RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PPLO60437 1756 aa35.69■■■■□ 3.3
SHMT1-207ENST00000580002 MYOM2P54296 1465 aa35.67■■■■□ 3.3
SHMT1-207ENST00000580002 NLRP1Q9C000 1473 aa35.67■■■■□ 3.3
SHMT1-207ENST00000580002 RALGAPBQ86X10 1494 aa35.66■■■■□ 3.3
SHMT1-207ENST00000580002 STAC3Q96MF2 364 aa35.66■■■■□ 3.3
SHMT1-207ENST00000580002 CFAP70Q5T0N1 1121 aa35.64■■■■□ 3.3
SHMT1-207ENST00000580002 ZNF316A6NFI3 1004 aaPredicted RBP35.64■■■■□ 3.3
SHMT1-207ENST00000580002 TRPM1Q7Z4N2 1603 aa35.63■■■■□ 3.29
SHMT1-207ENST00000580002 NRXN1Q9ULB1 1477 aa35.63■■■■□ 3.29
SHMT1-207ENST00000580002 UBR1Q8IWV7 1749 aa35.63■■■■□ 3.29
SHMT1-207ENST00000580002 VGFO15240 615 aaPredicted RBP35.61■■■■□ 3.29
SHMT1-207ENST00000580002 RIMS2Q9UQ26 1411 aa35.61■■■■□ 3.29
SHMT1-207ENST00000580002 ROCK2O75116 1388 aaKnown RBP35.61■■■■□ 3.29
SHMT1-207ENST00000580002 MYO3AQ8NEV4 1616 aa35.61■■■■□ 3.29
SHMT1-207ENST00000580002 CARD11Q9BXL7 1154 aa35.6■■■■□ 3.29
SHMT1-207ENST00000580002 HSPA5P11021 654 aaKnown RBP35.59■■■■□ 3.29
SHMT1-207ENST00000580002 ZFYVE9O95405 1425 aa35.57■■■■□ 3.29
SHMT1-207ENST00000580002 PIK3C2GO75747 1445 aa35.56■■■■□ 3.28
SHMT1-207ENST00000580002 TMEM2Q9UHN6 1383 aa35.55■■■■□ 3.28
SHMT1-207ENST00000580002 LTKP29376 864 aa35.53■■■■□ 3.28
SHMT1-207ENST00000580002 EIF4G2P78344 907 aaKnown RBP eCLIP35.53■■■■□ 3.28
SHMT1-207ENST00000580002 C14orf93Q9H972 538 aaKnown RBP35.52■■■■□ 3.28
SHMT1-207ENST00000580002 GPRASP1Q5JY77 1395 aa35.51■■■■□ 3.27
SHMT1-207ENST00000580002 CEP170BQ9Y4F5 1589 aaPredicted RBP35.51■■■■□ 3.27
SHMT1-207ENST00000580002 KDM5AP29375 1690 aaKnown RBP35.5■■■■□ 3.27
SHMT1-207ENST00000580002 TMEM132EQ6IEE7 984 aa35.48■■■■□ 3.27
SHMT1-207ENST00000580002 USP47Q96K76 1375 aa35.48■■■■□ 3.27
SHMT1-207ENST00000580002 SETD1BQ9UPS6 1966 aaKnown RBP35.48■■■■□ 3.27
SHMT1-207ENST00000580002 THEMISQ8N1K5 641 aaPredicted RBP35.48■■■■□ 3.27
SHMT1-207ENST00000580002 TXNDC2Q86VQ3 553 aa35.45■■■■□ 3.27
SHMT1-207ENST00000580002 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.45■■■■□ 3.27
SHMT1-207ENST00000580002 ARHGAP23Q9P227 1491 aa35.41■■■■□ 3.26
SHMT1-207ENST00000580002 KIAA1210Q9ULL0 1709 aa35.4■■■■□ 3.26
SHMT1-207ENST00000580002 SLIT1O75093 1534 aa35.4■■■■□ 3.26
SHMT1-207ENST00000580002 ST20-MTHFSA0A0A6YYL1 179 aa35.39■■■■□ 3.26
SHMT1-207ENST00000580002 HDGFP51858 240 aaKnown RBP35.38■■■■□ 3.25
SHMT1-207ENST00000580002 ZNF142P52746 1687 aaPredicted RBP35.37■■■■□ 3.25
SHMT1-207ENST00000580002 C11orf95C9JLR9 678 aaPredicted RBP35.36■■■■□ 3.25
SHMT1-207ENST00000580002 ADGRB1O14514 1584 aa35.35■■■■□ 3.25
SHMT1-207ENST00000580002 BCANQ96GW7 911 aa35.35■■■■□ 3.25
SHMT1-207ENST00000580002 EID1Q9Y6B2 187 aa35.35■■■■□ 3.25
SHMT1-207ENST00000580002 ALKQ9UM73 1620 aa35.34■■■■□ 3.25
SHMT1-207ENST00000580002 LAMC1P11047 1609 aa35.33■■■■□ 3.25
SHMT1-207ENST00000580002 NRXN3Q9Y4C0 1643 aa35.33■■■■□ 3.25
SHMT1-207ENST00000580002 ASXL1Q8IXJ9 1541 aa35.32■■■■□ 3.25
SHMT1-207ENST00000580002 TRAK1Q9UPV9 953 aa35.31■■■■□ 3.24
SHMT1-207ENST00000580002 SCAF11Q99590 1463 aaKnown RBP35.29■■■■□ 3.24
SHMT1-207ENST00000580002 SETBP1Q9Y6X0 1596 aa35.28■■■■□ 3.24
SHMT1-207ENST00000580002 STK26Q9P289 416 aa35.28■■■■□ 3.24
SHMT1-207ENST00000580002 PLEKHG1Q9ULL1 1385 aa35.28■■■■□ 3.24
SHMT1-207ENST00000580002 SLC26A8Q96RN1 970 aa35.28■■■■□ 3.24
SHMT1-207ENST00000580002 IQGAP1P46940 1657 aa35.27■■■■□ 3.24
SHMT1-207ENST00000580002 ADAMTS13Q76LX8 1427 aa35.26■■■■□ 3.24
SHMT1-207ENST00000580002 METP08581 1390 aa35.26■■■■□ 3.23
SHMT1-207ENST00000580002 HSPA2P54652 639 aa35.24■■■■□ 3.23
SHMT1-207ENST00000580002 ANKLE2Q86XL3 938 aa35.24■■■■□ 3.23
SHMT1-207ENST00000580002 SETD1AO15047 1707 aaKnown RBP35.23■■■■□ 3.23
SHMT1-207ENST00000580002 TESK2Q96S53 571 aa35.22■■■■□ 3.23
SHMT1-207ENST00000580002 NCKAP5LQ9HCH0 1330 aa35.22■■■■□ 3.23
SHMT1-207ENST00000580002 WASHC2AQ641Q2 1341 aa35.21■■■■□ 3.23
SHMT1-207ENST00000580002 YTHDC2Q9H6S0 1430 aaKnown RBP35.17■■■■□ 3.22
SHMT1-207ENST00000580002 MED14O60244 1454 aa35.16■■■■□ 3.22
SHMT1-207ENST00000580002 KIF7Q2M1P5 1343 aa35.13■■■■□ 3.21
SHMT1-207ENST00000580002 DDX10Q13206 875 aaKnown RBP35.13■■■■□ 3.21
SHMT1-207ENST00000580002 LMTK3Q96Q04 1460 aa35.12■■■■□ 3.21
SHMT1-207ENST00000580002 SAFB2Q14151 953 aaKnown RBP eCLIP35.11■■■■□ 3.21
SHMT1-207ENST00000580002 TBX22Q9Y458 520 aa35.1■■■■□ 3.21
SHMT1-207ENST00000580002 CCDC7Q96M83 1385 aa35.1■■■■□ 3.21
SHMT1-207ENST00000580002 POLR3GLQ9BT43 218 aa35.1■■■■□ 3.21
SHMT1-207ENST00000580002 EIF3AQ14152 1382 aaKnown RBP35.1■■■■□ 3.21
SHMT1-207ENST00000580002 LRPPRCP42704 1394 aaKnown RBP35.09■■■■□ 3.21
SHMT1-207ENST00000580002 DISP3Q9P2K9 1392 aa35.09■■■■□ 3.21
SHMT1-207ENST00000580002 CENPJQ9HC77 1338 aaPredicted RBP35.09■■■■□ 3.21
SHMT1-207ENST00000580002 PTPRUQ92729 1446 aa35.08■■■■□ 3.21
SHMT1-207ENST00000580002 DIEXFQ68CQ4 756 aaKnown RBP35.07■■■■□ 3.2
SHMT1-207ENST00000580002 WAPLQ7Z5K2 1190 aa35.07■■■■□ 3.2
SHMT1-207ENST00000580002 PRAM1Q96QH2 718 aa35.06■■■■□ 3.2
SHMT1-207ENST00000580002 ARHGEF28Q8N1W1 1705 aaKnown RBP35.05■■■■□ 3.2
SHMT1-207ENST00000580002 NPHP4O75161 1426 aaPredicted RBP35.05■■■■□ 3.2
SHMT1-207ENST00000580002 ABCC11Q96J66 1382 aa35.04■■■■□ 3.2
SHMT1-207ENST00000580002 PLEKHH1Q9ULM0 1364 aa35.04■■■■□ 3.2
SHMT1-207ENST00000580002 AMOTL2Q9Y2J4 779 aa35■■■■□ 3.19
SHMT1-207ENST00000580002 TMF1P82094 1093 aa34.99■■■■□ 3.19
SHMT1-207ENST00000580002 POGKQ9P215 609 aa34.99■■■■□ 3.19
SHMT1-207ENST00000580002 POLR1AO95602 1720 aaPredicted RBP34.98■■■■□ 3.19
SHMT1-207ENST00000580002 ROBO2Q9HCK4 1378 aa34.96■■■■□ 3.19
SHMT1-207ENST00000580002 QRICH2Q9H0J4 1663 aa34.95■■■■□ 3.19
SHMT1-207ENST00000580002 MINK1Q8N4C8 1332 aaPredicted RBP34.95■■■■□ 3.19
SHMT1-207ENST00000580002 DIP2AQ14689 1571 aa34.94■■■■□ 3.18
SHMT1-207ENST00000580002 DLC1Q96QB1 1528 aa34.93■■■■□ 3.18
SHMT1-207ENST00000580002 TECPR2O15040 1411 aa34.92■■■■□ 3.18
SHMT1-207ENST00000580002 KCNA6P17658 529 aa34.9■■■■□ 3.18
SHMT1-207ENST00000580002 SBNO2Q9Y2G9 1366 aa34.9■■■■□ 3.18
SHMT1-207ENST00000580002 SIRT1Q96EB6 747 aa34.87■■■■□ 3.17
SHMT1-207ENST00000580002 CPS1P31327 1500 aa34.86■■■■□ 3.17
SHMT1-207ENST00000580002 KNDC1Q76NI1 1749 aa34.86■■■■□ 3.17
SHMT1-207ENST00000580002 STRCQ7RTU9 1775 aa34.85■■■■□ 3.17
SHMT1-207ENST00000580002 TULP4Q9NRJ4 1543 aa34.84■■■■□ 3.17
SHMT1-207ENST00000580002 PIK3R4Q99570 1358 aa34.84■■■■□ 3.17
SHMT1-207ENST00000580002 FAM135BQ49AJ0 1406 aa34.83■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms