RNA–Protein interactions for RNA: ENST00000583294.1

SMARCE1-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 476 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-219ENST00000583294 TTLL12Q14166 644 aaPredicted RBP11.94□□□□□ -0.5
SMARCE1-219ENST00000583294 SAMD7Q7Z3H4 446 aa11.94□□□□□ -0.5
SMARCE1-219ENST00000583294 TSR3Q9UJK0 312 aaKnown RBP11.94□□□□□ -0.5
SMARCE1-219ENST00000583294 TTC13Q8NBP0 860 aa11.93□□□□□ -0.5
SMARCE1-219ENST00000583294 RBM27Q9P2N5 1060 aaKnown RBP11.93□□□□□ -0.5
SMARCE1-219ENST00000583294 IFFO2Q5TF58 517 aa11.92□□□□□ -0.5
SMARCE1-219ENST00000583294 PARP9Q8IXQ6 854 aa11.92□□□□□ -0.5
SMARCE1-219ENST00000583294 PHOX2BQ99453 314 aa11.92□□□□□ -0.5
SMARCE1-219ENST00000583294 ADGRG1Q9Y653 693 aa11.92□□□□□ -0.5
SMARCE1-219ENST00000583294 NYAP1Q6ZVC0 841 aa11.91□□□□□ -0.5
SMARCE1-219ENST00000583294 IL27Q8NEV9 243 aa11.91□□□□□ -0.5
SMARCE1-219ENST00000583294 OATP04181 439 aa11.9□□□□□ -0.5
SMARCE1-219ENST00000583294 PPP4CP60510 307 aa11.9□□□□□ -0.5
SMARCE1-219ENST00000583294 NLRP7Q8WX94 980 aa11.9□□□□□ -0.5
SMARCE1-219ENST00000583294 MDM2Q00987 491 aaPredicted RBP11.89□□□□□ -0.51
SMARCE1-219ENST00000583294 METTL3Q86U44 580 aaKnown RBP11.89□□□□□ -0.51
SMARCE1-219ENST00000583294 REPIN1Q9BWE0 567 aaKnown RBP11.88□□□□□ -0.51
SMARCE1-219ENST00000583294 ITGBL1O95965 494 aaPredicted RBP11.87□□□□□ -0.51
SMARCE1-219ENST00000583294 PXYLP1Q8TE99 480 aa11.87□□□□□ -0.51
SMARCE1-219ENST00000583294 A0A0G2JS52 829 aa11.86□□□□□ -0.51
SMARCE1-219ENST00000583294 GIGYF2Q6Y7W6 1299 aaKnown RBP11.86□□□□□ -0.51
SMARCE1-219ENST00000583294 RBM46Q8TBY0 533 aaKnown RBP11.86□□□□□ -0.51
SMARCE1-219ENST00000583294 FAM117AQ9C073 453 aa11.86□□□□□ -0.51
SMARCE1-219ENST00000583294 CLCN1P35523 988 aa11.84□□□□□ -0.51
SMARCE1-219ENST00000583294 HDGFP51858 240 aaKnown RBP11.84□□□□□ -0.51
SMARCE1-219ENST00000583294 EYA1Q99502 592 aa11.84□□□□□ -0.51
SMARCE1-219ENST00000583294 RNF40O75150 1001 aa11.83□□□□□ -0.52
SMARCE1-219ENST00000583294 KCNC4Q03721 635 aa11.83□□□□□ -0.52
SMARCE1-219ENST00000583294 GPCPD1Q9NPB8 672 aa11.83□□□□□ -0.52
SMARCE1-219ENST00000583294 SWT1Q5T5J6 900 aaKnown RBP11.82□□□□□ -0.52
SMARCE1-219ENST00000583294 MS4A1P11836 297 aa11.81□□□□□ -0.52
SMARCE1-219ENST00000583294 TMUB1Q9BVT8 246 aa11.81□□□□□ -0.52
SMARCE1-219ENST00000583294 GTF3C3Q9Y5Q9 886 aa11.8□□□□□ -0.52
SMARCE1-219ENST00000583294 RCCD1A6NED2 376 aa11.79□□□□□ -0.52
SMARCE1-219ENST00000583294 PLEKHG3A1L390 1219 aa11.78□□□□□ -0.52
SMARCE1-219ENST00000583294 SSTR3P32745 418 aaPredicted RBP11.78□□□□□ -0.52
SMARCE1-219ENST00000583294 DDRGK1Q96HY6 314 aa11.78□□□□□ -0.52
SMARCE1-219ENST00000583294 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.76□□□□□ -0.53
SMARCE1-219ENST00000583294 APLP1P51693 650 aa11.76□□□□□ -0.53
SMARCE1-219ENST00000583294 TJAP1Q5JTD0 557 aa11.76□□□□□ -0.53
SMARCE1-219ENST00000583294 DAXXQ9UER7 740 aaPredicted RBP11.76□□□□□ -0.53
SMARCE1-219ENST00000583294 FAM217BQ9NTX9 383 aaPredicted RBP11.75□□□□□ -0.53
SMARCE1-219ENST00000583294 RGS20O76081 388 aa11.74□□□□□ -0.53
SMARCE1-219ENST00000583294 SLF2Q8IX21 1173 aa11.74□□□□□ -0.53
SMARCE1-219ENST00000583294 DNAJB2P25686 324 aa11.73□□□□□ -0.53
SMARCE1-219ENST00000583294 MTRQ99707 1265 aa11.73□□□□□ -0.53
SMARCE1-219ENST00000583294 ZNF516Q92618 1163 aa11.71□□□□□ -0.53
SMARCE1-219ENST00000583294 BEGAINQ9BUH8 593 aa11.71□□□□□ -0.53
SMARCE1-219ENST00000583294 TMEM134Q9H6X4 195 aa11.69□□□□□ -0.54
SMARCE1-219ENST00000583294 IL21Q9HBE4 155 aa11.69□□□□□ -0.54
SMARCE1-219ENST00000583294 DDX11L8A8MPP1 907 aa11.68□□□□□ -0.54
SMARCE1-219ENST00000583294 SLC4A3P48751 1232 aa11.67□□□□□ -0.54
SMARCE1-219ENST00000583294 COPS2P61201 443 aa11.66□□□□□ -0.54
SMARCE1-219ENST00000583294 NECTIN2Q92692 538 aa11.66□□□□□ -0.54
SMARCE1-219ENST00000583294 NKX2-3Q8TAU0 364 aa11.64□□□□□ -0.55
SMARCE1-219ENST00000583294 SULF1Q8IWU6 871 aa11.63□□□□□ -0.55
SMARCE1-219ENST00000583294 RDH13Q8NBN7 331 aa11.63□□□□□ -0.55
SMARCE1-219ENST00000583294 ATP1B4Q9UN42 357 aaPredicted RBP11.62□□□□□ -0.55
SMARCE1-219ENST00000583294 CD46P15529 392 aa11.61□□□□□ -0.55
SMARCE1-219ENST00000583294 PPP1R18Q6NYC8 613 aa11.61□□□□□ -0.55
SMARCE1-219ENST00000583294 IRX2Q9BZI1 471 aaPredicted RBP11.61□□□□□ -0.55
SMARCE1-219ENST00000583294 SLC10A3P09131 477 aa11.6□□□□□ -0.55
SMARCE1-219ENST00000583294 RSPH6AQ9H0K4 717 aa11.6□□□□□ -0.55
SMARCE1-219ENST00000583294 POLR3EQ9NVU0 708 aa11.6□□□□□ -0.55
SMARCE1-219ENST00000583294 SH3D19Q5HYK7 790 aa11.59□□□□□ -0.55
SMARCE1-219ENST00000583294 PCMTD1Q96MG8 357 aaPredicted RBP11.59□□□□□ -0.55
SMARCE1-219ENST00000583294 TBC1D2Q9BYX2 928 aa11.59□□□□□ -0.55
SMARCE1-219ENST00000583294 PCDHB3Q9Y5E6 796 aa11.59□□□□□ -0.55
SMARCE1-219ENST00000583294 PRR14Q9BWN1 585 aa11.58□□□□□ -0.56
SMARCE1-219ENST00000583294 GOPCQ9HD26 462 aa11.58□□□□□ -0.56
SMARCE1-219ENST00000583294 ZPR1O75312 459 aa11.57□□□□□ -0.56
SMARCE1-219ENST00000583294 MYSM1Q5VVJ2 828 aa11.57□□□□□ -0.56
SMARCE1-219ENST00000583294 BLOC1S3Q6QNY0 202 aa11.57□□□□□ -0.56
SMARCE1-219ENST00000583294 NUTM1Q86Y26 1132 aa11.57□□□□□ -0.56
SMARCE1-219ENST00000583294 SPIRE2Q8WWL2 714 aa11.57□□□□□ -0.56
SMARCE1-219ENST00000583294 CFHP08603 1231 aa11.56□□□□□ -0.56
SMARCE1-219ENST00000583294 SKIV2LQ15477 1246 aaKnown RBP11.56□□□□□ -0.56
SMARCE1-219ENST00000583294 PROCA1Q8NCQ7 364 aaPredicted RBP11.56□□□□□ -0.56
SMARCE1-219ENST00000583294 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.56□□□□□ -0.56
SMARCE1-219ENST00000583294 TIMELESSQ9UNS1 1208 aa11.56□□□□□ -0.56
SMARCE1-219ENST00000583294 KMT5BQ4FZB7 885 aa11.55□□□□□ -0.56
SMARCE1-219ENST00000583294 RSPH4AQ5TD94 716 aa11.55□□□□□ -0.56
SMARCE1-219ENST00000583294 ACTN4O43707 911 aaKnown RBP11.54□□□□□ -0.56
SMARCE1-219ENST00000583294 DIXDC1Q155Q3 683 aa11.53□□□□□ -0.56
SMARCE1-219ENST00000583294 GCGRP47871 477 aa11.52□□□□□ -0.57
SMARCE1-219ENST00000583294 PRKD2Q9BZL6 878 aa11.52□□□□□ -0.57
SMARCE1-219ENST00000583294 CLK2P49760 499 aaKnown RBP11.51□□□□□ -0.57
SMARCE1-219ENST00000583294 C14orf37Q86TY3 774 aa11.51□□□□□ -0.57
SMARCE1-219ENST00000583294 KDM4AO75164 1064 aa11.5□□□□□ -0.57
SMARCE1-219ENST00000583294 NDUFV2P19404 249 aa11.5□□□□□ -0.57
SMARCE1-219ENST00000583294 RIC3Q7Z5B4 369 aa11.5□□□□□ -0.57
SMARCE1-219ENST00000583294 LIMD1Q9UGP4 676 aa11.5□□□□□ -0.57
SMARCE1-219ENST00000583294 MOXD2PA6NHM9 499 aa11.49□□□□□ -0.57
SMARCE1-219ENST00000583294 TLL1O43897 1013 aa11.49□□□□□ -0.57
SMARCE1-219ENST00000583294 CSPP1Q1MSJ5 1256 aa11.47□□□□□ -0.57
SMARCE1-219ENST00000583294 PUS10Q3MIT2 529 aaKnown RBP11.47□□□□□ -0.57
SMARCE1-219ENST00000583294 GGCXP38435 758 aa11.46□□□□□ -0.57
SMARCE1-219ENST00000583294 RSBN1LQ6PCB5 846 aaPredicted RBP11.46□□□□□ -0.57
SMARCE1-219ENST00000583294 SPTLC1O15269 473 aa11.45□□□□□ -0.58
SMARCE1-219ENST00000583294 USP46P62068 366 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms