RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 COL17A1Q9UMD9 1497 aaPredicted RBP19.55■□□□□ 0.72
LIG3-205ENST00000585941 SYNMO15061 1565 aa19.55■□□□□ 0.72
LIG3-205ENST00000585941 EIF3AQ14152 1382 aaKnown RBP19.54■□□□□ 0.72
LIG3-205ENST00000585941 PREX1Q8TCU6 1659 aa19.53■□□□□ 0.72
LIG3-205ENST00000585941 SCAF1Q9H7N4 1312 aaKnown RBP19.53■□□□□ 0.72
LIG3-205ENST00000585941 SLC24A1O60721 1099 aa19.52■□□□□ 0.72
LIG3-205ENST00000585941 POLR3GLQ9BT43 218 aa19.52■□□□□ 0.72
LIG3-205ENST00000585941 SLC52A1Q9NWF4 448 aa19.52■□□□□ 0.72
LIG3-205ENST00000585941 TMF1P82094 1093 aa19.52■□□□□ 0.71
LIG3-205ENST00000585941 TESK2Q96S53 571 aa19.52■□□□□ 0.71
LIG3-205ENST00000585941 SETBP1Q9Y6X0 1596 aa19.5■□□□□ 0.71
LIG3-205ENST00000585941 KTN1Q86UP2 1357 aaKnown RBP19.5■□□□□ 0.71
LIG3-205ENST00000585941 CHGAP10645 457 aaKnown RBP19.49■□□□□ 0.71
LIG3-205ENST00000585941 ADGRF5Q8IZF2 1346 aa19.48■□□□□ 0.71
LIG3-205ENST00000585941 CDCA8Q53HL2 280 aa19.47■□□□□ 0.71
LIG3-205ENST00000585941 PIK3C2GO75747 1445 aa19.46■□□□□ 0.71
LIG3-205ENST00000585941 DISP3Q9P2K9 1392 aa19.45■□□□□ 0.7
LIG3-205ENST00000585941 CLTCQ00610 1675 aaKnown RBP19.45■□□□□ 0.7
LIG3-205ENST00000585941 ERVK-7P63135 1459 aa19.44■□□□□ 0.7
LIG3-205ENST00000585941 VGFO15240 615 aaPredicted RBP19.44■□□□□ 0.7
LIG3-205ENST00000585941 GTF3C3Q9Y5Q9 886 aa19.44■□□□□ 0.7
LIG3-205ENST00000585941 ZFYVE9O95405 1425 aa19.44■□□□□ 0.7
LIG3-205ENST00000585941 NEXMIFQ5QGS0 1516 aa19.44■□□□□ 0.7
LIG3-205ENST00000585941 CFAP70Q5T0N1 1121 aa19.43■□□□□ 0.7
LIG3-205ENST00000585941 IDI1Q13907 227 aa19.43■□□□□ 0.7
LIG3-205ENST00000585941 MYO3AQ8NEV4 1616 aa19.42■□□□□ 0.7
LIG3-205ENST00000585941 C14orf93Q9H972 538 aaKnown RBP19.42■□□□□ 0.7
LIG3-205ENST00000585941 TMEM131LA2VDJ0 1609 aa19.42■□□□□ 0.7
LIG3-205ENST00000585941 SPATA31D1Q6ZQQ2 1576 aa19.4■□□□□ 0.7
LIG3-205ENST00000585941 RALBP1Q15311 655 aa19.4■□□□□ 0.7
LIG3-205ENST00000585941 MRS2Q9HD23 443 aa19.4■□□□□ 0.7
LIG3-205ENST00000585941 SBNO2Q9Y2G9 1366 aa19.39■□□□□ 0.69
LIG3-205ENST00000585941 MYO5BQ9ULV0 1848 aa19.38■□□□□ 0.69
LIG3-205ENST00000585941 ADGRB1O14514 1584 aa19.37■□□□□ 0.69
LIG3-205ENST00000585941 KDM5AP29375 1690 aaKnown RBP19.36■□□□□ 0.69
LIG3-205ENST00000585941 ESF1Q9H501 851 aaKnown RBP19.36■□□□□ 0.69
LIG3-205ENST00000585941 PER1O15534 1290 aaPredicted RBP19.33■□□□□ 0.69
LIG3-205ENST00000585941 FBXO31Q5XUX0 539 aaPredicted RBP19.33■□□□□ 0.69
LIG3-205ENST00000585941 MYBBP1AQ9BQG0 1328 aaKnown RBP19.32■□□□□ 0.68
LIG3-205ENST00000585941 CCDC184Q52MB2 194 aa19.32■□□□□ 0.68
LIG3-205ENST00000585941 CENPJQ9HC77 1338 aaPredicted RBP19.32■□□□□ 0.68
LIG3-205ENST00000585941 BRD4O60885 1362 aaPredicted RBP19.31■□□□□ 0.68
LIG3-205ENST00000585941 PARD3Q8TEW0 1356 aa19.3■□□□□ 0.68
LIG3-205ENST00000585941 MLECQ14165 292 aa19.3■□□□□ 0.68
LIG3-205ENST00000585941 PANK3Q9H999 370 aa19.3■□□□□ 0.68
LIG3-205ENST00000585941 STAG3Q9UJ98 1225 aa19.3■□□□□ 0.68
LIG3-205ENST00000585941 ZMYM3Q14202 1370 aa19.29■□□□□ 0.68
LIG3-205ENST00000585941 QRICH2Q9H0J4 1663 aa19.29■□□□□ 0.68
LIG3-205ENST00000585941 HNRNPUQ00839 825 aaKnown RBP eCLIP19.29■□□□□ 0.68
LIG3-205ENST00000585941 MYOM1P52179 1685 aa19.28■□□□□ 0.68
LIG3-205ENST00000585941 TMC1Q8TDI8 760 aa19.27■□□□□ 0.68
LIG3-205ENST00000585941 FAM9BQ8IZU0 186 aa19.27■□□□□ 0.67
LIG3-205ENST00000585941 A2ML1A8K2U0 1454 aa19.27■□□□□ 0.67
LIG3-205ENST00000585941 ARHGEF28Q8N1W1 1705 aaKnown RBP19.26■□□□□ 0.67
LIG3-205ENST00000585941 NLRP13Q86W25 1043 aa19.25■□□□□ 0.67
LIG3-205ENST00000585941 TRAK1Q9UPV9 953 aa19.25■□□□□ 0.67
LIG3-205ENST00000585941 KNSTRNQ9Y448 316 aa19.24■□□□□ 0.67
LIG3-205ENST00000585941 PUS7Q96PZ0 661 aaKnown RBP19.24■□□□□ 0.67
LIG3-205ENST00000585941 NPC1L1Q9UHC9 1359 aa19.23■□□□□ 0.67
LIG3-205ENST00000585941 TMEM132EQ6IEE7 984 aa19.23■□□□□ 0.67
LIG3-205ENST00000585941 CNGB1Q14028 1251 aaPredicted RBP19.22■□□□□ 0.67
LIG3-205ENST00000585941 NUTM2DQ5VT03 806 aaPredicted RBP19.22■□□□□ 0.67
LIG3-205ENST00000585941 ASXL1Q8IXJ9 1541 aa19.21■□□□□ 0.67
LIG3-205ENST00000585941 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.21■□□□□ 0.67
LIG3-205ENST00000585941 RIMS2Q9UQ26 1411 aa19.21■□□□□ 0.67
LIG3-205ENST00000585941 TNRQ92752 1358 aa19.21■□□□□ 0.67
LIG3-205ENST00000585941 ZBED9Q6R2W3 1325 aa19.21■□□□□ 0.67
LIG3-205ENST00000585941 TRHP20396 242 aaPredicted RBP19.2■□□□□ 0.66
LIG3-205ENST00000585941 PNISRQ8TF01 805 aaKnown RBP19.2■□□□□ 0.66
LIG3-205ENST00000585941 ALKQ9UM73 1620 aa19.2■□□□□ 0.66
LIG3-205ENST00000585941 HDGFP51858 240 aaKnown RBP19.2■□□□□ 0.66
LIG3-205ENST00000585941 EVC2Q86UK5 1308 aa19.18■□□□□ 0.66
LIG3-205ENST00000585941 LRPPRCP42704 1394 aaKnown RBP19.17■□□□□ 0.66
LIG3-205ENST00000585941 CC2D1BQ5T0F9 858 aaKnown RBP19.17■□□□□ 0.66
LIG3-205ENST00000585941 YTHDC2Q9H6S0 1430 aaKnown RBP19.17■□□□□ 0.66
LIG3-205ENST00000585941 AMER1Q5JTC6 1135 aaPredicted RBP19.16■□□□□ 0.66
LIG3-205ENST00000585941 INSRP06213 1382 aa19.15■□□□□ 0.66
LIG3-205ENST00000585941 NLRP1Q9C000 1473 aa19.15■□□□□ 0.66
LIG3-205ENST00000585941 UBR1Q8IWV7 1749 aa19.13■□□□□ 0.65
LIG3-205ENST00000585941 PTPRMP28827 1452 aa19.13■□□□□ 0.65
LIG3-205ENST00000585941 DLC1Q96QB1 1528 aa19.13■□□□□ 0.65
LIG3-205ENST00000585941 FER1L4A9Z1Z3 1794 aa19.13■□□□□ 0.65
LIG3-205ENST00000585941 SETD1AO15047 1707 aaKnown RBP19.12■□□□□ 0.65
LIG3-205ENST00000585941 NINLQ9Y2I6 1382 aa19.11■□□□□ 0.65
LIG3-205ENST00000585941 TULP4Q9NRJ4 1543 aa19.11■□□□□ 0.65
LIG3-205ENST00000585941 C3P01024 1663 aa19.1■□□□□ 0.65
LIG3-205ENST00000585941 USP32Q8NFA0 1604 aa19.09■□□□□ 0.65
LIG3-205ENST00000585941 STK26Q9P289 416 aa19.09■□□□□ 0.65
LIG3-205ENST00000585941 NEFLP07196 543 aa19.08■□□□□ 0.65
LIG3-205ENST00000585941 TMEM2Q9UHN6 1383 aa19.08■□□□□ 0.64
LIG3-205ENST00000585941 NRXN3Q9Y4C0 1643 aa19.08■□□□□ 0.64
LIG3-205ENST00000585941 POGKQ9P215 609 aa19.08■□□□□ 0.64
LIG3-205ENST00000585941 ABCC11Q96J66 1382 aa19.06■□□□□ 0.64
LIG3-205ENST00000585941 PPP2R1AP30153 589 aa19.06■□□□□ 0.64
LIG3-205ENST00000585941 ATAD2Q6PL18 1390 aa19.06■□□□□ 0.64
LIG3-205ENST00000585941 PRAM1Q96QH2 718 aa19.05■□□□□ 0.64
LIG3-205ENST00000585941 CARD14Q9BXL6 1004 aa19.05■□□□□ 0.64
LIG3-205ENST00000585941 SUPT16HQ9Y5B9 1047 aaKnown RBP19.05■□□□□ 0.64
LIG3-205ENST00000585941 KNDC1Q76NI1 1749 aa19.04■□□□□ 0.64
LIG3-205ENST00000585941 ANKRD36BQ8N2N9 1353 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms