RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 FOXD1Q16676 465 aa19.51■□□□□ 0.71
VMP1-217ENST00000593168 SCAF11Q99590 1463 aaKnown RBP19.5■□□□□ 0.71
VMP1-217ENST00000593168 ARHGAP23Q9P227 1491 aa19.49■□□□□ 0.71
VMP1-217ENST00000593168 SLIT1O75093 1534 aa19.49■□□□□ 0.71
VMP1-217ENST00000593168 PRDM15P57071 1507 aaPredicted RBP19.49■□□□□ 0.71
VMP1-217ENST00000593168 LTKP29376 864 aa19.48■□□□□ 0.71
VMP1-217ENST00000593168 PIK3C2BO00750 1634 aa19.46■□□□□ 0.71
VMP1-217ENST00000593168 ARHGAP31Q2M1Z3 1444 aa19.44■□□□□ 0.7
VMP1-217ENST00000593168 TXNDC2Q86VQ3 553 aa19.44■□□□□ 0.7
VMP1-217ENST00000593168 RPRD2Q5VT52 1461 aaKnown RBP19.43■□□□□ 0.7
VMP1-217ENST00000593168 LMTK2Q8IWU2 1503 aa19.43■□□□□ 0.7
VMP1-217ENST00000593168 RGS17Q9UGC6 210 aaPredicted RBP19.43■□□□□ 0.7
VMP1-217ENST00000593168 TONSLQ96HA7 1378 aa19.43■□□□□ 0.7
VMP1-217ENST00000593168 TET3O43151 1660 aa19.43■□□□□ 0.7
VMP1-217ENST00000593168 PPP1R15AO75807 674 aaPredicted RBP19.38■□□□□ 0.69
VMP1-217ENST00000593168 EID1Q9Y6B2 187 aa19.38■□□□□ 0.69
VMP1-217ENST00000593168 E9PCH4 1651 aa19.37■□□□□ 0.69
VMP1-217ENST00000593168 KDM5AP29375 1690 aaKnown RBP19.37■□□□□ 0.69
VMP1-217ENST00000593168 TMEM2Q9UHN6 1383 aa19.37■□□□□ 0.69
VMP1-217ENST00000593168 EFCAB6Q5THR3 1501 aa19.35■□□□□ 0.69
VMP1-217ENST00000593168 FAM135BQ49AJ0 1406 aa19.35■□□□□ 0.69
VMP1-217ENST00000593168 ROBO1Q9Y6N7 1651 aa19.35■□□□□ 0.69
VMP1-217ENST00000593168 CCDC144AA2RUR9 1427 aa19.34■□□□□ 0.69
VMP1-217ENST00000593168 TMEM94Q12767 1356 aa19.33■□□□□ 0.69
VMP1-217ENST00000593168 L3MBTL2Q969R5 705 aa19.32■□□□□ 0.68
VMP1-217ENST00000593168 IDI1Q13907 227 aa19.31■□□□□ 0.68
VMP1-217ENST00000593168 STAG3Q9UJ98 1225 aa19.31■□□□□ 0.68
VMP1-217ENST00000593168 RBM33Q96EV2 1170 aaKnown RBP19.3■□□□□ 0.68
VMP1-217ENST00000593168 TRPM2O94759 1503 aa19.3■□□□□ 0.68
VMP1-217ENST00000593168 SPHKAPQ2M3C7 1700 aa19.29■□□□□ 0.68
VMP1-217ENST00000593168 NWD1Q149M9 1564 aa19.29■□□□□ 0.68
VMP1-217ENST00000593168 KCNA6P17658 529 aa19.29■□□□□ 0.68
VMP1-217ENST00000593168 POTEAQ6S8J7 498 aa19.29■□□□□ 0.68
VMP1-217ENST00000593168 SLC26A8Q96RN1 970 aa19.29■□□□□ 0.68
VMP1-217ENST00000593168 ADGRB3O60242 1522 aa19.28■□□□□ 0.68
VMP1-217ENST00000593168 PROSER2Q86WR7 435 aaPredicted RBP19.27■□□□□ 0.68
VMP1-217ENST00000593168 NOS1P29475 1434 aa19.26■□□□□ 0.67
VMP1-217ENST00000593168 MYO5BQ9ULV0 1848 aa19.26■□□□□ 0.67
VMP1-217ENST00000593168 NKTRP30414 1462 aaKnown RBP19.25■□□□□ 0.67
VMP1-217ENST00000593168 PHLPP1O60346 1717 aa19.24■□□□□ 0.67
VMP1-217ENST00000593168 SETD1AO15047 1707 aaKnown RBP19.23■□□□□ 0.67
VMP1-217ENST00000593168 CHD2O14647 1828 aaKnown RBP19.23■□□□□ 0.67
VMP1-217ENST00000593168 CLTCL1P53675 1640 aa19.21■□□□□ 0.67
VMP1-217ENST00000593168 SPATA31E1Q6ZUB1 1445 aa19.2■□□□□ 0.66
VMP1-217ENST00000593168 MSH6P52701 1360 aa19.19■□□□□ 0.66
VMP1-217ENST00000593168 ZFYVE9O95405 1425 aa19.18■□□□□ 0.66
VMP1-217ENST00000593168 BCANQ96GW7 911 aa19.18■□□□□ 0.66
VMP1-217ENST00000593168 STAC3Q96MF2 364 aa19.17■□□□□ 0.66
VMP1-217ENST00000593168 SLC52A1Q9NWF4 448 aa19.17■□□□□ 0.66
VMP1-217ENST00000593168 SLAIN2Q9P270 581 aa19.17■□□□□ 0.66
VMP1-217ENST00000593168 COL16A1Q07092 1604 aaPredicted RBP19.16■□□□□ 0.66
VMP1-217ENST00000593168 ZNF316A6NFI3 1004 aaPredicted RBP19.16■□□□□ 0.66
VMP1-217ENST00000593168 NBPF8Q3BBV2 869 aa19.16■□□□□ 0.66
VMP1-217ENST00000593168 RGL3Q3MIN7 710 aa19.16■□□□□ 0.66
VMP1-217ENST00000593168 TMEM131LA2VDJ0 1609 aa19.15■□□□□ 0.66
VMP1-217ENST00000593168 DCAF11Q8TEB1 546 aa19.15■□□□□ 0.66
VMP1-217ENST00000593168 PLEKHG1Q9ULL1 1385 aa19.15■□□□□ 0.66
VMP1-217ENST00000593168 JCADQ9P266 1359 aa19.14■□□□□ 0.65
VMP1-217ENST00000593168 RIMS2Q9UQ26 1411 aa19.14■□□□□ 0.65
VMP1-217ENST00000593168 KIF1BO60333 1816 aa19.14■□□□□ 0.65
VMP1-217ENST00000593168 KDM2AQ9Y2K7 1162 aa19.11■□□□□ 0.65
VMP1-217ENST00000593168 LRP6O75581 1613 aa19.11■□□□□ 0.65
VMP1-217ENST00000593168 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.1■□□□□ 0.65
VMP1-217ENST00000593168 PRAG1Q86YV5 1406 aa19.08■□□□□ 0.64
VMP1-217ENST00000593168 RPGRIP1LQ68CZ1 1315 aa19.07■□□□□ 0.64
VMP1-217ENST00000593168 TBX22Q9Y458 520 aa19.07■□□□□ 0.64
VMP1-217ENST00000593168 SHPRHQ149N8 1683 aa19.07■□□□□ 0.64
VMP1-217ENST00000593168 ADAMTS13Q76LX8 1427 aa19.07■□□□□ 0.64
VMP1-217ENST00000593168 NCOA3Q9Y6Q9 1424 aa19.07■□□□□ 0.64
VMP1-217ENST00000593168 AHDC1Q5TGY3 1603 aaPredicted RBP19.06■□□□□ 0.64
VMP1-217ENST00000593168 CHGAP10645 457 aaKnown RBP19.05■□□□□ 0.64
VMP1-217ENST00000593168 HDGFP51858 240 aaKnown RBP19.05■□□□□ 0.64
VMP1-217ENST00000593168 ZNF326Q5BKZ1 582 aaKnown RBP19.05■□□□□ 0.64
VMP1-217ENST00000593168 NUTM2DQ5VT03 806 aaPredicted RBP19.05■□□□□ 0.64
VMP1-217ENST00000593168 DIP2AQ14689 1571 aa19.05■□□□□ 0.64
VMP1-217ENST00000593168 RALGAPBQ86X10 1494 aa19.04■□□□□ 0.64
VMP1-217ENST00000593168 SPATA31A6Q5VVP1 1343 aa19.03■□□□□ 0.64
VMP1-217ENST00000593168 MYOM2P54296 1465 aa19.03■□□□□ 0.64
VMP1-217ENST00000593168 C14orf37Q86TY3 774 aa19.02■□□□□ 0.64
VMP1-217ENST00000593168 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.02■□□□□ 0.64
VMP1-217ENST00000593168 EIF4G2P78344 907 aaKnown RBP eCLIP19.01■□□□□ 0.63
VMP1-217ENST00000593168 IFT172Q9UG01 1749 aa19■□□□□ 0.63
VMP1-217ENST00000593168 MEX3CQ5U5Q3 659 aaKnown RBP19■□□□□ 0.63
VMP1-217ENST00000593168 C19orf44Q9H6X5 657 aa19■□□□□ 0.63
VMP1-217ENST00000593168 PTPRUQ92729 1446 aa19■□□□□ 0.63
VMP1-217ENST00000593168 PIK3R4Q99570 1358 aa18.99■□□□□ 0.63
VMP1-217ENST00000593168 CADPS2Q86UW7 1296 aa18.99■□□□□ 0.63
VMP1-217ENST00000593168 ATF3P18847 181 aa18.98■□□□□ 0.63
VMP1-217ENST00000593168 ZNF772Q68DY9 489 aaPredicted RBP18.98■□□□□ 0.63
VMP1-217ENST00000593168 UPF1Q92900 1129 aaKnown RBP eCLIP18.98■□□□□ 0.63
VMP1-217ENST00000593168 TRPM1Q7Z4N2 1603 aa18.98■□□□□ 0.63
VMP1-217ENST00000593168 NRXN1Q9ULB1 1477 aa18.97■□□□□ 0.63
VMP1-217ENST00000593168 GPRASP1Q5JY77 1395 aa18.97■□□□□ 0.63
VMP1-217ENST00000593168 NRXN3Q9Y4C0 1643 aa18.96■□□□□ 0.63
VMP1-217ENST00000593168 PPLO60437 1756 aa18.96■□□□□ 0.63
VMP1-217ENST00000593168 VGFO15240 615 aaPredicted RBP18.96■□□□□ 0.63
VMP1-217ENST00000593168 HSPA5P11021 654 aaKnown RBP18.96■□□□□ 0.63
VMP1-217ENST00000593168 BRINP3Q76B58 766 aa18.96■□□□□ 0.63
VMP1-217ENST00000593168 CARD11Q9BXL7 1154 aa18.96■□□□□ 0.63
VMP1-217ENST00000593168 AMOTL2Q9Y2J4 779 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms