RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 MYBBP1AQ9BQG0 1328 aaKnown RBP25.14■■□□□ 1.61
UPF1-207ENST00000599848 THEMISQ8N1K5 641 aaPredicted RBP25.14■■□□□ 1.61
UPF1-207ENST00000599848 ZKSCAN1P17029 563 aaPredicted RBP25.13■■□□□ 1.61
UPF1-207ENST00000599848 E9PSI1 815 aa25.12■■□□□ 1.61
UPF1-207ENST00000599848 RAD21O60216 631 aa25.12■■□□□ 1.61
UPF1-207ENST00000599848 G3BP1Q13283 466 aaKnown RBP eCLIP25.12■■□□□ 1.618e-7■■□□□ 14.1
UPF1-207ENST00000599848 GOLGA6L1Q8N7Z2 621 aa25.12■■□□□ 1.61
UPF1-207ENST00000599848 RNF20Q5VTR2 975 aa25.11■■□□□ 1.61
UPF1-207ENST00000599848 MYOM3Q5VTT5 1437 aa25.11■■□□□ 1.61
UPF1-207ENST00000599848 NLRP2Q9NX02 1062 aa25.11■■□□□ 1.61
UPF1-207ENST00000599848 IFIT2P09913 472 aaKnown RBP25.11■■□□□ 1.61
UPF1-207ENST00000599848 ZKSCAN2Q63HK3 967 aa25.11■■□□□ 1.61
UPF1-207ENST00000599848 GAPVD1Q14C86 1478 aa25.11■■□□□ 1.61
UPF1-207ENST00000599848 PROSER2Q86WR7 435 aaPredicted RBP25.11■■□□□ 1.61
UPF1-207ENST00000599848 R3HCC1Q9Y3T6 440 aaKnown RBP25.1■■□□□ 1.61
UPF1-207ENST00000599848 ANKRD20A12PQ8NF67 263 aa25.1■■□□□ 1.61
UPF1-207ENST00000599848 HOOK1Q9UJC3 728 aaKnown RBP25.09■■□□□ 1.61
UPF1-207ENST00000599848 EIF2S2P20042 333 aaKnown RBP25.08■■□□□ 1.61
UPF1-207ENST00000599848 MFAP1P55081 439 aaKnown RBP25.07■■□□□ 1.6
UPF1-207ENST00000599848 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.07■■□□□ 1.6
UPF1-207ENST00000599848 APPP05067 770 aa25.06■■□□□ 1.6
UPF1-207ENST00000599848 CCAR1Q8IX12 1150 aaKnown RBP25.06■■□□□ 1.6
UPF1-207ENST00000599848 CPLX1O14810 134 aa25.06■■□□□ 1.6
UPF1-207ENST00000599848 CREBRFQ8IUR6 639 aa25.06■■□□□ 1.6
UPF1-207ENST00000599848 CCDC146Q8IYE0 955 aa25.05■■□□□ 1.6
UPF1-207ENST00000599848 SMG6Q86US8 1419 aaKnown RBP25.04■■□□□ 1.6
UPF1-207ENST00000599848 PANK3Q9H999 370 aa25.04■■□□□ 1.6
UPF1-207ENST00000599848 GNAI1P63096 354 aa25.04■■□□□ 1.6
UPF1-207ENST00000599848 CLUAP1Q96AJ1 413 aa25.03■■□□□ 1.6
UPF1-207ENST00000599848 RILPL2Q969X0 211 aa25.03■■□□□ 1.6
UPF1-207ENST00000599848 ERC2O15083 957 aa25.02■■□□□ 1.6
UPF1-207ENST00000599848 REC8O95072 547 aa25.02■■□□□ 1.6
UPF1-207ENST00000599848 SPRYD3Q8NCJ5 442 aa25.02■■□□□ 1.6
UPF1-207ENST00000599848 WWC2Q6AWC2 1192 aa25.02■■□□□ 1.6
UPF1-207ENST00000599848 PES1O00541 588 aaKnown RBP25.01■■□□□ 1.59
UPF1-207ENST00000599848 IPO7O95373 1038 aaKnown RBP25.01■■□□□ 1.59
UPF1-207ENST00000599848 CCDC70Q6NSX1 233 aa25.01■■□□□ 1.59
UPF1-207ENST00000599848 PLEKHO1Q53GL0 409 aaPredicted RBP24.99■■□□□ 1.59
UPF1-207ENST00000599848 SAFBQ15424 915 aaKnown RBP eCLIP24.99■■□□□ 1.59
UPF1-207ENST00000599848 KIF6Q6ZMV9 814 aa24.99■■□□□ 1.59
UPF1-207ENST00000599848 DDX19BQ9UMR2 479 aa24.99■■□□□ 1.59
UPF1-207ENST00000599848 ST20-MTHFSA0A0A6YYL1 179 aa24.99■■□□□ 1.59
UPF1-207ENST00000599848 TXNDC2Q86VQ3 553 aa24.99■■□□□ 1.59
UPF1-207ENST00000599848 RIC3Q7Z5B4 369 aa24.98■■□□□ 1.59
UPF1-207ENST00000599848 FKBP5Q13451 457 aaPredicted RBP24.97■■□□□ 1.59
UPF1-207ENST00000599848 NLRP6P59044 892 aa24.97■■□□□ 1.59
UPF1-207ENST00000599848 GAS2L2Q8NHY3 880 aa24.97■■□□□ 1.59
UPF1-207ENST00000599848 BRMS1Q9HCU9 246 aa24.96■■□□□ 1.59
UPF1-207ENST00000599848 SLC3A2P08195 630 aaKnown RBP24.96■■□□□ 1.59
UPF1-207ENST00000599848 TSPYL4Q9UJ04 414 aa24.96■■□□□ 1.59
UPF1-207ENST00000599848 XBP1P17861 261 aa24.95■■□□□ 1.58
UPF1-207ENST00000599848 NFXL1Q6ZNB6 911 aa24.95■■□□□ 1.58
UPF1-207ENST00000599848 ANKLE2Q86XL3 938 aa24.94■■□□□ 1.58
UPF1-207ENST00000599848 TATP17735 454 aaPredicted RBP24.93■■□□□ 1.58
UPF1-207ENST00000599848 TBC1D2BQ9UPU7 963 aa24.93■■□□□ 1.58
UPF1-207ENST00000599848 GNL3LQ9NVN8 582 aaKnown RBP24.93■■□□□ 1.58
UPF1-207ENST00000599848 GOLGA6L19H0YKK7 550 aa24.93■■□□□ 1.58
UPF1-207ENST00000599848 PDE4CQ08493 712 aa24.93■■□□□ 1.58
UPF1-207ENST00000599848 AAMPQ13685 434 aa24.93■■□□□ 1.58
UPF1-207ENST00000599848 PLEKHH2Q8IVE3 1493 aa24.92■■□□□ 1.58
UPF1-207ENST00000599848 RALYLQ86SE5 291 aaKnown RBP24.92■■□□□ 1.58
UPF1-207ENST00000599848 RRBP1Q9P2E9 1410 aaKnown RBP24.92■■□□□ 1.58
UPF1-207ENST00000599848 FYCO1Q9BQS8 1478 aa24.92■■□□□ 1.58
UPF1-207ENST00000599848 ANKRD45Q5TZF3 282 aa24.91■■□□□ 1.58
UPF1-207ENST00000599848 ELL2O00472 640 aaPredicted RBP24.91■■□□□ 1.58
UPF1-207ENST00000599848 CUX1P39880 1505 aa24.91■■□□□ 1.58
UPF1-207ENST00000599848 SYNJ2O15056 1496 aa24.9■■□□□ 1.58
UPF1-207ENST00000599848 WDHD1O75717 1129 aaPredicted RBP24.9■■□□□ 1.58
UPF1-207ENST00000599848 BECN2A8MW95 431 aa24.9■■□□□ 1.58
UPF1-207ENST00000599848 RIPK4P57078 832 aa24.9■■□□□ 1.58
UPF1-207ENST00000599848 ESCO1Q5FWF5 840 aa24.9■■□□□ 1.58
UPF1-207ENST00000599848 SART3Q15020 963 aaKnown RBP24.89■■□□□ 1.58
UPF1-207ENST00000599848 GRIN2BQ13224 1484 aa24.89■■□□□ 1.57
UPF1-207ENST00000599848 RRP7AQ9Y3A4 280 aaKnown RBP24.88■■□□□ 1.57
UPF1-207ENST00000599848 CENPQQ7L2Z9 268 aaPredicted RBP24.88■■□□□ 1.57
UPF1-207ENST00000599848 PNISRQ8TF01 805 aaKnown RBP24.88■■□□□ 1.57
UPF1-207ENST00000599848 NOL8Q76FK4 1167 aaKnown RBP24.87■■□□□ 1.57
UPF1-207ENST00000599848 SMARCA4P51532 1647 aa24.87■■□□□ 1.57
UPF1-207ENST00000599848 MCTP1Q6DN14 999 aa24.87■■□□□ 1.57
UPF1-207ENST00000599848 RUNDC1Q96C34 613 aa24.87■■□□□ 1.57
UPF1-207ENST00000599848 DDX11L8A8MPP1 907 aa24.87■■□□□ 1.57
UPF1-207ENST00000599848 ABTB2Q8N961 1025 aa24.87■■□□□ 1.57
UPF1-207ENST00000599848 USP47Q96K76 1375 aa24.86■■□□□ 1.57
UPF1-207ENST00000599848 ZNF692Q9BU19 519 aaPredicted RBP24.85■■□□□ 1.57
UPF1-207ENST00000599848 CCDC27Q2M243 656 aa24.84■■□□□ 1.57
UPF1-207ENST00000599848 PCMTD1Q96MG8 357 aaPredicted RBP24.84■■□□□ 1.57
UPF1-207ENST00000599848 ANO2Q9NQ90 1003 aa24.84■■□□□ 1.57
UPF1-207ENST00000599848 IKQ13123 557 aaPredicted RBP24.84■■□□□ 1.57
UPF1-207ENST00000599848 SLC52A1Q9NWF4 448 aa24.84■■□□□ 1.57
UPF1-207ENST00000599848 RDXP35241 583 aaKnown RBP24.84■■□□□ 1.57
UPF1-207ENST00000599848 SPG7Q9UQ90 795 aa24.83■■□□□ 1.57
UPF1-207ENST00000599848 FGD5Q6ZNL6 1462 aa24.82■■□□□ 1.56
UPF1-207ENST00000599848 SLKQ9H2G2 1235 aaPredicted RBP24.82■■□□□ 1.56
UPF1-207ENST00000599848 SKOR2Q2VWA4 1001 aaPredicted RBP24.82■■□□□ 1.56
UPF1-207ENST00000599848 SCAPERQ9BY12 1400 aa24.81■■□□□ 1.56
UPF1-207ENST00000599848 CCDC30Q5VVM6 783 aa24.81■■□□□ 1.56
UPF1-207ENST00000599848 ARHGAP5Q13017 1502 aa24.8■■□□□ 1.56
UPF1-207ENST00000599848 NINLQ9Y2I6 1382 aa24.8■■□□□ 1.56
UPF1-207ENST00000599848 ODF2Q5BJF6 829 aa24.8■■□□□ 1.56
UPF1-207ENST00000599848 RBM42Q9BTD8 480 aaKnown RBP24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms