RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 IFT172Q9UG01 1749 aa21.69■■□□□ 1.06
SS18-215ENST00000580642 NEXMIFQ5QGS0 1516 aa21.68■■□□□ 1.06
SS18-215ENST00000580642 GPRASP1Q5JY77 1395 aa21.66■■□□□ 1.06
SS18-215ENST00000580642 THEMISQ8N1K5 641 aaPredicted RBP21.65■■□□□ 1.06
SS18-215ENST00000580642 PPLO60437 1756 aa21.65■■□□□ 1.06
SS18-215ENST00000580642 SETD1BQ9UPS6 1966 aaKnown RBP21.65■■□□□ 1.06
SS18-215ENST00000580642 KIAA1210Q9ULL0 1709 aa21.63■■□□□ 1.05
SS18-215ENST00000580642 TMEM2Q9UHN6 1383 aa21.63■■□□□ 1.05
SS18-215ENST00000580642 PIK3C2GO75747 1445 aa21.63■■□□□ 1.05
SS18-215ENST00000580642 RIMS2Q9UQ26 1411 aa21.62■■□□□ 1.05
SS18-215ENST00000580642 ADGRF5Q8IZF2 1346 aa21.61■■□□□ 1.05
SS18-215ENST00000580642 UBR1Q8IWV7 1749 aa21.61■■□□□ 1.05
SS18-215ENST00000580642 LAMC1P11047 1609 aa21.61■■□□□ 1.05
SS18-215ENST00000580642 TRPM1Q7Z4N2 1603 aa21.61■■□□□ 1.05
SS18-215ENST00000580642 MYO3AQ8NEV4 1616 aa21.61■■□□□ 1.05
SS18-215ENST00000580642 ROCK2O75116 1388 aaKnown RBP21.61■■□□□ 1.05
SS18-215ENST00000580642 EIF4G2P78344 907 aaKnown RBP eCLIP21.6■■□□□ 1.05
SS18-215ENST00000580642 SLIT1O75093 1534 aa21.6■■□□□ 1.05
SS18-215ENST00000580642 ZNF316A6NFI3 1004 aaPredicted RBP21.59■■□□□ 1.05
SS18-215ENST00000580642 C14orf93Q9H972 538 aaKnown RBP21.59■■□□□ 1.05
SS18-215ENST00000580642 ARHGAP23Q9P227 1491 aa21.58■■□□□ 1.05
SS18-215ENST00000580642 CEP170BQ9Y4F5 1589 aaPredicted RBP21.58■■□□□ 1.05
SS18-215ENST00000580642 CARD11Q9BXL7 1154 aa21.58■■□□□ 1.05
SS18-215ENST00000580642 ZNF142P52746 1687 aaPredicted RBP21.56■■□□□ 1.04
SS18-215ENST00000580642 EID1Q9Y6B2 187 aa21.56■■□□□ 1.04
SS18-215ENST00000580642 SETBP1Q9Y6X0 1596 aa21.56■■□□□ 1.04
SS18-215ENST00000580642 KDM4FA0A1W2PPD8 638 aa21.55■■□□□ 1.04
SS18-215ENST00000580642 MYO5BQ9ULV0 1848 aa21.55■■□□□ 1.04
SS18-215ENST00000580642 PLPPR3Q6T4P5 718 aa21.53■■□□□ 1.04
SS18-215ENST00000580642 USP47Q96K76 1375 aa21.52■■□□□ 1.04
SS18-215ENST00000580642 NBPF1Q3BBV0 1214 aa21.51■■□□□ 1.03
SS18-215ENST00000580642 CFAP70Q5T0N1 1121 aa21.51■■□□□ 1.03
SS18-215ENST00000580642 PLEKHG1Q9ULL1 1385 aa21.5■■□□□ 1.03
SS18-215ENST00000580642 SLC24A1O60721 1099 aa21.5■■□□□ 1.03
SS18-215ENST00000580642 SCAF11Q99590 1463 aaKnown RBP21.5■■□□□ 1.03
SS18-215ENST00000580642 HSPA5P11021 654 aaKnown RBP21.49■■□□□ 1.03
SS18-215ENST00000580642 TXNDC2Q86VQ3 553 aa21.49■■□□□ 1.03
SS18-215ENST00000580642 EIF3AQ14152 1382 aaKnown RBP21.48■■□□□ 1.03
SS18-215ENST00000580642 ADGRB1O14514 1584 aa21.46■■□□□ 1.03
SS18-215ENST00000580642 NUTM2DQ5VT03 806 aaPredicted RBP21.45■■□□□ 1.02
SS18-215ENST00000580642 ANKLE2Q86XL3 938 aa21.45■■□□□ 1.02
SS18-215ENST00000580642 ALKQ9UM73 1620 aa21.44■■□□□ 1.02
SS18-215ENST00000580642 LTKP29376 864 aa21.44■■□□□ 1.02
SS18-215ENST00000580642 IQGAP1P46940 1657 aa21.41■■□□□ 1.02
SS18-215ENST00000580642 TBX22Q9Y458 520 aa21.41■■□□□ 1.02
SS18-215ENST00000580642 DIP2AQ14689 1571 aa21.4■■□□□ 1.02
SS18-215ENST00000580642 MED14O60244 1454 aa21.4■■□□□ 1.02
SS18-215ENST00000580642 ST20-MTHFSA0A0A6YYL1 179 aa21.39■■□□□ 1.01
SS18-215ENST00000580642 ADAMTS13Q76LX8 1427 aa21.38■■□□□ 1.01
SS18-215ENST00000580642 PIK3R4Q99570 1358 aa21.38■■□□□ 1.01
SS18-215ENST00000580642 NRXN3Q9Y4C0 1643 aa21.38■■□□□ 1.01
SS18-215ENST00000580642 SIRT1Q96EB6 747 aa21.38■■□□□ 1.01
SS18-215ENST00000580642 LRPPRCP42704 1394 aaKnown RBP21.37■■□□□ 1.01
SS18-215ENST00000580642 SBNO2Q9Y2G9 1366 aa21.37■■□□□ 1.01
SS18-215ENST00000580642 YTHDC2Q9H6S0 1430 aaKnown RBP21.37■■□□□ 1.01
SS18-215ENST00000580642 ABCC11Q96J66 1382 aa21.36■■□□□ 1.01
SS18-215ENST00000580642 TMEM132EQ6IEE7 984 aa21.35■■□□□ 1.01
SS18-215ENST00000580642 SETD1AO15047 1707 aaKnown RBP21.35■■□□□ 1.01
SS18-215ENST00000580642 ASXL1Q8IXJ9 1541 aa21.34■■□□□ 1.01
SS18-215ENST00000580642 DLC1Q96QB1 1528 aa21.34■■□□□ 1.01
SS18-215ENST00000580642 BCANQ96GW7 911 aa21.34■■□□□ 1.01
SS18-215ENST00000580642 TECPR2O15040 1411 aa21.33■■□□□ 1.01
SS18-215ENST00000580642 TESK2Q96S53 571 aa21.33■■□□□ 1.01
SS18-215ENST00000580642 CDCA8Q53HL2 280 aa21.32■■□□□ 1
SS18-215ENST00000580642 CENPJQ9HC77 1338 aaPredicted RBP21.31■■□□□ 1
SS18-215ENST00000580642 TMF1P82094 1093 aa21.31■■□□□ 1
SS18-215ENST00000580642 METP08581 1390 aa21.31■■□□□ 1
SS18-215ENST00000580642 NPHP4O75161 1426 aaPredicted RBP21.3■■□□□ 1
SS18-215ENST00000580642 HIRIP3Q9BW71 556 aaPredicted RBP21.3■■□□□ 1
SS18-215ENST00000580642 TRAK1Q9UPV9 953 aa21.3■■□□□ 1
SS18-215ENST00000580642 LMTK3Q96Q04 1460 aa21.3■■□□□ 1
SS18-215ENST00000580642 FAM135BQ49AJ0 1406 aa21.29■■□□□ 1
SS18-215ENST00000580642 CCDC7Q96M83 1385 aa21.29■■□□□ 1
SS18-215ENST00000580642 PUS7Q96PZ0 661 aaKnown RBP21.28■■□□□ 1
SS18-215ENST00000580642 WASHC2AQ641Q2 1341 aa21.27■□□□□ 0.99
SS18-215ENST00000580642 POLR1AO95602 1720 aaPredicted RBP21.26■□□□□ 0.99
SS18-215ENST00000580642 KNDC1Q76NI1 1749 aa21.25■□□□□ 0.99
SS18-215ENST00000580642 SLC26A8Q96RN1 970 aa21.25■□□□□ 0.99
SS18-215ENST00000580642 KIF7Q2M1P5 1343 aa21.25■□□□□ 0.99
SS18-215ENST00000580642 STK26Q9P289 416 aa21.24■□□□□ 0.99
SS18-215ENST00000580642 CPS1P31327 1500 aa21.24■□□□□ 0.99
SS18-215ENST00000580642 ARHGEF28Q8N1W1 1705 aaKnown RBP21.24■□□□□ 0.99
SS18-215ENST00000580642 PTCH1Q13635 1447 aa21.23■□□□□ 0.99
SS18-215ENST00000580642 C11orf95C9JLR9 678 aaPredicted RBP21.22■□□□□ 0.99
SS18-215ENST00000580642 POGKQ9P215 609 aa21.22■□□□□ 0.99
SS18-215ENST00000580642 NCKAP5LQ9HCH0 1330 aa21.21■□□□□ 0.99
SS18-215ENST00000580642 PRAM1Q96QH2 718 aa21.2■□□□□ 0.98
SS18-215ENST00000580642 DIEXFQ68CQ4 756 aaKnown RBP21.19■□□□□ 0.98
SS18-215ENST00000580642 AMOTL2Q9Y2J4 779 aa21.19■□□□□ 0.98
SS18-215ENST00000580642 EVC2Q86UK5 1308 aa21.19■□□□□ 0.98
SS18-215ENST00000580642 PTPRUQ92729 1446 aa21.18■□□□□ 0.98
SS18-215ENST00000580642 SENP3Q9H4L4 574 aaPredicted RBP21.17■□□□□ 0.98
SS18-215ENST00000580642 DISP3Q9P2K9 1392 aa21.17■□□□□ 0.98
SS18-215ENST00000580642 QRICH2Q9H0J4 1663 aa21.17■□□□□ 0.98
SS18-215ENST00000580642 KCNA6P17658 529 aa21.16■□□□□ 0.98
SS18-215ENST00000580642 XRN1Q8IZH2 1706 aaKnown RBP21.15■□□□□ 0.98
SS18-215ENST00000580642 HSPA2P54652 639 aa21.15■□□□□ 0.98
SS18-215ENST00000580642 DMRT2Q9Y5R5 561 aa21.15■□□□□ 0.98
SS18-215ENST00000580642 ROBO2Q9HCK4 1378 aa21.14■□□□□ 0.98
SS18-215ENST00000580642 DDX10Q13206 875 aaKnown RBP21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms