RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 ARHGAP23Q9P227 1491 aa14.82□□□□□ -0.04
LIG3-203ENST00000585370 KANK1Q14678 1352 aa14.82□□□□□ -0.04
LIG3-203ENST00000585370 SLIT1O75093 1534 aa14.82□□□□□ -0.04
LIG3-203ENST00000585370 LRRC7Q96NW7 1537 aa14.82□□□□□ -0.04
LIG3-203ENST00000585370 IDI1Q13907 227 aa14.81□□□□□ -0.04
LIG3-203ENST00000585370 DIEXFQ68CQ4 756 aaKnown RBP14.81□□□□□ -0.04
LIG3-203ENST00000585370 UNC13BO14795 1591 aa14.81□□□□□ -0.04
LIG3-203ENST00000585370 FOXD1Q16676 465 aa14.8□□□□□ -0.04
LIG3-203ENST00000585370 EID1Q9Y6B2 187 aa14.8□□□□□ -0.04
LIG3-203ENST00000585370 LMTK2Q8IWU2 1503 aa14.79□□□□□ -0.04
LIG3-203ENST00000585370 TMEM2Q9UHN6 1383 aa14.79□□□□□ -0.04
LIG3-203ENST00000585370 STAG3Q9UJ98 1225 aa14.78□□□□□ -0.04
LIG3-203ENST00000585370 PIK3C2BO00750 1634 aa14.77□□□□□ -0.04
LIG3-203ENST00000585370 L3MBTL2Q969R5 705 aa14.76□□□□□ -0.05
LIG3-203ENST00000585370 IQGAP3Q86VI3 1631 aa14.76□□□□□ -0.05
LIG3-203ENST00000585370 NOS1P29475 1434 aa14.75□□□□□ -0.05
LIG3-203ENST00000585370 SYNMO15061 1565 aa14.74□□□□□ -0.05
LIG3-203ENST00000585370 SENP3Q9H4L4 574 aaPredicted RBP14.74□□□□□ -0.05
LIG3-203ENST00000585370 EFCAB6Q5THR3 1501 aa14.73□□□□□ -0.05
LIG3-203ENST00000585370 SLC52A1Q9NWF4 448 aa14.73□□□□□ -0.05
LIG3-203ENST00000585370 MED1Q15648 1581 aaPredicted RBP14.73□□□□□ -0.05
LIG3-203ENST00000585370 SLC26A8Q96RN1 970 aa14.72□□□□□ -0.05
LIG3-203ENST00000585370 KDM5AP29375 1690 aaKnown RBP14.71□□□□□ -0.05
LIG3-203ENST00000585370 TET3O43151 1660 aa14.71□□□□□ -0.06
LIG3-203ENST00000585370 XIRP1Q702N8 1843 aaKnown RBP14.71□□□□□ -0.06
LIG3-203ENST00000585370 KCNA6P17658 529 aa14.7□□□□□ -0.06
LIG3-203ENST00000585370 CCDC144AA2RUR9 1427 aa14.68□□□□□ -0.06
LIG3-203ENST00000585370 RBM33Q96EV2 1170 aaKnown RBP14.68□□□□□ -0.06
LIG3-203ENST00000585370 TMEM94Q12767 1356 aa14.68□□□□□ -0.06
LIG3-203ENST00000585370 ADGRB3O60242 1522 aa14.67□□□□□ -0.06
LIG3-203ENST00000585370 STAC3Q96MF2 364 aa14.67□□□□□ -0.06
LIG3-203ENST00000585370 PROSER2Q86WR7 435 aaPredicted RBP14.66□□□□□ -0.06
LIG3-203ENST00000585370 EIF4G2P78344 907 aaKnown RBP eCLIP14.65□□□□□ -0.06
LIG3-203ENST00000585370 BCANQ96GW7 911 aa14.65□□□□□ -0.06
LIG3-203ENST00000585370 PHF23Q9BUL5 403 aaPredicted RBP14.65□□□□□ -0.06
LIG3-203ENST00000585370 FAM135BQ49AJ0 1406 aa14.65□□□□□ -0.06
LIG3-203ENST00000585370 ZFYVE9O95405 1425 aa14.64□□□□□ -0.07
LIG3-203ENST00000585370 HDGFP51858 240 aaKnown RBP14.62□□□□□ -0.07
LIG3-203ENST00000585370 NBPF8Q3BBV2 869 aa14.62□□□□□ -0.07
LIG3-203ENST00000585370 RIMS2Q9UQ26 1411 aa14.62□□□□□ -0.07
LIG3-203ENST00000585370 TMEM131LA2VDJ0 1609 aa14.62□□□□□ -0.07
LIG3-203ENST00000585370 MYO5BQ9ULV0 1848 aa14.62□□□□□ -0.07
LIG3-203ENST00000585370 PLEKHG1Q9ULL1 1385 aa14.61□□□□□ -0.07
LIG3-203ENST00000585370 CHGAP10645 457 aaKnown RBP14.61□□□□□ -0.07
LIG3-203ENST00000585370 RGS17Q9UGC6 210 aaPredicted RBP14.61□□□□□ -0.07
LIG3-203ENST00000585370 NUTM2DQ5VT03 806 aaPredicted RBP14.6□□□□□ -0.07
LIG3-203ENST00000585370 NWD1Q149M9 1564 aa14.6□□□□□ -0.07
LIG3-203ENST00000585370 NKTRP30414 1462 aaKnown RBP14.59□□□□□ -0.07
LIG3-203ENST00000585370 DCAF11Q8TEB1 546 aa14.59□□□□□ -0.07
LIG3-203ENST00000585370 TBX22Q9Y458 520 aa14.59□□□□□ -0.07
LIG3-203ENST00000585370 E9PCH4 1651 aa14.58□□□□□ -0.07
LIG3-203ENST00000585370 HSPA5P11021 654 aaKnown RBP14.58□□□□□ -0.08
LIG3-203ENST00000585370 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.58□□□□□ -0.08
LIG3-203ENST00000585370 SLAIN2Q9P270 581 aa14.58□□□□□ -0.08
LIG3-203ENST00000585370 TRPM2O94759 1503 aa14.57□□□□□ -0.08
LIG3-203ENST00000585370 MSH6P52701 1360 aa14.57□□□□□ -0.08
LIG3-203ENST00000585370 CHD2O14647 1828 aaKnown RBP14.57□□□□□ -0.08
LIG3-203ENST00000585370 ROBO1Q9Y6N7 1651 aa14.56□□□□□ -0.08
LIG3-203ENST00000585370 ADAMTS13Q76LX8 1427 aa14.56□□□□□ -0.08
LIG3-203ENST00000585370 RGL3Q3MIN7 710 aa14.54□□□□□ -0.08
LIG3-203ENST00000585370 KDM2AQ9Y2K7 1162 aa14.54□□□□□ -0.08
LIG3-203ENST00000585370 RALGAPBQ86X10 1494 aa14.54□□□□□ -0.08
LIG3-203ENST00000585370 SPATA31E1Q6ZUB1 1445 aa14.53□□□□□ -0.08
LIG3-203ENST00000585370 SPHKAPQ2M3C7 1700 aa14.52□□□□□ -0.08
LIG3-203ENST00000585370 ZNF326Q5BKZ1 582 aaKnown RBP14.52□□□□□ -0.09
LIG3-203ENST00000585370 MIER1Q8N108 512 aa14.52□□□□□ -0.09
LIG3-203ENST00000585370 NCOA3Q9Y6Q9 1424 aa14.51□□□□□ -0.09
LIG3-203ENST00000585370 PRAG1Q86YV5 1406 aa14.5□□□□□ -0.09
LIG3-203ENST00000585370 PIK3R4Q99570 1358 aa14.5□□□□□ -0.09
LIG3-203ENST00000585370 DDX10Q13206 875 aaKnown RBP14.5□□□□□ -0.09
LIG3-203ENST00000585370 POTEAQ6S8J7 498 aa14.5□□□□□ -0.09
LIG3-203ENST00000585370 HIRIP3Q9BW71 556 aaPredicted RBP14.5□□□□□ -0.09
LIG3-203ENST00000585370 CARD11Q9BXL7 1154 aa14.5□□□□□ -0.09
LIG3-203ENST00000585370 AMOTL2Q9Y2J4 779 aa14.5□□□□□ -0.09
LIG3-203ENST00000585370 C14orf37Q86TY3 774 aa14.49□□□□□ -0.09
LIG3-203ENST00000585370 C19orf44Q9H6X5 657 aa14.49□□□□□ -0.09
LIG3-203ENST00000585370 PTPRUQ92729 1446 aa14.49□□□□□ -0.09
LIG3-203ENST00000585370 GPRASP1Q5JY77 1395 aa14.47□□□□□ -0.09
LIG3-203ENST00000585370 USP47Q96K76 1375 aa14.47□□□□□ -0.09
LIG3-203ENST00000585370 DIP2AQ14689 1571 aa14.47□□□□□ -0.09
LIG3-203ENST00000585370 RPGRIP1LQ68CZ1 1315 aa14.47□□□□□ -0.09
LIG3-203ENST00000585370 CADPS2Q86UW7 1296 aa14.47□□□□□ -0.09
LIG3-203ENST00000585370 ROCK2O75116 1388 aaKnown RBP14.47□□□□□ -0.09
LIG3-203ENST00000585370 CLTCL1P53675 1640 aa14.46□□□□□ -0.09
LIG3-203ENST00000585370 ATF3P18847 181 aa14.46□□□□□ -0.09
LIG3-203ENST00000585370 PHLPP1O60346 1717 aa14.46□□□□□ -0.1
LIG3-203ENST00000585370 JCADQ9P266 1359 aa14.46□□□□□ -0.1
LIG3-203ENST00000585370 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.45□□□□□ -0.1
LIG3-203ENST00000585370 NRXN3Q9Y4C0 1643 aa14.44□□□□□ -0.1
LIG3-203ENST00000585370 WASHC2AQ641Q2 1341 aa14.43□□□□□ -0.1
LIG3-203ENST00000585370 LAMC1P11047 1609 aa14.43□□□□□ -0.1
LIG3-203ENST00000585370 COL16A1Q07092 1604 aaPredicted RBP14.43□□□□□ -0.1
LIG3-203ENST00000585370 METP08581 1390 aa14.43□□□□□ -0.1
LIG3-203ENST00000585370 CCDC7Q96M83 1385 aa14.43□□□□□ -0.1
LIG3-203ENST00000585370 ANP32CO43423 234 aa14.42□□□□□ -0.1
LIG3-203ENST00000585370 BRINP3Q76B58 766 aa14.42□□□□□ -0.1
LIG3-203ENST00000585370 KIF1BO60333 1816 aa14.42□□□□□ -0.1
LIG3-203ENST00000585370 SETBP1Q9Y6X0 1596 aa14.42□□□□□ -0.1
LIG3-203ENST00000585370 TRPM1Q7Z4N2 1603 aa14.41□□□□□ -0.1
LIG3-203ENST00000585370 SLC24A1O60721 1099 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms