RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 FBXW7Q969H0 707 aa9.5□□□□□ -0.89
PTPRM-213ENST00000580949 HS3ST6Q96QI5 342 aa9.5□□□□□ -0.89
PTPRM-213ENST00000580949 PRG4Q92954 1404 aaPredicted RBP9.49□□□□□ -0.89
PTPRM-213ENST00000580949 CHD1O14646 1710 aa9.49□□□□□ -0.89
PTPRM-213ENST00000580949 CARMIL2Q6F5E8 1435 aa9.48□□□□□ -0.89
PTPRM-213ENST00000580949 ARID3CA6NKF2 412 aa9.48□□□□□ -0.89
PTPRM-213ENST00000580949 ZDHHC16Q969W1 377 aa9.48□□□□□ -0.89
PTPRM-213ENST00000580949 POTEB3A0JP26 581 aa9.47□□□□□ -0.89
PTPRM-213ENST00000580949 OSBPP22059 807 aa9.47□□□□□ -0.89
PTPRM-213ENST00000580949 POTEBQ6S5H4 581 aa9.47□□□□□ -0.89
PTPRM-213ENST00000580949 POTEGQ6S5H5 508 aa9.47□□□□□ -0.89
PTPRM-213ENST00000580949 PHLDB1Q86UU1 1377 aa9.47□□□□□ -0.89
PTPRM-213ENST00000580949 POTEMA6NI47 508 aa9.46□□□□□ -0.9
PTPRM-213ENST00000580949 TULP1O00294 542 aaPredicted RBP9.46□□□□□ -0.9
PTPRM-213ENST00000580949 ZNF687Q8N1G0 1237 aa9.46□□□□□ -0.9
PTPRM-213ENST00000580949 CFAP43Q8NDM7 1665 aa9.45□□□□□ -0.9
PTPRM-213ENST00000580949 HRCP23327 699 aa9.45□□□□□ -0.9
PTPRM-213ENST00000580949 BCL2L12Q9HB09 334 aa9.45□□□□□ -0.9
PTPRM-213ENST00000580949 RRBP1Q9P2E9 1410 aaKnown RBP9.45□□□□□ -0.9
PTPRM-213ENST00000580949 NUP153P49790 1475 aaKnown RBP9.45□□□□□ -0.9
PTPRM-213ENST00000580949 PLB1Q6P1J6 1458 aa9.45□□□□□ -0.9
PTPRM-213ENST00000580949 EPRSP07814 1512 aaKnown RBP9.45□□□□□ -0.9
PTPRM-213ENST00000580949 EN1Q05925 392 aaPredicted RBP9.44□□□□□ -0.9
PTPRM-213ENST00000580949 ADAM33Q9BZ11 813 aa9.44□□□□□ -0.9
PTPRM-213ENST00000580949 MTUS2Q5JR59 1369 aa9.44□□□□□ -0.9
PTPRM-213ENST00000580949 PTPRGP23470 1445 aa9.44□□□□□ -0.9
PTPRM-213ENST00000580949 MAGI3Q5TCQ9 1506 aa9.44□□□□□ -0.9
PTPRM-213ENST00000580949 CLASP1Q7Z460 1538 aa9.44□□□□□ -0.9
PTPRM-213ENST00000580949 LRRIQ1Q96JM4 1722 aa9.44□□□□□ -0.9
PTPRM-213ENST00000580949 SHROOM2Q13796 1616 aa9.43□□□□□ -0.9
PTPRM-213ENST00000580949 ERCC6L2Q5T890 1561 aa9.43□□□□□ -0.9
PTPRM-213ENST00000580949 CDK13Q14004 1512 aaKnown RBP9.43□□□□□ -0.9
PTPRM-213ENST00000580949 CCDC18Q5T9S5 1454 aa9.42□□□□□ -0.9
PTPRM-213ENST00000580949 CCNB3Q8WWL7 1395 aa9.42□□□□□ -0.9
PTPRM-213ENST00000580949 PBX2P40425 430 aa9.42□□□□□ -0.9
PTPRM-213ENST00000580949 PRIM1P49642 420 aaKnown RBP9.42□□□□□ -0.9
PTPRM-213ENST00000580949 HECW1Q76N89 1606 aa9.42□□□□□ -0.9
PTPRM-213ENST00000580949 MAP3K7O43318 606 aa9.41□□□□□ -0.9
PTPRM-213ENST00000580949 RBM33Q96EV2 1170 aaKnown RBP9.41□□□□□ -0.9
PTPRM-213ENST00000580949 RAPGEF6Q8TEU7 1601 aa9.41□□□□□ -0.9
PTPRM-213ENST00000580949 ABCA8O94911 1581 aa9.41□□□□□ -0.9
PTPRM-213ENST00000580949 PTPREP23469 700 aa9.4□□□□□ -0.9
PTPRM-213ENST00000580949 C6orf132Q5T0Z8 1188 aa9.4□□□□□ -0.9
PTPRM-213ENST00000580949 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.4□□□□□ -0.9
PTPRM-213ENST00000580949 NCOA2Q15596 1464 aa9.4□□□□□ -0.91
PTPRM-213ENST00000580949 ARHGAP33O14559 1287 aa9.39□□□□□ -0.91
PTPRM-213ENST00000580949 ATP10BO94823 1461 aa9.39□□□□□ -0.91
PTPRM-213ENST00000580949 ARHGEF11O15085 1522 aa9.38□□□□□ -0.91
PTPRM-213ENST00000580949 FAM50AQ14320 339 aaKnown RBP9.38□□□□□ -0.91
PTPRM-213ENST00000580949 RBM26Q5T8P6 1007 aaKnown RBP9.38□□□□□ -0.91
PTPRM-213ENST00000580949 POTEEQ6S8J3 1075 aa9.38□□□□□ -0.91
PTPRM-213ENST00000580949 KCNH8Q96L42 1107 aa9.38□□□□□ -0.91
PTPRM-213ENST00000580949 EHBP1L1Q8N3D4 1523 aa9.37□□□□□ -0.91
PTPRM-213ENST00000580949 ITGAEP38570 1179 aa9.37□□□□□ -0.91
PTPRM-213ENST00000580949 TSR1Q2NL82 804 aaKnown RBP9.37□□□□□ -0.91
PTPRM-213ENST00000580949 KCNK17Q96T54 332 aa9.37□□□□□ -0.91
PTPRM-213ENST00000580949 UACAQ9BZF9 1416 aa9.37□□□□□ -0.91
PTPRM-213ENST00000580949 LMOD2Q6P5Q4 547 aa9.36□□□□□ -0.91
PTPRM-213ENST00000580949 CDK11AQ9UQ88 783 aaPredicted RBP9.36□□□□□ -0.91
PTPRM-213ENST00000580949 FGD6Q6ZV73 1430 aa9.36□□□□□ -0.91
PTPRM-213ENST00000580949 PPP1R3GB7ZBB8 358 aa9.35□□□□□ -0.91
PTPRM-213ENST00000580949 TROQ12816 1431 aaPredicted RBP9.35□□□□□ -0.91
PTPRM-213ENST00000580949 MYOM3Q5VTT5 1437 aa9.35□□□□□ -0.91
PTPRM-213ENST00000580949 CDAN1Q8IWY9 1227 aa9.35□□□□□ -0.91
PTPRM-213ENST00000580949 CERKQ8TCT0 537 aa9.35□□□□□ -0.91
PTPRM-213ENST00000580949 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.35□□□□□ -0.91
PTPRM-213ENST00000580949 NUTM2FA1L443 756 aa9.34□□□□□ -0.91
PTPRM-213ENST00000580949 PLEKHD1A6NEE1 506 aa9.34□□□□□ -0.91
PTPRM-213ENST00000580949 PSEN2P49810 448 aa9.34□□□□□ -0.91
PTPRM-213ENST00000580949 CDHR5Q9HBB8 845 aa9.34□□□□□ -0.91
PTPRM-213ENST00000580949 PCDH10Q9P2E7 1040 aa9.34□□□□□ -0.91
PTPRM-213ENST00000580949 AXIN2Q9Y2T1 843 aa9.34□□□□□ -0.91
PTPRM-213ENST00000580949 COL9A1P20849 921 aa9.33□□□□□ -0.92
PTPRM-213ENST00000580949 CCER1Q8TC90 406 aaPredicted RBP9.33□□□□□ -0.92
PTPRM-213ENST00000580949 SUPT6HQ7KZ85 1726 aaKnown RBP9.32□□□□□ -0.92
PTPRM-213ENST00000580949 GPIHBP1Q8IV16 184 aa9.32□□□□□ -0.92
PTPRM-213ENST00000580949 KRTAP3-3Q9BYR6 98 aa9.32□□□□□ -0.92
PTPRM-213ENST00000580949 KRTAP3-2Q9BYR7 98 aa9.32□□□□□ -0.92
PTPRM-213ENST00000580949 NPDC1Q9NQX5 325 aaPredicted RBP9.32□□□□□ -0.92
PTPRM-213ENST00000580949 ZNF644Q9H582 1327 aaPredicted RBP9.31□□□□□ -0.92
PTPRM-213ENST00000580949 PTPRKQ15262 1439 aa9.31□□□□□ -0.92
PTPRM-213ENST00000580949 FCHSD2O94868 740 aa9.31□□□□□ -0.92
PTPRM-213ENST00000580949 LSM11P83369 360 aaKnown RBP eCLIP9.31□□□□□ -0.92
PTPRM-213ENST00000580949 PTGDRQ13258 359 aa9.31□□□□□ -0.92
PTPRM-213ENST00000580949 DMRTA1Q5VZB9 504 aa9.31□□□□□ -0.92
PTPRM-213ENST00000580949 SLC4A5Q9BY07 1137 aa9.31□□□□□ -0.92
PTPRM-213ENST00000580949 ABCC2Q92887 1545 aa9.31□□□□□ -0.92
PTPRM-213ENST00000580949 UHRF1BP1LA0JNW5 1464 aa9.3□□□□□ -0.92
PTPRM-213ENST00000580949 ZBED2Q9BTP6 218 aa9.3□□□□□ -0.92
PTPRM-213ENST00000580949 TCOF1Q13428 1488 aaKnown RBP9.29□□□□□ -0.92
PTPRM-213ENST00000580949 TK2O00142 265 aa9.29□□□□□ -0.92
PTPRM-213ENST00000580949 GPR37O15354 613 aa9.29□□□□□ -0.92
PTPRM-213ENST00000580949 MIA2Q96PC5 1412 aa9.29□□□□□ -0.92
PTPRM-213ENST00000580949 ABCC10Q5T3U5 1492 aa9.28□□□□□ -0.92
PTPRM-213ENST00000580949 GPATCH8Q9UKJ3 1502 aaKnown RBP9.28□□□□□ -0.92
PTPRM-213ENST00000580949 ONECUT3O60422 494 aaPredicted RBP9.28□□□□□ -0.92
PTPRM-213ENST00000580949 ZEB1P37275 1124 aaPredicted RBP9.28□□□□□ -0.92
PTPRM-213ENST00000580949 HIC1Q14526 733 aa9.28□□□□□ -0.92
PTPRM-213ENST00000580949 RBM27Q9P2N5 1060 aaKnown RBP9.28□□□□□ -0.92
PTPRM-213ENST00000580949 KIF14Q15058 1648 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms