RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 C14orf37Q86TY3 774 aa17.48■□□□□ 0.39
ZNF540-209ENST00000590588 CADPS2Q86UW7 1296 aa17.48■□□□□ 0.39
ZNF540-209ENST00000590588 RRP7BPQ9NSQ0 103 aa17.48■□□□□ 0.39
ZNF540-209ENST00000590588 SLC52A1Q9NWF4 448 aa17.48■□□□□ 0.39
ZNF540-209ENST00000590588 NUTM2BA6NNL0 878 aaPredicted RBP17.47■□□□□ 0.39
ZNF540-209ENST00000590588 NUTM2EB1AL46 878 aaPredicted RBP17.47■□□□□ 0.39
ZNF540-209ENST00000590588 NUTM2AQ8IVF1 878 aaPredicted RBP17.47■□□□□ 0.39
ZNF540-209ENST00000590588 KIF15Q9NS87 1388 aa17.47■□□□□ 0.39
ZNF540-209ENST00000590588 MYOM3Q5VTT5 1437 aa17.47■□□□□ 0.39
ZNF540-209ENST00000590588 ERBINQ96RT1 1412 aa17.47■□□□□ 0.39
ZNF540-209ENST00000590588 ATF3P18847 181 aa17.46■□□□□ 0.39
ZNF540-209ENST00000590588 C19orf44Q9H6X5 657 aa17.46■□□□□ 0.39
ZNF540-209ENST00000590588 AFF2P51816 1311 aa17.45■□□□□ 0.38
ZNF540-209ENST00000590588 TBX22Q9Y458 520 aa17.44■□□□□ 0.38
ZNF540-209ENST00000590588 PPP1R15AO75807 674 aaPredicted RBP17.43■□□□□ 0.38
ZNF540-209ENST00000590588 FOXD1Q16676 465 aa17.43■□□□□ 0.38
ZNF540-209ENST00000590588 AHDC1Q5TGY3 1603 aaPredicted RBP17.43■□□□□ 0.38
ZNF540-209ENST00000590588 SHPRHQ149N8 1683 aa17.42■□□□□ 0.38
ZNF540-209ENST00000590588 PLEKHG1Q9ULL1 1385 aa17.42■□□□□ 0.38
ZNF540-209ENST00000590588 RBM6P78332 1123 aaKnown RBP17.42■□□□□ 0.38
ZNF540-209ENST00000590588 QTRT2Q9H974 415 aaKnown RBP17.42■□□□□ 0.38
ZNF540-209ENST00000590588 NOS1P29475 1434 aa17.41■□□□□ 0.38
ZNF540-209ENST00000590588 NUTM2DQ5VT03 806 aaPredicted RBP17.41■□□□□ 0.38
ZNF540-209ENST00000590588 CHD2O14647 1828 aaKnown RBP17.41■□□□□ 0.38
ZNF540-209ENST00000590588 ADGRB3O60242 1522 aa17.4■□□□□ 0.38
ZNF540-209ENST00000590588 LMTK2Q8IWU2 1503 aa17.4■□□□□ 0.38
ZNF540-209ENST00000590588 BRINP3Q76B58 766 aa17.39■□□□□ 0.37
ZNF540-209ENST00000590588 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.37■□□□□ 0.37
ZNF540-209ENST00000590588 LRRC59Q96AG4 307 aaKnown RBP17.37■□□□□ 0.37
ZNF540-209ENST00000590588 ZRANB1Q9UGI0 708 aa17.37■□□□□ 0.37
ZNF540-209ENST00000590588 ABCC5O15440 1437 aa17.37■□□□□ 0.37
ZNF540-209ENST00000590588 ZFYVE9O95405 1425 aa17.37■□□□□ 0.37
ZNF540-209ENST00000590588 NGLY1Q96IV0 654 aa17.36■□□□□ 0.37
ZNF540-209ENST00000590588 C8orf37Q96NL8 207 aa17.36■□□□□ 0.37
ZNF540-209ENST00000590588 RGS12O14924 1447 aa17.36■□□□□ 0.37
ZNF540-209ENST00000590588 RIMS2Q9UQ26 1411 aa17.36■□□□□ 0.37
ZNF540-209ENST00000590588 KANK4Q5T7N3 995 aaPredicted RBP17.35■□□□□ 0.37
ZNF540-209ENST00000590588 PIK3R4Q99570 1358 aa17.34■□□□□ 0.37
ZNF540-209ENST00000590588 SETD5Q9C0A6 1442 aa17.34■□□□□ 0.37
ZNF540-209ENST00000590588 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.34■□□□□ 0.37
ZNF540-209ENST00000590588 DIP2AQ14689 1571 aa17.33■□□□□ 0.37
ZNF540-209ENST00000590588 ATAD2Q6PL18 1390 aa17.32■□□□□ 0.36
ZNF540-209ENST00000590588 AMOTL2Q9Y2J4 779 aa17.32■□□□□ 0.36
ZNF540-209ENST00000590588 ANKRD30AQ9BXX3 1397 aa17.31■□□□□ 0.36
ZNF540-209ENST00000590588 CHGAP10645 457 aaKnown RBP17.3■□□□□ 0.36
ZNF540-209ENST00000590588 CHIC2Q9UKJ5 165 aa17.3■□□□□ 0.36
ZNF540-209ENST00000590588 RPRD2Q5VT52 1461 aaKnown RBP17.29■□□□□ 0.36
ZNF540-209ENST00000590588 DAPK1P53355 1430 aa17.29■□□□□ 0.36
ZNF540-209ENST00000590588 ADAMTS13Q76LX8 1427 aa17.29■□□□□ 0.36
ZNF540-209ENST00000590588 DCCP43146 1447 aa17.28■□□□□ 0.36
ZNF540-209ENST00000590588 CCDC125Q86Z20 511 aa17.27■□□□□ 0.36
ZNF540-209ENST00000590588 ASXL1Q8IXJ9 1541 aa17.26■□□□□ 0.35
ZNF540-209ENST00000590588 CROCC2H7BZ55 1655 aa17.26■□□□□ 0.35
ZNF540-209ENST00000590588 VPS8Q8N3P4 1428 aa17.25■□□□□ 0.35
ZNF540-209ENST00000590588 ADAMTS2O95450 1211 aa17.25■□□□□ 0.35
ZNF540-209ENST00000590588 TRPC5Q9UL62 973 aaPredicted RBP17.25■□□□□ 0.35
ZNF540-209ENST00000590588 PNPLA6Q8IY17 1366 aa17.25■□□□□ 0.35
ZNF540-209ENST00000590588 TMEM131LA2VDJ0 1609 aa17.25■□□□□ 0.35
ZNF540-209ENST00000590588 USP21Q9UK80 565 aa17.24■□□□□ 0.35
ZNF540-209ENST00000590588 DDX17Q92841 729 aaKnown RBP17.23■□□□□ 0.35
ZNF540-209ENST00000590588 MST1RQ04912 1400 aa17.22■□□□□ 0.35
ZNF540-209ENST00000590588 PTPN23Q9H3S7 1636 aa17.22■□□□□ 0.35
ZNF540-209ENST00000590588 MYO5BQ9ULV0 1848 aa17.22■□□□□ 0.35
ZNF540-209ENST00000590588 PTPRUQ92729 1446 aa17.21■□□□□ 0.35
ZNF540-209ENST00000590588 GCC2Q8IWJ2 1684 aa17.21■□□□□ 0.35
ZNF540-209ENST00000590588 TRPM2O94759 1503 aa17.21■□□□□ 0.34
ZNF540-209ENST00000590588 SETBP1Q9Y6X0 1596 aa17.2■□□□□ 0.34
ZNF540-209ENST00000590588 FNBP4Q8N3X1 1017 aaPredicted RBP17.2■□□□□ 0.34
ZNF540-209ENST00000590588 NHSL1Q5SYE7 1610 aa17.2■□□□□ 0.34
ZNF540-209ENST00000590588 EP400Q96L91 3159 aa17.16■□□□□ 0.34
ZNF540-209ENST00000590588 ANKRD50Q9ULJ7 1429 aa17.15■□□□□ 0.34
ZNF540-209ENST00000590588 APLP2Q06481 763 aa17.14■□□□□ 0.33
ZNF540-209ENST00000590588 PTCH1Q13635 1447 aa17.13■□□□□ 0.33
ZNF540-209ENST00000590588 SOS2Q07890 1332 aaPredicted RBP17.13■□□□□ 0.33
ZNF540-209ENST00000590588 ATRNO75882 1429 aa17.13■□□□□ 0.33
ZNF540-209ENST00000590588 ADGRL2O95490 1459 aa17.12■□□□□ 0.33
ZNF540-209ENST00000590588 ADGRL3Q9HAR2 1447 aa17.11■□□□□ 0.33
ZNF540-209ENST00000590588 UNC13BO14795 1591 aa17.1■□□□□ 0.33
ZNF540-209ENST00000590588 GJD4Q96KN9 370 aaPredicted RBP17.09■□□□□ 0.33
ZNF540-209ENST00000590588 METP08581 1390 aa17.09■□□□□ 0.33
ZNF540-209ENST00000590588 C1orf167Q5SNV9 1468 aa17.09■□□□□ 0.33
ZNF540-209ENST00000590588 XRN1Q8IZH2 1706 aaKnown RBP17.09■□□□□ 0.33
ZNF540-209ENST00000590588 ORAI2Q96SN7 254 aa17.08■□□□□ 0.32
ZNF540-209ENST00000590588 BLMP54132 1417 aaPredicted RBP17.06■□□□□ 0.32
ZNF540-209ENST00000590588 SF3B2Q13435 895 aaKnown RBP17.06■□□□□ 0.32
ZNF540-209ENST00000590588 ZNF326Q5BKZ1 582 aaKnown RBP17.06■□□□□ 0.32
ZNF540-209ENST00000590588 FAM50AQ14320 339 aaKnown RBP17.05■□□□□ 0.32
ZNF540-209ENST00000590588 BCL9LQ86UU0 1499 aa17.05■□□□□ 0.32
ZNF540-209ENST00000590588 DEFB132Q7Z7B7 95 aa17.04■□□□□ 0.32
ZNF540-209ENST00000590588 LAMC1P11047 1609 aa17.03■□□□□ 0.32
ZNF540-209ENST00000590588 E9PCH4 1651 aa17.03■□□□□ 0.32
ZNF540-209ENST00000590588 NRXN3Q9Y4C0 1643 aa17.03■□□□□ 0.32
ZNF540-209ENST00000590588 LOC105371045A0A1W2PR82 267 aa17.02■□□□□ 0.32
ZNF540-209ENST00000590588 NPHP3Q7Z494 1330 aa16.99■□□□□ 0.31
ZNF540-209ENST00000590588 NALCNQ8IZF0 1738 aa16.99■□□□□ 0.31
ZNF540-209ENST00000590588 UNC5CLQ8IV45 518 aa16.99■□□□□ 0.31
ZNF540-209ENST00000590588 COL22A1Q8NFW1 1626 aaPredicted RBP16.99■□□□□ 0.31
ZNF540-209ENST00000590588 MYOM2P54296 1465 aa16.99■□□□□ 0.31
ZNF540-209ENST00000590588 NUP155O75694 1391 aa16.98■□□□□ 0.31
ZNF540-209ENST00000590588 ESCO1Q5FWF5 840 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms