RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 MSH6P52701 1360 aa15.27■□□□□ 0.04
SS18-210ENST00000578700 CHGAP10645 457 aaKnown RBP15.27■□□□□ 0.04
SS18-210ENST00000578700 C14orf37Q86TY3 774 aa15.27■□□□□ 0.04
SS18-210ENST00000578700 NKTRP30414 1462 aaKnown RBP15.27■□□□□ 0.03
SS18-210ENST00000578700 DAPK1P53355 1430 aa15.26■□□□□ 0.03
SS18-210ENST00000578700 ANKRD30AQ9BXX3 1397 aa15.26■□□□□ 0.03
SS18-210ENST00000578700 ADGRB3O60242 1522 aa15.26■□□□□ 0.03
SS18-210ENST00000578700 CHD2O14647 1828 aaKnown RBP15.25■□□□□ 0.03
SS18-210ENST00000578700 MEX3CQ5U5Q3 659 aaKnown RBP15.25■□□□□ 0.03
SS18-210ENST00000578700 SLC52A1Q9NWF4 448 aa15.25■□□□□ 0.03
SS18-210ENST00000578700 MYO5BQ9ULV0 1848 aa15.24■□□□□ 0.03
SS18-210ENST00000578700 PHLPP1O60346 1717 aa15.24■□□□□ 0.03
SS18-210ENST00000578700 NUTM2DQ5VT03 806 aaPredicted RBP15.24■□□□□ 0.03
SS18-210ENST00000578700 NOS1P29475 1434 aa15.24■□□□□ 0.03
SS18-210ENST00000578700 HDGFP51858 240 aaKnown RBP15.23■□□□□ 0.03
SS18-210ENST00000578700 FAM50AQ14320 339 aaKnown RBP15.23■□□□□ 0.03
SS18-210ENST00000578700 JCADQ9P266 1359 aa15.23■□□□□ 0.03
SS18-210ENST00000578700 TRIM52Q96A61 297 aa15.21■□□□□ 0.03
SS18-210ENST00000578700 SETD1AO15047 1707 aaKnown RBP15.2■□□□□ 0.02
SS18-210ENST00000578700 FGD6Q6ZV73 1430 aa15.2■□□□□ 0.02
SS18-210ENST00000578700 RPRD2Q5VT52 1461 aaKnown RBP15.19■□□□□ 0.02
SS18-210ENST00000578700 GCC2Q8IWJ2 1684 aa15.19■□□□□ 0.02
SS18-210ENST00000578700 ATF3P18847 181 aa15.18■□□□□ 0.02
SS18-210ENST00000578700 RIMS2Q9UQ26 1411 aa15.17■□□□□ 0.02
SS18-210ENST00000578700 PLEKHG1Q9ULL1 1385 aa15.17■□□□□ 0.02
SS18-210ENST00000578700 NUTM2BA6NNL0 878 aaPredicted RBP15.17■□□□□ 0.02
SS18-210ENST00000578700 NUTM2EB1AL46 878 aaPredicted RBP15.17■□□□□ 0.02
SS18-210ENST00000578700 NUTM2AQ8IVF1 878 aaPredicted RBP15.17■□□□□ 0.02
SS18-210ENST00000578700 TBX22Q9Y458 520 aa15.17■□□□□ 0.02
SS18-210ENST00000578700 COL16A1Q07092 1604 aaPredicted RBP15.17■□□□□ 0.02
SS18-210ENST00000578700 ZFYVE9O95405 1425 aa15.17■□□□□ 0.02
SS18-210ENST00000578700 ADGRL2O95490 1459 aa15.16■□□□□ 0.02
SS18-210ENST00000578700 ZNF772Q68DY9 489 aaPredicted RBP15.16■□□□□ 0.02
SS18-210ENST00000578700 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.16■□□□□ 0.02
SS18-210ENST00000578700 TMEM131LA2VDJ0 1609 aa15.15■□□□□ 0.02
SS18-210ENST00000578700 CADPS2Q86UW7 1296 aa15.15■□□□□ 0.02
SS18-210ENST00000578700 NCOA3Q9Y6Q9 1424 aa15.15■□□□□ 0.02
SS18-210ENST00000578700 UPF1Q92900 1129 aaKnown RBP eCLIP15.14■□□□□ 0.01
SS18-210ENST00000578700 C19orf44Q9H6X5 657 aa15.14■□□□□ 0.01
SS18-210ENST00000578700 SPATA31A6Q5VVP1 1343 aa15.14■□□□□ 0.01
SS18-210ENST00000578700 ANKRD50Q9ULJ7 1429 aa15.13■□□□□ 0.01
SS18-210ENST00000578700 SHPRHQ149N8 1683 aa15.12■□□□□ 0.01
SS18-210ENST00000578700 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.12■□□□□ 0.01
SS18-210ENST00000578700 RXRBP28702 533 aa15.12■□□□□ 0.01
SS18-210ENST00000578700 AMOTL2Q9Y2J4 779 aa15.12■□□□□ 0.01
SS18-210ENST00000578700 DIP2AQ14689 1571 aa15.11■□□□□ 0.01
SS18-210ENST00000578700 LRP6O75581 1613 aa15.1■□□□□ 0.01
SS18-210ENST00000578700 AHDC1Q5TGY3 1603 aaPredicted RBP15.1■□□□□ 0.01
SS18-210ENST00000578700 HRCP23327 699 aa15.1■□□□□ 0.01
SS18-210ENST00000578700 RRBP1Q9P2E9 1410 aaKnown RBP15.09■□□□□ 0.01
SS18-210ENST00000578700 BRINP3Q76B58 766 aa15.09■□□□□ 0.01
SS18-210ENST00000578700 UNC13BO14795 1591 aa15.08■□□□□ 0
SS18-210ENST00000578700 ZEB1P37275 1124 aaPredicted RBP15.08■□□□□ 0
SS18-210ENST00000578700 E9PCH4 1651 aa15.08■□□□□ 0
SS18-210ENST00000578700 PIK3R4Q99570 1358 aa15.08■□□□□ 0
SS18-210ENST00000578700 SRCAPQ6ZRS2 3230 aa15.07■□□□□ 0
SS18-210ENST00000578700 ITGAEP38570 1179 aa15.07■□□□□ 0
SS18-210ENST00000578700 ADAMTS13Q76LX8 1427 aa15.07■□□□□ 0
SS18-210ENST00000578700 AFF2P51816 1311 aa15.06■□□□□ 0
SS18-210ENST00000578700 ZNF326Q5BKZ1 582 aaKnown RBP15.05■□□□□ -0
SS18-210ENST00000578700 DDX17Q92841 729 aaKnown RBP15.05■□□□□ -0
SS18-210ENST00000578700 C8orf37Q96NL8 207 aa15.05■□□□□ -0
SS18-210ENST00000578700 TRPM2O94759 1503 aa15.04■□□□□ -0
SS18-210ENST00000578700 IQGAP3Q86VI3 1631 aa15.03■□□□□ -0
SS18-210ENST00000578700 PTPRUQ92729 1446 aa15.03■□□□□ -0
SS18-210ENST00000578700 QTRT2Q9H974 415 aaKnown RBP15.03■□□□□ -0
SS18-210ENST00000578700 NUP155O75694 1391 aa15.02■□□□□ -0
SS18-210ENST00000578700 CCER1Q8TC90 406 aaPredicted RBP15.02■□□□□ -0
SS18-210ENST00000578700 LRRC59Q96AG4 307 aaKnown RBP15.02■□□□□ -0
SS18-210ENST00000578700 DCCP43146 1447 aa15.01□□□□□ -0.01
SS18-210ENST00000578700 NHSL1Q5SYE7 1610 aa15.01□□□□□ -0.01
SS18-210ENST00000578700 CDK12Q9NYV4 1490 aaPredicted RBP15.01□□□□□ -0.01
SS18-210ENST00000578700 ADAMTS2O95450 1211 aa15□□□□□ -0.01
SS18-210ENST00000578700 XRN1Q8IZH2 1706 aaKnown RBP15□□□□□ -0.01
SS18-210ENST00000578700 NGLY1Q96IV0 654 aa14.98□□□□□ -0.01
SS18-210ENST00000578700 NRXN3Q9Y4C0 1643 aa14.98□□□□□ -0.01
SS18-210ENST00000578700 ASXL1Q8IXJ9 1541 aa14.97□□□□□ -0.01
SS18-210ENST00000578700 RBM6P78332 1123 aaKnown RBP14.97□□□□□ -0.01
SS18-210ENST00000578700 SETD5Q9C0A6 1442 aa14.97□□□□□ -0.01
SS18-210ENST00000578700 SETBP1Q9Y6X0 1596 aa14.97□□□□□ -0.01
SS18-210ENST00000578700 SPHKAPQ2M3C7 1700 aa14.96□□□□□ -0.01
SS18-210ENST00000578700 METP08581 1390 aa14.96□□□□□ -0.02
SS18-210ENST00000578700 ROCK1Q13464 1354 aa14.96□□□□□ -0.02
SS18-210ENST00000578700 MST1RQ04912 1400 aa14.95□□□□□ -0.02
SS18-210ENST00000578700 EP400Q96L91 3159 aa14.94□□□□□ -0.02
SS18-210ENST00000578700 PNPLA6Q8IY17 1366 aa14.93□□□□□ -0.02
SS18-210ENST00000578700 NALCNQ8IZF0 1738 aa14.92□□□□□ -0.02
SS18-210ENST00000578700 USP21Q9UK80 565 aa14.92□□□□□ -0.02
SS18-210ENST00000578700 RGS12O14924 1447 aa14.92□□□□□ -0.02
SS18-210ENST00000578700 ORAI2Q96SN7 254 aa14.91□□□□□ -0.02
SS18-210ENST00000578700 ADGRL3Q9HAR2 1447 aa14.9□□□□□ -0.02
SS18-210ENST00000578700 LAMC1P11047 1609 aa14.89□□□□□ -0.03
SS18-210ENST00000578700 KIF1BO60333 1816 aa14.89□□□□□ -0.03
SS18-210ENST00000578700 TRPC5Q9UL62 973 aaPredicted RBP14.88□□□□□ -0.03
SS18-210ENST00000578700 C1orf167Q5SNV9 1468 aa14.87□□□□□ -0.03
SS18-210ENST00000578700 NEXMIFQ5QGS0 1516 aa14.86□□□□□ -0.03
SS18-210ENST00000578700 ATAD2Q6PL18 1390 aa14.85□□□□□ -0.03
SS18-210ENST00000578700 CLTCL1P53675 1640 aa14.84□□□□□ -0.03
SS18-210ENST00000578700 VGFO15240 615 aaPredicted RBP14.84□□□□□ -0.03
SS18-210ENST00000578700 ESCO1Q5FWF5 840 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms