RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 NOS1P29475 1434 aa21.97■■□□□ 1.11
CIITA-211ENST00000576601 IDI1Q13907 227 aa21.96■■□□□ 1.11
CIITA-211ENST00000576601 SLAIN2Q9P270 581 aa21.96■■□□□ 1.11
CIITA-211ENST00000576601 ZFYVE9O95405 1425 aa21.94■■□□□ 1.1
CIITA-211ENST00000576601 VPS8Q8N3P4 1428 aa21.93■■□□□ 1.1
CIITA-211ENST00000576601 ABCC5O15440 1437 aa21.92■■□□□ 1.1
CIITA-211ENST00000576601 LOC105371045A0A1W2PR82 267 aa21.92■■□□□ 1.1
CIITA-211ENST00000576601 CDK12Q9NYV4 1490 aaPredicted RBP21.91■■□□□ 1.1
CIITA-211ENST00000576601 SPATA31A6Q5VVP1 1343 aa21.91■■□□□ 1.1
CIITA-211ENST00000576601 TRIM52Q96A61 297 aa21.91■■□□□ 1.1
CIITA-211ENST00000576601 PTPN23Q9H3S7 1636 aa21.91■■□□□ 1.1
CIITA-211ENST00000576601 STAG3Q9UJ98 1225 aa21.9■■□□□ 1.1
CIITA-211ENST00000576601 TMEM131LA2VDJ0 1609 aa21.89■■□□□ 1.09
CIITA-211ENST00000576601 ZNF772Q68DY9 489 aaPredicted RBP21.87■■□□□ 1.09
CIITA-211ENST00000576601 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.87■■□□□ 1.09
CIITA-211ENST00000576601 PLEKHG1Q9ULL1 1385 aa21.87■■□□□ 1.09
CIITA-211ENST00000576601 KANK1Q14678 1352 aa21.86■■□□□ 1.09
CIITA-211ENST00000576601 NHSL1Q5SYE7 1610 aa21.85■■□□□ 1.09
CIITA-211ENST00000576601 KANK4Q5T7N3 995 aaPredicted RBP21.85■■□□□ 1.09
CIITA-211ENST00000576601 RRP7BPQ9NSQ0 103 aa21.85■■□□□ 1.09
CIITA-211ENST00000576601 DAPK1P53355 1430 aa21.85■■□□□ 1.09
CIITA-211ENST00000576601 NCOA3Q9Y6Q9 1424 aa21.85■■□□□ 1.09
CIITA-211ENST00000576601 MEX3CQ5U5Q3 659 aaKnown RBP21.82■■□□□ 1.08
CIITA-211ENST00000576601 RGS12O14924 1447 aa21.81■■□□□ 1.08
CIITA-211ENST00000576601 ADAMTS13Q76LX8 1427 aa21.8■■□□□ 1.08
CIITA-211ENST00000576601 RIMS2Q9UQ26 1411 aa21.8■■□□□ 1.08
CIITA-211ENST00000576601 RPRD2Q5VT52 1461 aaKnown RBP21.8■■□□□ 1.08
CIITA-211ENST00000576601 RXRBP28702 533 aa21.78■■□□□ 1.08
CIITA-211ENST00000576601 ASXL1Q8IXJ9 1541 aa21.78■■□□□ 1.08
CIITA-211ENST00000576601 SLC52A1Q9NWF4 448 aa21.77■■□□□ 1.08
CIITA-211ENST00000576601 XRN1Q8IZH2 1706 aaKnown RBP21.77■■□□□ 1.08
CIITA-211ENST00000576601 UNC13BO14795 1591 aa21.74■■□□□ 1.07
CIITA-211ENST00000576601 BCANQ96GW7 911 aa21.74■■□□□ 1.07
CIITA-211ENST00000576601 AFF2P51816 1311 aa21.74■■□□□ 1.07
CIITA-211ENST00000576601 NRXN3Q9Y4C0 1643 aa21.73■■□□□ 1.07
CIITA-211ENST00000576601 SETD5Q9C0A6 1442 aa21.73■■□□□ 1.07
CIITA-211ENST00000576601 BRINP3Q76B58 766 aa21.73■■□□□ 1.07
CIITA-211ENST00000576601 E9PCH4 1651 aa21.72■■□□□ 1.07
CIITA-211ENST00000576601 CADPS2Q86UW7 1296 aa21.72■■□□□ 1.07
CIITA-211ENST00000576601 TBX22Q9Y458 520 aa21.72■■□□□ 1.07
CIITA-211ENST00000576601 PTPRUQ92729 1446 aa21.72■■□□□ 1.07
CIITA-211ENST00000576601 ADGRL2O95490 1459 aa21.71■■□□□ 1.07
CIITA-211ENST00000576601 TRPM2O94759 1503 aa21.71■■□□□ 1.07
CIITA-211ENST00000576601 ANKRD30AQ9BXX3 1397 aa21.71■■□□□ 1.07
CIITA-211ENST00000576601 DCCP43146 1447 aa21.71■■□□□ 1.07
CIITA-211ENST00000576601 C19orf44Q9H6X5 657 aa21.7■■□□□ 1.06
CIITA-211ENST00000576601 PIK3R4Q99570 1358 aa21.7■■□□□ 1.06
CIITA-211ENST00000576601 NUTM2BA6NNL0 878 aaPredicted RBP21.68■■□□□ 1.06
CIITA-211ENST00000576601 NUTM2EB1AL46 878 aaPredicted RBP21.68■■□□□ 1.06
CIITA-211ENST00000576601 C14orf37Q86TY3 774 aa21.68■■□□□ 1.06
CIITA-211ENST00000576601 NUTM2AQ8IVF1 878 aaPredicted RBP21.68■■□□□ 1.06
CIITA-211ENST00000576601 MST1RQ04912 1400 aa21.68■■□□□ 1.06
CIITA-211ENST00000576601 NALCNQ8IZF0 1738 aa21.68■■□□□ 1.06
CIITA-211ENST00000576601 PPP1R15AO75807 674 aaPredicted RBP21.67■■□□□ 1.06
CIITA-211ENST00000576601 ATF3P18847 181 aa21.66■■□□□ 1.06
CIITA-211ENST00000576601 LAMC1P11047 1609 aa21.66■■□□□ 1.06
CIITA-211ENST00000576601 CHIC2Q9UKJ5 165 aa21.65■■□□□ 1.06
CIITA-211ENST00000576601 SETBP1Q9Y6X0 1596 aa21.64■■□□□ 1.05
CIITA-211ENST00000576601 PNPLA6Q8IY17 1366 aa21.63■■□□□ 1.05
CIITA-211ENST00000576601 RBM6P78332 1123 aaKnown RBP21.61■■□□□ 1.05
CIITA-211ENST00000576601 IQGAP3Q86VI3 1631 aa21.61■■□□□ 1.05
CIITA-211ENST00000576601 NUTM2DQ5VT03 806 aaPredicted RBP21.6■■□□□ 1.05
CIITA-211ENST00000576601 ANKRD50Q9ULJ7 1429 aa21.6■■□□□ 1.05
CIITA-211ENST00000576601 C8orf37Q96NL8 207 aa21.59■■□□□ 1.05
CIITA-211ENST00000576601 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.58■■□□□ 1.05
CIITA-211ENST00000576601 QTRT2Q9H974 415 aaKnown RBP21.58■■□□□ 1.05
CIITA-211ENST00000576601 HDGFP51858 240 aaKnown RBP21.57■■□□□ 1.04
CIITA-211ENST00000576601 AMOTL2Q9Y2J4 779 aa21.57■■□□□ 1.04
CIITA-211ENST00000576601 DDX17Q92841 729 aaKnown RBP21.56■■□□□ 1.04
CIITA-211ENST00000576601 ATAD2Q6PL18 1390 aa21.56■■□□□ 1.04
CIITA-211ENST00000576601 MARF1Q9Y4F3 1742 aaKnown RBP21.55■■□□□ 1.04
CIITA-211ENST00000576601 ADGRL3Q9HAR2 1447 aa21.55■■□□□ 1.04
CIITA-211ENST00000576601 COL22A1Q8NFW1 1626 aaPredicted RBP21.54■■□□□ 1.04
CIITA-211ENST00000576601 LRRC59Q96AG4 307 aaKnown RBP21.53■■□□□ 1.04
CIITA-211ENST00000576601 SPHKAPQ2M3C7 1700 aa21.52■■□□□ 1.03
CIITA-211ENST00000576601 CHGAP10645 457 aaKnown RBP21.5■■□□□ 1.03
CIITA-211ENST00000576601 METP08581 1390 aa21.48■■□□□ 1.03
CIITA-211ENST00000576601 ATRNO75882 1429 aa21.48■■□□□ 1.03
CIITA-211ENST00000576601 C1orf167Q5SNV9 1468 aa21.46■■□□□ 1.03
CIITA-211ENST00000576601 ADAMTS2O95450 1211 aa21.46■■□□□ 1.03
CIITA-211ENST00000576601 NGLY1Q96IV0 654 aa21.45■■□□□ 1.02
CIITA-211ENST00000576601 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.45■■□□□ 1.02
CIITA-211ENST00000576601 BRWD3Q6RI45 1802 aa21.45■■□□□ 1.02
CIITA-211ENST00000576601 APLP2Q06481 763 aa21.44■■□□□ 1.02
CIITA-211ENST00000576601 ZRANB1Q9UGI0 708 aa21.44■■□□□ 1.02
CIITA-211ENST00000576601 PTCH1Q13635 1447 aa21.44■■□□□ 1.02
CIITA-211ENST00000576601 LRP5O75197 1615 aa21.44■■□□□ 1.02
CIITA-211ENST00000576601 NEXMIFQ5QGS0 1516 aa21.43■■□□□ 1.02
CIITA-211ENST00000576601 MYOM2P54296 1465 aa21.41■■□□□ 1.02
CIITA-211ENST00000576601 SOS2Q07890 1332 aaPredicted RBP21.41■■□□□ 1.02
CIITA-211ENST00000576601 FNBP4Q8N3X1 1017 aaPredicted RBP21.41■■□□□ 1.02
CIITA-211ENST00000576601 USP21Q9UK80 565 aa21.41■■□□□ 1.02
CIITA-211ENST00000576601 TRPC5Q9UL62 973 aaPredicted RBP21.4■■□□□ 1.02
CIITA-211ENST00000576601 CLTCL1P53675 1640 aa21.39■■□□□ 1.01
CIITA-211ENST00000576601 BCL9LQ86UU0 1499 aa21.39■■□□□ 1.01
CIITA-211ENST00000576601 GLI3P10071 1580 aa21.37■■□□□ 1.01
CIITA-211ENST00000576601 KIF1BO60333 1816 aa21.35■■□□□ 1.01
CIITA-211ENST00000576601 PRAG1Q86YV5 1406 aa21.34■■□□□ 1.01
CIITA-211ENST00000576601 ORAI2Q96SN7 254 aa21.33■■□□□ 1.01
CIITA-211ENST00000576601 PXDNQ92626 1479 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms