RNA–Protein interactions for RNA: ENST00000580014.1

RNF43-204, Transcript of ring finger protein 43, humanhuman

TSL 3

Gene RNF43, Length 497 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-204ENST00000580014 NCOA1Q15788 1441 aa10.79□□□□□ -0.68
RNF43-204ENST00000580014 C9orf84Q5VXU9 1444 aa10.79□□□□□ -0.68
RNF43-204ENST00000580014 TSPOAP1O95153 1857 aa10.78□□□□□ -0.68
RNF43-204ENST00000580014 SPAG9O60271 1321 aaKnown RBP10.78□□□□□ -0.68
RNF43-204ENST00000580014 RICTORQ6R327 1708 aa10.78□□□□□ -0.68
RNF43-204ENST00000580014 MS4A3Q96HJ5 214 aa10.77□□□□□ -0.69
RNF43-204ENST00000580014 TMEM106CQ9BVX2 250 aa10.77□□□□□ -0.69
RNF43-204ENST00000580014 ZFYVE16Q7Z3T8 1539 aa10.76□□□□□ -0.69
RNF43-204ENST00000580014 KCNV2Q8TDN2 545 aa10.76□□□□□ -0.69
RNF43-204ENST00000580014 INO80Q9ULG1 1556 aaPredicted RBP10.76□□□□□ -0.69
RNF43-204ENST00000580014 ANKRD30AQ9BXX3 1397 aa10.76□□□□□ -0.69
RNF43-204ENST00000580014 CROCC2H7BZ55 1655 aa10.76□□□□□ -0.69
RNF43-204ENST00000580014 HFM1A2PYH4 1435 aa10.75□□□□□ -0.69
RNF43-204ENST00000580014 GOLGA2Q08379 1002 aa10.75□□□□□ -0.69
RNF43-204ENST00000580014 NAIPQ13075 1403 aa10.75□□□□□ -0.69
RNF43-204ENST00000580014 ATP7AQ04656 1500 aa10.74□□□□□ -0.69
RNF43-204ENST00000580014 PLXNC1O60486 1568 aa10.74□□□□□ -0.69
RNF43-204ENST00000580014 HRCP23327 699 aa10.74□□□□□ -0.69
RNF43-204ENST00000580014 CHIC2Q9UKJ5 165 aa10.74□□□□□ -0.69
RNF43-204ENST00000580014 TRPC6Q9Y210 931 aa10.74□□□□□ -0.69
RNF43-204ENST00000580014 KIDINS220Q9ULH0 1771 aa10.73□□□□□ -0.69
RNF43-204ENST00000580014 ITGAEP38570 1179 aa10.73□□□□□ -0.69
RNF43-204ENST00000580014 MS4A4AQ96JQ5 239 aa10.73□□□□□ -0.69
RNF43-204ENST00000580014 DHX29Q7Z478 1369 aaKnown RBP10.73□□□□□ -0.69
RNF43-204ENST00000580014 HECW2Q9P2P5 1572 aa10.73□□□□□ -0.69
RNF43-204ENST00000580014 KDM6BO15054 1643 aa10.73□□□□□ -0.69
RNF43-204ENST00000580014 KIF15Q9NS87 1388 aa10.72□□□□□ -0.69
RNF43-204ENST00000580014 YEATS2Q9ULM3 1422 aa10.72□□□□□ -0.69
RNF43-204ENST00000580014 ATP10AO60312 1499 aa10.71□□□□□ -0.69
RNF43-204ENST00000580014 RRP7BPQ9NSQ0 103 aa10.71□□□□□ -0.69
RNF43-204ENST00000580014 REREQ9P2R6 1566 aa10.71□□□□□ -0.69
RNF43-204ENST00000580014 DIP2CQ9Y2E4 1556 aa10.7□□□□□ -0.7
RNF43-204ENST00000580014 DUOX2Q9NRD8 1548 aa10.7□□□□□ -0.7
RNF43-204ENST00000580014 SETD5Q9C0A6 1442 aa10.7□□□□□ -0.7
RNF43-204ENST00000580014 ACIN1Q9UKV3 1341 aaKnown RBP10.7□□□□□ -0.7
RNF43-204ENST00000580014 TIE1P35590 1138 aa10.7□□□□□ -0.7
RNF43-204ENST00000580014 MKRN3Q13064 507 aaKnown RBP10.7□□□□□ -0.7
RNF43-204ENST00000580014 PCGF6Q9BYE7 350 aa10.7□□□□□ -0.7
RNF43-204ENST00000580014 A2MP01023 1474 aa10.69□□□□□ -0.7
RNF43-204ENST00000580014 ERBINQ96RT1 1412 aa10.69□□□□□ -0.7
RNF43-204ENST00000580014 ANKRD50Q9ULJ7 1429 aa10.69□□□□□ -0.7
RNF43-204ENST00000580014 ADGBQ8N7X0 1667 aa10.69□□□□□ -0.7
RNF43-204ENST00000580014 ABCA6Q8N139 1617 aa10.69□□□□□ -0.7
RNF43-204ENST00000580014 AGLP35573 1532 aa10.68□□□□□ -0.7
RNF43-204ENST00000580014 ARHGEF40Q8TER5 1519 aa10.68□□□□□ -0.7
RNF43-204ENST00000580014 E2F4Q16254 413 aa10.67□□□□□ -0.7
RNF43-204ENST00000580014 NCKAP5LQ9HCH0 1330 aa10.66□□□□□ -0.7
RNF43-204ENST00000580014 TTLL13PA6NNM8 815 aa10.66□□□□□ -0.7
RNF43-204ENST00000580014 ARHGEF1Q92888 912 aaKnown RBP10.66□□□□□ -0.7
RNF43-204ENST00000580014 GCC2Q8IWJ2 1684 aa10.66□□□□□ -0.7
RNF43-204ENST00000580014 RAB3GAP2Q9H2M9 1393 aa10.65□□□□□ -0.7
RNF43-204ENST00000580014 BCORL1Q5H9F3 1711 aa10.65□□□□□ -0.7
RNF43-204ENST00000580014 PDE4AP27815 886 aa10.65□□□□□ -0.7
RNF43-204ENST00000580014 BMP2KQ9NSY1 1161 aaPredicted RBP10.64□□□□□ -0.71
RNF43-204ENST00000580014 MYT1LQ9UL68 1186 aa10.64□□□□□ -0.71
RNF43-204ENST00000580014 EIF2AK4Q9P2K8 1649 aaKnown RBP10.64□□□□□ -0.71
RNF43-204ENST00000580014 MFSD10Q14728 455 aa10.63□□□□□ -0.71
RNF43-204ENST00000580014 ILDR1Q86SU0 546 aaPredicted RBP10.63□□□□□ -0.71
RNF43-204ENST00000580014 CRISPLD2Q9H0B8 497 aa10.63□□□□□ -0.71
RNF43-204ENST00000580014 KIF3BO15066 747 aa10.62□□□□□ -0.71
RNF43-204ENST00000580014 LARP6Q9BRS8 491 aaKnown RBP10.62□□□□□ -0.71
RNF43-204ENST00000580014 VWDEQ8N2E2 1590 aa10.61□□□□□ -0.71
RNF43-204ENST00000580014 CLCN6P51797 869 aa10.61□□□□□ -0.71
RNF43-204ENST00000580014 KDM5DQ9BY66 1539 aa10.61□□□□□ -0.71
RNF43-204ENST00000580014 RNF17Q9BXT8 1623 aaKnown RBP10.61□□□□□ -0.71
RNF43-204ENST00000580014 DEPDC5O75140 1603 aa10.6□□□□□ -0.71
RNF43-204ENST00000580014 MROH1Q8NDA8 1641 aa10.6□□□□□ -0.71
RNF43-204ENST00000580014 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.6□□□□□ -0.71
RNF43-204ENST00000580014 UNC13BO14795 1591 aa10.6□□□□□ -0.71
RNF43-204ENST00000580014 PRDM15P57071 1507 aaPredicted RBP10.59□□□□□ -0.71
RNF43-204ENST00000580014 FAM135AQ9P2D6 1515 aa10.59□□□□□ -0.71
RNF43-204ENST00000580014 SIGLEC1Q9BZZ2 1709 aa10.59□□□□□ -0.71
RNF43-204ENST00000580014 GALR2O43603 387 aaPredicted RBP10.59□□□□□ -0.71
RNF43-204ENST00000580014 LMOD2Q6P5Q4 547 aa10.59□□□□□ -0.71
RNF43-204ENST00000580014 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.59□□□□□ -0.71
RNF43-204ENST00000580014 TRIM35Q9UPQ4 493 aa10.59□□□□□ -0.71
RNF43-204ENST00000580014 LMTK2Q8IWU2 1503 aa10.58□□□□□ -0.72
RNF43-204ENST00000580014 PZPP20742 1482 aa10.58□□□□□ -0.72
RNF43-204ENST00000580014 NUP155O75694 1391 aa10.58□□□□□ -0.72
RNF43-204ENST00000580014 DDX27Q96GQ7 796 aaKnown RBP10.58□□□□□ -0.72
RNF43-204ENST00000580014 HAX1O00165 279 aa10.57□□□□□ -0.72
RNF43-204ENST00000580014 TULP1O00294 542 aaPredicted RBP10.57□□□□□ -0.72
RNF43-204ENST00000580014 KANK1Q14678 1352 aa10.55□□□□□ -0.72
RNF43-204ENST00000580014 GGT6Q6P531 493 aa10.55□□□□□ -0.72
RNF43-204ENST00000580014 MPHOSPH9Q99550 1183 aa10.55□□□□□ -0.72
RNF43-204ENST00000580014 ARIH1Q9Y4X5 557 aaPredicted RBP10.55□□□□□ -0.72
RNF43-204ENST00000580014 ARHGAP31Q2M1Z3 1444 aa10.55□□□□□ -0.72
RNF43-204ENST00000580014 IQGAP3Q86VI3 1631 aa10.55□□□□□ -0.72
RNF43-204ENST00000580014 DHX57Q6P158 1386 aaKnown RBP10.54□□□□□ -0.72
RNF43-204ENST00000580014 ABCC3O15438 1527 aa10.54□□□□□ -0.72
RNF43-204ENST00000580014 TRIM52Q96A61 297 aa10.54□□□□□ -0.72
RNF43-204ENST00000580014 ARID4BQ4LE39 1312 aaPredicted RBP10.54□□□□□ -0.72
RNF43-204ENST00000580014 CNTLNQ9NXG0 1405 aa10.53□□□□□ -0.72
RNF43-204ENST00000580014 TESPA1A2RU30 521 aaPredicted RBP10.53□□□□□ -0.72
RNF43-204ENST00000580014 CAMK2BQ13554 666 aa10.53□□□□□ -0.72
RNF43-204ENST00000580014 WASHC2CQ9Y4E1 1318 aa10.53□□□□□ -0.72
RNF43-204ENST00000580014 EVX2Q03828 476 aa10.52□□□□□ -0.73
RNF43-204ENST00000580014 RPRD2Q5VT52 1461 aaKnown RBP10.51□□□□□ -0.73
RNF43-204ENST00000580014 SEMA3EO15041 775 aa10.51□□□□□ -0.73
RNF43-204ENST00000580014 CLSPNQ9HAW4 1339 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms