25■■□□□ 1.79
SHKBP1-223ENST00000600552 NALCNQ8IZF0 1738 aa26.22■■□□□ 1.79
SHKBP1-223ENST00000600552 MPHOSPH9Q99550 1183 aa26.22■■□□□ 1.79
SHKBP1-223ENST00000600552 SHPRHQ149N8 1683 aa26.22■■□□□ 1.79
SHKBP1-223ENST00000600552 ROBO2Q9HCK4 1378 aa26.21■■□□□ 1.79
SHKBP1-223ENST00000600552 ZNF772Q68DY9 489 aaPredicted RBP26.2■■□□□ 1.78
SHKBP1-223ENST00000600552 LRRC59Q96AG4 307 aaKnown RBP26.2■■□□□ 1.78
SHKBP1-223ENST00000600552 STK26Q9P289 416 aa26.2■■□□□ 1.78
SHKBP1-223ENST00000600552 PPLO60437 1756 aa26.19■■□□□ 1.78
SHKBP1-223ENST00000600552 CCDC144AA2RUR9 1427 aa26.18■■□□□ 1.78
SHKBP1-223ENST00000600552 SETD1AO15047 1707 aaKnown RBP26.18■■□□□ 1.78
SHKBP1-223ENST00000600552 ADGRF5Q8IZF2 1346 aa26.17■■□□□ 1.78
SHKBP1-223ENST00000600552 ORAI2Q96SN7 254 aa26.17■■□□□ 1.78
SHKBP1-223ENST00000600552 C1orf167Q5SNV9 1468 aa26.16■■□□□ 1.78
SHKBP1-223ENST00000600552 NHSL1Q5SYE7 1610 aa26.15■■□□□ 1.78
SHKBP1-223ENST00000600552 PTCH1Q13635 1447 aa26.14■■□□□ 1.77
SHKBP1-223ENST00000600552 SETD5Q9C0A6 1442 aa26.14■■□□□ 1.77
SHKBP1-223ENST00000600552 C8orf37Q96NL8 207 aa26.13■■□□□ 1.77
SHKBP1-223ENST00000600552 AFF2P51816 1311 aa26.13■■□□□ 1.77
SHKBP1-223ENST00000600552 TMEM132EQ6IEE7 984 aa26.11■■□□□ 1.77
SHKBP1-223ENST00000600552 NUTM2FA1L443 756 aa26.1■■□□□ 1.77
SHKBP1-223ENST00000600552 ADAMTS2O95450 1211 aa26.1■■□□□ 1.77
SHKBP1-223ENST00000600552 RXRBP28702 533 aa26.1■■□□□ 1.77
SHKBP1-223ENST00000600552 WAPLQ7Z5K2 1190 aa26.09■■□□□ 1.77
SHKBP1-223ENST00000600552 PNPLA6Q8IY17 1366 aa26.08■■□□□ 1.77
SHKBP1-223ENST00000600552 ESCO1Q5FWF5 840 aa26.08■■□□□ 1.77
SHKBP1-223ENST00000600552 SPATA31E1Q6ZUB1 1445 aa26.05■■□□□ 1.76
SHKBP1-223ENST00000600552 NGLY1Q96IV0 654 aa26.05■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms