RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 EFCAB6Q5THR3 1501 aa16.96■□□□□ 0.31
TOP3A-210ENST00000580713 KANK1Q14678 1352 aa16.96■□□□□ 0.31
TOP3A-210ENST00000580713 KIF15Q9NS87 1388 aa16.96■□□□□ 0.31
TOP3A-210ENST00000580713 NKTRP30414 1462 aaKnown RBP16.94■□□□□ 0.3
TOP3A-210ENST00000580713 C14orf37Q86TY3 774 aa16.93■□□□□ 0.3
TOP3A-210ENST00000580713 MYOM3Q5VTT5 1437 aa16.93■□□□□ 0.3
TOP3A-210ENST00000580713 SPATA31A6Q5VVP1 1343 aa16.93■□□□□ 0.3
TOP3A-210ENST00000580713 TET3O43151 1660 aa16.92■□□□□ 0.3
TOP3A-210ENST00000580713 RXRBP28702 533 aa16.92■□□□□ 0.3
TOP3A-210ENST00000580713 ERBINQ96RT1 1412 aa16.9■□□□□ 0.3
TOP3A-210ENST00000580713 PPP1R15AO75807 674 aaPredicted RBP16.9■□□□□ 0.3
TOP3A-210ENST00000580713 LRP6O75581 1613 aa16.89■□□□□ 0.29
TOP3A-210ENST00000580713 SLC4A1APQ9BWU0 796 aaKnown RBP16.89■□□□□ 0.29
TOP3A-210ENST00000580713 NWD1Q149M9 1564 aa16.89■□□□□ 0.29
TOP3A-210ENST00000580713 NUTM2BA6NNL0 878 aaPredicted RBP16.88■□□□□ 0.29
TOP3A-210ENST00000580713 NUTM2EB1AL46 878 aaPredicted RBP16.88■□□□□ 0.29
TOP3A-210ENST00000580713 NUTM2AQ8IVF1 878 aaPredicted RBP16.88■□□□□ 0.29
TOP3A-210ENST00000580713 FGD6Q6ZV73 1430 aa16.87■□□□□ 0.29
TOP3A-210ENST00000580713 KANK4Q5T7N3 995 aaPredicted RBP16.87■□□□□ 0.29
TOP3A-210ENST00000580713 COL16A1Q07092 1604 aaPredicted RBP16.87■□□□□ 0.29
TOP3A-210ENST00000580713 KDM5AP29375 1690 aaKnown RBP16.87■□□□□ 0.29
TOP3A-210ENST00000580713 ATF3P18847 181 aa16.86■□□□□ 0.29
TOP3A-210ENST00000580713 HDGFP51858 240 aaKnown RBP16.86■□□□□ 0.29
TOP3A-210ENST00000580713 SLC52A1Q9NWF4 448 aa16.86■□□□□ 0.29
TOP3A-210ENST00000580713 CADPS2Q86UW7 1296 aa16.85■□□□□ 0.29
TOP3A-210ENST00000580713 ADGRB3O60242 1522 aa16.85■□□□□ 0.29
TOP3A-210ENST00000580713 CHIC2Q9UKJ5 165 aa16.84■□□□□ 0.29
TOP3A-210ENST00000580713 ABCC5O15440 1437 aa16.84■□□□□ 0.29
TOP3A-210ENST00000580713 PLEKHG1Q9ULL1 1385 aa16.83■□□□□ 0.28
TOP3A-210ENST00000580713 NOS1P29475 1434 aa16.82■□□□□ 0.28
TOP3A-210ENST00000580713 C19orf44Q9H6X5 657 aa16.82■□□□□ 0.28
TOP3A-210ENST00000580713 LMTK2Q8IWU2 1503 aa16.81■□□□□ 0.28
TOP3A-210ENST00000580713 NCOA3Q9Y6Q9 1424 aa16.81■□□□□ 0.28
TOP3A-210ENST00000580713 AFF2P51816 1311 aa16.81■□□□□ 0.28
TOP3A-210ENST00000580713 CHGAP10645 457 aaKnown RBP16.81■□□□□ 0.28
TOP3A-210ENST00000580713 TBX22Q9Y458 520 aa16.81■□□□□ 0.28
TOP3A-210ENST00000580713 RIMS2Q9UQ26 1411 aa16.8■□□□□ 0.28
TOP3A-210ENST00000580713 CHD2O14647 1828 aaKnown RBP16.8■□□□□ 0.28
TOP3A-210ENST00000580713 VPS8Q8N3P4 1428 aa16.79■□□□□ 0.28
TOP3A-210ENST00000580713 ANKRD30AQ9BXX3 1397 aa16.79■□□□□ 0.28
TOP3A-210ENST00000580713 CDK12Q9NYV4 1490 aaPredicted RBP16.79■□□□□ 0.28
TOP3A-210ENST00000580713 AHDC1Q5TGY3 1603 aaPredicted RBP16.78■□□□□ 0.28
TOP3A-210ENST00000580713 NUTM2DQ5VT03 806 aaPredicted RBP16.78■□□□□ 0.28
TOP3A-210ENST00000580713 BRINP3Q76B58 766 aa16.78■□□□□ 0.28
TOP3A-210ENST00000580713 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.78■□□□□ 0.28
TOP3A-210ENST00000580713 SHPRHQ149N8 1683 aa16.78■□□□□ 0.28
TOP3A-210ENST00000580713 ZFYVE9O95405 1425 aa16.78■□□□□ 0.28
TOP3A-210ENST00000580713 DAPK1P53355 1430 aa16.78■□□□□ 0.28
TOP3A-210ENST00000580713 CROCC2H7BZ55 1655 aa16.76■□□□□ 0.27
TOP3A-210ENST00000580713 C8orf37Q96NL8 207 aa16.76■□□□□ 0.27
TOP3A-210ENST00000580713 QTRT2Q9H974 415 aaKnown RBP16.76■□□□□ 0.27
TOP3A-210ENST00000580713 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.75■□□□□ 0.27
TOP3A-210ENST00000580713 PTPN23Q9H3S7 1636 aa16.74■□□□□ 0.27
TOP3A-210ENST00000580713 RBM6P78332 1123 aaKnown RBP16.74■□□□□ 0.27
TOP3A-210ENST00000580713 AMOTL2Q9Y2J4 779 aa16.73■□□□□ 0.27
TOP3A-210ENST00000580713 RGS12O14924 1447 aa16.72■□□□□ 0.27
TOP3A-210ENST00000580713 MYO5BQ9ULV0 1848 aa16.71■□□□□ 0.27
TOP3A-210ENST00000580713 APLP2Q06481 763 aa16.71■□□□□ 0.27
TOP3A-210ENST00000580713 LRRC59Q96AG4 307 aaKnown RBP16.71■□□□□ 0.27
TOP3A-210ENST00000580713 DIP2AQ14689 1571 aa16.7■□□□□ 0.26
TOP3A-210ENST00000580713 RPRD2Q5VT52 1461 aaKnown RBP16.7■□□□□ 0.26
TOP3A-210ENST00000580713 PIK3R4Q99570 1358 aa16.7■□□□□ 0.26
TOP3A-210ENST00000580713 ADAMTS13Q76LX8 1427 aa16.7■□□□□ 0.26
TOP3A-210ENST00000580713 GCC2Q8IWJ2 1684 aa16.69■□□□□ 0.26
TOP3A-210ENST00000580713 NGLY1Q96IV0 654 aa16.69■□□□□ 0.26
TOP3A-210ENST00000580713 TMEM131LA2VDJ0 1609 aa16.68■□□□□ 0.26
TOP3A-210ENST00000580713 ZRANB1Q9UGI0 708 aa16.68■□□□□ 0.26
TOP3A-210ENST00000580713 SETD5Q9C0A6 1442 aa16.68■□□□□ 0.26
TOP3A-210ENST00000580713 ADAMTS2O95450 1211 aa16.67■□□□□ 0.26
TOP3A-210ENST00000580713 DDX17Q92841 729 aaKnown RBP16.67■□□□□ 0.26
TOP3A-210ENST00000580713 SRCAPQ6ZRS2 3230 aa16.67■□□□□ 0.26
TOP3A-210ENST00000580713 ATAD2Q6PL18 1390 aa16.66■□□□□ 0.26
TOP3A-210ENST00000580713 ASXL1Q8IXJ9 1541 aa16.66■□□□□ 0.26
TOP3A-210ENST00000580713 LOC105371045A0A1W2PR82 267 aa16.65■□□□□ 0.26
TOP3A-210ENST00000580713 TRPM2O94759 1503 aa16.65■□□□□ 0.26
TOP3A-210ENST00000580713 DCCP43146 1447 aa16.64■□□□□ 0.25
TOP3A-210ENST00000580713 PTPRUQ92729 1446 aa16.64■□□□□ 0.25
TOP3A-210ENST00000580713 ANKRD50Q9ULJ7 1429 aa16.64■□□□□ 0.25
TOP3A-210ENST00000580713 PNPLA6Q8IY17 1366 aa16.64■□□□□ 0.25
TOP3A-210ENST00000580713 FAM50AQ14320 339 aaKnown RBP16.63■□□□□ 0.25
TOP3A-210ENST00000580713 MST1RQ04912 1400 aa16.62■□□□□ 0.25
TOP3A-210ENST00000580713 RNF39Q9H2S5 420 aa16.61■□□□□ 0.25
TOP3A-210ENST00000580713 USP21Q9UK80 565 aa16.61■□□□□ 0.25
TOP3A-210ENST00000580713 TRPC5Q9UL62 973 aaPredicted RBP16.6■□□□□ 0.25
TOP3A-210ENST00000580713 ADGRL2O95490 1459 aa16.6■□□□□ 0.25
TOP3A-210ENST00000580713 NHSL1Q5SYE7 1610 aa16.59■□□□□ 0.25
TOP3A-210ENST00000580713 ZNF326Q5BKZ1 582 aaKnown RBP16.56■□□□□ 0.24
TOP3A-210ENST00000580713 UNC13BO14795 1591 aa16.55■□□□□ 0.24
TOP3A-210ENST00000580713 SETBP1Q9Y6X0 1596 aa16.55■□□□□ 0.24
TOP3A-210ENST00000580713 CCDC125Q86Z20 511 aa16.54■□□□□ 0.24
TOP3A-210ENST00000580713 ADGRL3Q9HAR2 1447 aa16.53■□□□□ 0.24
TOP3A-210ENST00000580713 METP08581 1390 aa16.53■□□□□ 0.24
TOP3A-210ENST00000580713 FNBP4Q8N3X1 1017 aaPredicted RBP16.52■□□□□ 0.24
TOP3A-210ENST00000580713 XRN1Q8IZH2 1706 aaKnown RBP16.52■□□□□ 0.24
TOP3A-210ENST00000580713 E9PCH4 1651 aa16.52■□□□□ 0.23
TOP3A-210ENST00000580713 C1orf167Q5SNV9 1468 aa16.51■□□□□ 0.23
TOP3A-210ENST00000580713 ORAI2Q96SN7 254 aa16.5■□□□□ 0.23
TOP3A-210ENST00000580713 ATRNO75882 1429 aa16.5■□□□□ 0.23
TOP3A-210ENST00000580713 SOS2Q07890 1332 aaPredicted RBP16.49■□□□□ 0.23
TOP3A-210ENST00000580713 PTCH1Q13635 1447 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms