RNA–Protein interactions for RNA: ENST00000588815.5

CAPNS1-206, Transcript of calpain small subunit 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CAPNS1, Length 1,471 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPNS1-206ENST00000588815 UBR1Q8IWV7 1749 aa43.93■■■■■ 4.62
CAPNS1-206ENST00000588815 ZFYVE9O95405 1425 aa43.93■■■■■ 4.62
CAPNS1-206ENST00000588815 A2ML1A8K2U0 1454 aa43.93■■■■■ 4.62
CAPNS1-206ENST00000588815 STAG3Q9UJ98 1225 aa43.91■■■■■ 4.62
CAPNS1-206ENST00000588815 SETD1BQ9UPS6 1966 aaKnown RBP43.91■■■■■ 4.62
CAPNS1-206ENST00000588815 GPRASP1Q5JY77 1395 aa43.91■■■■■ 4.62
CAPNS1-206ENST00000588815 EIF4G2P78344 907 aaKnown RBP eCLIP43.9■■■■■ 4.62
CAPNS1-206ENST00000588815 ROCK2O75116 1388 aaKnown RBP43.88■■■■■ 4.62
CAPNS1-206ENST00000588815 CEBPAP49715 358 aaPredicted RBP43.88■■■■■ 4.61
CAPNS1-206ENST00000588815 VGFO15240 615 aaPredicted RBP43.87■■■■■ 4.61
CAPNS1-206ENST00000588815 MYO3AQ8NEV4 1616 aa43.84■■■■■ 4.61
CAPNS1-206ENST00000588815 PIK3C2GO75747 1445 aa43.82■■■■■ 4.61
CAPNS1-206ENST00000588815 ADGRF5Q8IZF2 1346 aa43.81■■■■■ 4.6
CAPNS1-206ENST00000588815 CARD11Q9BXL7 1154 aa43.81■■■■■ 4.6
CAPNS1-206ENST00000588815 SETBP1Q9Y6X0 1596 aa43.77■■■■■ 4.6
CAPNS1-206ENST00000588815 HSPA5P11021 654 aaKnown RBP43.76■■■■■ 4.6
CAPNS1-206ENST00000588815 USP47Q96K76 1375 aa43.76■■■■■ 4.6
CAPNS1-206ENST00000588815 POLR1AO95602 1720 aaPredicted RBP43.73■■■■■ 4.59
CAPNS1-206ENST00000588815 IQGAP1P46940 1657 aa43.73■■■■■ 4.59
CAPNS1-206ENST00000588815 ZNF142P52746 1687 aaPredicted RBP43.73■■■■■ 4.59
CAPNS1-206ENST00000588815 RIMS2Q9UQ26 1411 aa43.72■■■■■ 4.59
CAPNS1-206ENST00000588815 HDGFP51858 240 aaKnown RBP43.7■■■■■ 4.59
CAPNS1-206ENST00000588815 NBPF1Q3BBV0 1214 aa43.7■■■■■ 4.59
CAPNS1-206ENST00000588815 PTPRMP28827 1452 aa43.7■■■■■ 4.59
CAPNS1-206ENST00000588815 ABCF1Q8NE71 845 aaKnown RBP eCLIP43.7■■■■■ 4.59
CAPNS1-206ENST00000588815 CEP170BQ9Y4F5 1589 aaPredicted RBP43.67■■■■■ 4.58
CAPNS1-206ENST00000588815 C14orf93Q9H972 538 aaKnown RBP43.65■■■■■ 4.58
CAPNS1-206ENST00000588815 TMEM2Q9UHN6 1383 aa43.64■■■■■ 4.58
CAPNS1-206ENST00000588815 SLIT1O75093 1534 aa43.62■■■■■ 4.57
CAPNS1-206ENST00000588815 PLPPR3Q6T4P5 718 aa43.62■■■■■ 4.57
CAPNS1-206ENST00000588815 CFAP70Q5T0N1 1121 aa43.61■■■■■ 4.57
CAPNS1-206ENST00000588815 SCAF11Q99590 1463 aaKnown RBP43.6■■■■■ 4.57
CAPNS1-206ENST00000588815 HIRIP3Q9BW71 556 aaPredicted RBP43.58■■■■■ 4.57
CAPNS1-206ENST00000588815 ARHGAP23Q9P227 1491 aa43.58■■■■■ 4.57
CAPNS1-206ENST00000588815 ADGRB1O14514 1584 aa43.57■■■■■ 4.56
CAPNS1-206ENST00000588815 THEMISQ8N1K5 641 aaPredicted RBP43.56■■■■■ 4.56
CAPNS1-206ENST00000588815 NUTM2DQ5VT03 806 aaPredicted RBP43.55■■■■■ 4.56
CAPNS1-206ENST00000588815 ALKQ9UM73 1620 aa43.52■■■■■ 4.56
CAPNS1-206ENST00000588815 EIF3AQ14152 1382 aaKnown RBP43.51■■■■■ 4.56
CAPNS1-206ENST00000588815 SETD1AO15047 1707 aaKnown RBP43.5■■■■■ 4.55
CAPNS1-206ENST00000588815 NRXN3Q9Y4C0 1643 aa43.48■■■■■ 4.55
CAPNS1-206ENST00000588815 ST20-MTHFSA0A0A6YYL1 179 aa43.45■■■■■ 4.55
CAPNS1-206ENST00000588815 EID1Q9Y6B2 187 aa43.44■■■■■ 4.54
CAPNS1-206ENST00000588815 DIEXFQ68CQ4 756 aaKnown RBP43.43■■■■■ 4.54
CAPNS1-206ENST00000588815 PLEKHG1Q9ULL1 1385 aa43.4■■■■■ 4.54
CAPNS1-206ENST00000588815 ASXL1Q8IXJ9 1541 aa43.4■■■■■ 4.54
CAPNS1-206ENST00000588815 ARHGEF28Q8N1W1 1705 aaKnown RBP43.38■■■■■ 4.53
CAPNS1-206ENST00000588815 SLC24A1O60721 1099 aa43.35■■■■■ 4.53
CAPNS1-206ENST00000588815 TXNDC2Q86VQ3 553 aa43.35■■■■■ 4.53
CAPNS1-206ENST00000588815 CCDC7Q96M83 1385 aa43.34■■■■■ 4.53
CAPNS1-206ENST00000588815 WASHC2AQ641Q2 1341 aa43.33■■■■■ 4.53
CAPNS1-206ENST00000588815 LTKP29376 864 aa43.31■■■■■ 4.52
CAPNS1-206ENST00000588815 DIP2AQ14689 1571 aa43.29■■■■■ 4.52
CAPNS1-206ENST00000588815 TMEM132EQ6IEE7 984 aa43.29■■■■■ 4.52
CAPNS1-206ENST00000588815 TESK2Q96S53 571 aa43.28■■■■■ 4.52
CAPNS1-206ENST00000588815 KDM4FA0A1W2PPD8 638 aa43.27■■■■■ 4.52
CAPNS1-206ENST00000588815 QRICH2Q9H0J4 1663 aa43.27■■■■■ 4.52
CAPNS1-206ENST00000588815 SBNO2Q9Y2G9 1366 aa43.27■■■■■ 4.52
CAPNS1-206ENST00000588815 YTHDC2Q9H6S0 1430 aaKnown RBP43.26■■■■■ 4.52
CAPNS1-206ENST00000588815 KNDC1Q76NI1 1749 aa43.26■■■■■ 4.52
CAPNS1-206ENST00000588815 C11orf95C9JLR9 678 aaPredicted RBP43.25■■■■■ 4.51
CAPNS1-206ENST00000588815 KIF7Q2M1P5 1343 aa43.25■■■■■ 4.51
CAPNS1-206ENST00000588815 ADAMTS13Q76LX8 1427 aa43.23■■■■■ 4.51
CAPNS1-206ENST00000588815 MED14O60244 1454 aa43.23■■■■■ 4.51
CAPNS1-206ENST00000588815 DLC1Q96QB1 1528 aa43.22■■■■■ 4.51
CAPNS1-206ENST00000588815 TMF1P82094 1093 aa43.2■■■■■ 4.51
CAPNS1-206ENST00000588815 TRAK1Q9UPV9 953 aa43.2■■■■■ 4.51
CAPNS1-206ENST00000588815 CENPJQ9HC77 1338 aaPredicted RBP43.19■■■■■ 4.51
CAPNS1-206ENST00000588815 LRPPRCP42704 1394 aaKnown RBP43.19■■■■■ 4.5
CAPNS1-206ENST00000588815 ANKLE2Q86XL3 938 aa43.19■■■■■ 4.5
CAPNS1-206ENST00000588815 DDX10Q13206 875 aaKnown RBP43.18■■■■■ 4.5
CAPNS1-206ENST00000588815 BCANQ96GW7 911 aa43.18■■■■■ 4.5
CAPNS1-206ENST00000588815 ABCC11Q96J66 1382 aa43.14■■■■■ 4.5
CAPNS1-206ENST00000588815 CDCA8Q53HL2 280 aa43.13■■■■■ 4.49
CAPNS1-206ENST00000588815 TBX22Q9Y458 520 aa43.12■■■■■ 4.49
CAPNS1-206ENST00000588815 SENP3Q9H4L4 574 aaPredicted RBP43.11■■■■■ 4.49
CAPNS1-206ENST00000588815 METP08581 1390 aa43.11■■■■■ 4.49
CAPNS1-206ENST00000588815 TECPR2O15040 1411 aa43.1■■■■■ 4.49
CAPNS1-206ENST00000588815 DISP3Q9P2K9 1392 aa43.08■■■■■ 4.49
CAPNS1-206ENST00000588815 CPS1P31327 1500 aa43.08■■■■■ 4.49
CAPNS1-206ENST00000588815 STK26Q9P289 416 aa43.05■■■■■ 4.48
CAPNS1-206ENST00000588815 SIRT1Q96EB6 747 aa43.04■■■■■ 4.48
CAPNS1-206ENST00000588815 PIK3R4Q99570 1358 aa43.03■■■■■ 4.48
CAPNS1-206ENST00000588815 FAM135BQ49AJ0 1406 aa43.01■■■■■ 4.48
CAPNS1-206ENST00000588815 SLC26A8Q96RN1 970 aa42.97■■■■■ 4.47
CAPNS1-206ENST00000588815 NPHP4O75161 1426 aaPredicted RBP42.96■■■■■ 4.47
CAPNS1-206ENST00000588815 CHD2O14647 1828 aaKnown RBP42.96■■■■■ 4.47
CAPNS1-206ENST00000588815 POGKQ9P215 609 aa42.95■■■■■ 4.47
CAPNS1-206ENST00000588815 XRN1Q8IZH2 1706 aaKnown RBP42.95■■■■■ 4.47
CAPNS1-206ENST00000588815 POLR3GLQ9BT43 218 aa42.94■■■■■ 4.47
CAPNS1-206ENST00000588815 PRAM1Q96QH2 718 aa42.94■■■■■ 4.46
CAPNS1-206ENST00000588815 PUS7Q96PZ0 661 aaKnown RBP42.93■■■■■ 4.46
CAPNS1-206ENST00000588815 LMTK3Q96Q04 1460 aa42.9■■■■■ 4.46
CAPNS1-206ENST00000588815 MYOM1P52179 1685 aa42.89■■■■■ 4.46
CAPNS1-206ENST00000588815 EVC2Q86UK5 1308 aa42.89■■■■■ 4.46
CAPNS1-206ENST00000588815 PTPRUQ92729 1446 aa42.88■■■■■ 4.45
CAPNS1-206ENST00000588815 TULP4Q9NRJ4 1543 aa42.88■■■■■ 4.45
CAPNS1-206ENST00000588815 PTCH1Q13635 1447 aa42.87■■■■■ 4.45
CAPNS1-206ENST00000588815 AMOTL2Q9Y2J4 779 aa42.8■■■■■ 4.44
CAPNS1-206ENST00000588815 NCKAP5LQ9HCH0 1330 aa42.8■■■■■ 4.44
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms