RNA–Protein interactions for RNA: ENST00000593280.2

NPC1-214, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 1 (best)

Gene NPC1, Length 1,607 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-214ENST00000593280 POLR3GLQ9BT43 218 aa16.53■□□□□ 0.24
NPC1-214ENST00000593280 NRXN1Q9ULB1 1477 aa16.51■□□□□ 0.23
NPC1-214ENST00000593280 CLTCQ00610 1675 aaKnown RBP16.51■□□□□ 0.23
NPC1-214ENST00000593280 SCAF11Q99590 1463 aaKnown RBP16.5■□□□□ 0.23
NPC1-214ENST00000593280 CHGAP10645 457 aaKnown RBP16.49■□□□□ 0.23
NPC1-214ENST00000593280 PPP6R1Q9UPN7 881 aa16.48■□□□□ 0.23
NPC1-214ENST00000593280 RPGRIP1LQ68CZ1 1315 aa16.47■□□□□ 0.23
NPC1-214ENST00000593280 ADGRF5Q8IZF2 1346 aa16.47■□□□□ 0.23
NPC1-214ENST00000593280 EIF3AQ14152 1382 aaKnown RBP16.46■□□□□ 0.23
NPC1-214ENST00000593280 SETBP1Q9Y6X0 1596 aa16.46■□□□□ 0.23
NPC1-214ENST00000593280 PRKRIP1Q9H875 184 aaPredicted RBP16.46■□□□□ 0.23
NPC1-214ENST00000593280 MYO5BQ9ULV0 1848 aa16.46■□□□□ 0.22
NPC1-214ENST00000593280 ERVK-7P63135 1459 aa16.45■□□□□ 0.22
NPC1-214ENST00000593280 TESK2Q96S53 571 aa16.45■□□□□ 0.22
NPC1-214ENST00000593280 NEXMIFQ5QGS0 1516 aa16.45■□□□□ 0.22
NPC1-214ENST00000593280 SCAF1Q9H7N4 1312 aaKnown RBP16.45■□□□□ 0.22
NPC1-214ENST00000593280 DISP3Q9P2K9 1392 aa16.44■□□□□ 0.22
NPC1-214ENST00000593280 PIK3C2GO75747 1445 aa16.44■□□□□ 0.22
NPC1-214ENST00000593280 SLC52A1Q9NWF4 448 aa16.44■□□□□ 0.22
NPC1-214ENST00000593280 TMEM131LA2VDJ0 1609 aa16.44■□□□□ 0.22
NPC1-214ENST00000593280 TMF1P82094 1093 aa16.43■□□□□ 0.22
NPC1-214ENST00000593280 CFAP70Q5T0N1 1121 aa16.42■□□□□ 0.22
NPC1-214ENST00000593280 MYO3AQ8NEV4 1616 aa16.42■□□□□ 0.22
NPC1-214ENST00000593280 SPATA31D1Q6ZQQ2 1576 aa16.41■□□□□ 0.22
NPC1-214ENST00000593280 IDI1Q13907 227 aa16.4■□□□□ 0.22
NPC1-214ENST00000593280 MLECQ14165 292 aa16.38■□□□□ 0.21
NPC1-214ENST00000593280 KDM5AP29375 1690 aaKnown RBP16.38■□□□□ 0.21
NPC1-214ENST00000593280 ADGRB1O14514 1584 aa16.38■□□□□ 0.21
NPC1-214ENST00000593280 VGFO15240 615 aaPredicted RBP16.37■□□□□ 0.21
NPC1-214ENST00000593280 FBXO31Q5XUX0 539 aaPredicted RBP16.37■□□□□ 0.21
NPC1-214ENST00000593280 GTF3C3Q9Y5Q9 886 aa16.37■□□□□ 0.21
NPC1-214ENST00000593280 ZFYVE9O95405 1425 aa16.36■□□□□ 0.21
NPC1-214ENST00000593280 C14orf93Q9H972 538 aaKnown RBP16.36■□□□□ 0.21
NPC1-214ENST00000593280 CDCA8Q53HL2 280 aa16.35■□□□□ 0.21
NPC1-214ENST00000593280 KTN1Q86UP2 1357 aaKnown RBP16.35■□□□□ 0.21
NPC1-214ENST00000593280 MYOM1P52179 1685 aa16.35■□□□□ 0.21
NPC1-214ENST00000593280 QRICH2Q9H0J4 1663 aa16.35■□□□□ 0.21
NPC1-214ENST00000593280 ESF1Q9H501 851 aaKnown RBP16.34■□□□□ 0.21
NPC1-214ENST00000593280 MRS2Q9HD23 443 aa16.34■□□□□ 0.21
NPC1-214ENST00000593280 SLC24A1O60721 1099 aa16.34■□□□□ 0.21
NPC1-214ENST00000593280 CCDC184Q52MB2 194 aa16.33■□□□□ 0.2
NPC1-214ENST00000593280 ARHGEF28Q8N1W1 1705 aaKnown RBP16.32■□□□□ 0.2
NPC1-214ENST00000593280 CNGB1Q14028 1251 aaPredicted RBP16.31■□□□□ 0.2
NPC1-214ENST00000593280 NUTM2DQ5VT03 806 aaPredicted RBP16.31■□□□□ 0.2
NPC1-214ENST00000593280 SBNO2Q9Y2G9 1366 aa16.31■□□□□ 0.2
NPC1-214ENST00000593280 ZMYM3Q14202 1370 aa16.3■□□□□ 0.2
NPC1-214ENST00000593280 RALBP1Q15311 655 aa16.3■□□□□ 0.2
NPC1-214ENST00000593280 STAG3Q9UJ98 1225 aa16.3■□□□□ 0.2
NPC1-214ENST00000593280 CENPJQ9HC77 1338 aaPredicted RBP16.29■□□□□ 0.2
NPC1-214ENST00000593280 A2ML1A8K2U0 1454 aa16.29■□□□□ 0.2
NPC1-214ENST00000593280 PANK3Q9H999 370 aa16.29■□□□□ 0.2
NPC1-214ENST00000593280 ASXL1Q8IXJ9 1541 aa16.28■□□□□ 0.2
NPC1-214ENST00000593280 PER1O15534 1290 aaPredicted RBP16.27■□□□□ 0.2
NPC1-214ENST00000593280 MYBBP1AQ9BQG0 1328 aaKnown RBP16.27■□□□□ 0.2
NPC1-214ENST00000593280 PARD3Q8TEW0 1356 aa16.27■□□□□ 0.19
NPC1-214ENST00000593280 TMEM132EQ6IEE7 984 aa16.27■□□□□ 0.19
NPC1-214ENST00000593280 TRAK1Q9UPV9 953 aa16.27■□□□□ 0.19
NPC1-214ENST00000593280 HNRNPUQ00839 825 aaKnown RBP eCLIP16.26■□□□□ 0.19
NPC1-214ENST00000593280 FAM9BQ8IZU0 186 aa16.25■□□□□ 0.19
NPC1-214ENST00000593280 FER1L4A9Z1Z3 1794 aa16.25■□□□□ 0.19
NPC1-214ENST00000593280 ALKQ9UM73 1620 aa16.25■□□□□ 0.19
NPC1-214ENST00000593280 BRD4O60885 1362 aaPredicted RBP16.24■□□□□ 0.19
NPC1-214ENST00000593280 TNRQ92752 1358 aa16.24■□□□□ 0.19
NPC1-214ENST00000593280 RIMS2Q9UQ26 1411 aa16.24■□□□□ 0.19
NPC1-214ENST00000593280 KDM4FA0A1W2PPD8 638 aa16.23■□□□□ 0.19
NPC1-214ENST00000593280 UBR1Q8IWV7 1749 aa16.22■□□□□ 0.19
NPC1-214ENST00000593280 SETD1AO15047 1707 aaKnown RBP16.21■□□□□ 0.19
NPC1-214ENST00000593280 TMC1Q8TDI8 760 aa16.21■□□□□ 0.19
NPC1-214ENST00000593280 C3P01024 1663 aa16.21■□□□□ 0.19
NPC1-214ENST00000593280 KNSTRNQ9Y448 316 aa16.2■□□□□ 0.18
NPC1-214ENST00000593280 CC2D1BQ5T0F9 858 aaKnown RBP16.19■□□□□ 0.18
NPC1-214ENST00000593280 NLRP13Q86W25 1043 aa16.19■□□□□ 0.18
NPC1-214ENST00000593280 YTHDC2Q9H6S0 1430 aaKnown RBP16.19■□□□□ 0.18
NPC1-214ENST00000593280 TULP4Q9NRJ4 1543 aa16.18■□□□□ 0.18
NPC1-214ENST00000593280 PTPRMP28827 1452 aa16.18■□□□□ 0.18
NPC1-214ENST00000593280 SENP3Q9H4L4 574 aaPredicted RBP16.18■□□□□ 0.18
NPC1-214ENST00000593280 NRXN3Q9Y4C0 1643 aa16.18■□□□□ 0.18
NPC1-214ENST00000593280 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.17■□□□□ 0.18
NPC1-214ENST00000593280 NLRP1Q9C000 1473 aa16.17■□□□□ 0.18
NPC1-214ENST00000593280 NPC1L1Q9UHC9 1359 aa16.16■□□□□ 0.18
NPC1-214ENST00000593280 EVC2Q86UK5 1308 aa16.16■□□□□ 0.18
NPC1-214ENST00000593280 PNISRQ8TF01 805 aaKnown RBP16.16■□□□□ 0.18
NPC1-214ENST00000593280 STK26Q9P289 416 aa16.16■□□□□ 0.18
NPC1-214ENST00000593280 ZBED9Q6R2W3 1325 aa16.15■□□□□ 0.18
NPC1-214ENST00000593280 AMER1Q5JTC6 1135 aaPredicted RBP16.15■□□□□ 0.18
NPC1-214ENST00000593280 DLC1Q96QB1 1528 aa16.14■□□□□ 0.17
NPC1-214ENST00000593280 LRPPRCP42704 1394 aaKnown RBP16.14■□□□□ 0.17
NPC1-214ENST00000593280 HDGFP51858 240 aaKnown RBP16.13■□□□□ 0.17
NPC1-214ENST00000593280 PUS7Q96PZ0 661 aaKnown RBP16.13■□□□□ 0.17
NPC1-214ENST00000593280 USP32Q8NFA0 1604 aa16.12■□□□□ 0.17
NPC1-214ENST00000593280 TMEM2Q9UHN6 1383 aa16.12■□□□□ 0.17
NPC1-214ENST00000593280 KNDC1Q76NI1 1749 aa16.12■□□□□ 0.17
NPC1-214ENST00000593280 SAFB2Q14151 953 aaKnown RBP eCLIP16.1■□□□□ 0.17
NPC1-214ENST00000593280 PRAM1Q96QH2 718 aa16.1■□□□□ 0.17
NPC1-214ENST00000593280 POGKQ9P215 609 aa16.1■□□□□ 0.17
NPC1-214ENST00000593280 CEBPAP49715 358 aaPredicted RBP16.09■□□□□ 0.17
NPC1-214ENST00000593280 NSD3Q9BZ95 1437 aa16.08■□□□□ 0.17
NPC1-214ENST00000593280 NINLQ9Y2I6 1382 aa16.08■□□□□ 0.16
NPC1-214ENST00000593280 RIMS1Q86UR5 1692 aaKnown RBP16.08■□□□□ 0.16
NPC1-214ENST00000593280 CARD14Q9BXL6 1004 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms