RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PIK3C2BO00750 1634 aa26.72■■□□□ 1.87
VPS53-218ENST00000575207 CADPS2Q86UW7 1296 aa26.71■■□□□ 1.87
VPS53-218ENST00000575207 LRP5O75197 1615 aa26.71■■□□□ 1.87
VPS53-218ENST00000575207 MROH1Q8NDA8 1641 aa26.71■■□□□ 1.87
VPS53-218ENST00000575207 STAG3Q9UJ98 1225 aa26.7■■□□□ 1.86
VPS53-218ENST00000575207 MTUS2Q5JR59 1369 aa26.7■■□□□ 1.86
VPS53-218ENST00000575207 SETD5Q9C0A6 1442 aa26.69■■□□□ 1.86
VPS53-218ENST00000575207 EFCAB6Q5THR3 1501 aa26.69■■□□□ 1.86
VPS53-218ENST00000575207 CEP152O94986 1710 aa26.67■■□□□ 1.86
VPS53-218ENST00000575207 BRINP3Q76B58 766 aa26.66■■□□□ 1.86
VPS53-218ENST00000575207 C19orf44Q9H6X5 657 aa26.65■■□□□ 1.86
VPS53-218ENST00000575207 EIF2AK4Q9P2K8 1649 aaKnown RBP26.65■■□□□ 1.86
VPS53-218ENST00000575207 TSPY4P0CV99 314 aa26.64■■□□□ 1.86
VPS53-218ENST00000575207 TSPY10P0CW01 314 aa26.64■■□□□ 1.86
VPS53-218ENST00000575207 MAST1Q9Y2H9 1570 aa26.63■■□□□ 1.85
VPS53-218ENST00000575207 CHD2O14647 1828 aaKnown RBP26.63■■□□□ 1.85
VPS53-218ENST00000575207 ATF3P18847 181 aa26.62■■□□□ 1.85
VPS53-218ENST00000575207 IDI1Q13907 227 aa26.61■■□□□ 1.85
VPS53-218ENST00000575207 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.6■■□□□ 1.85
VPS53-218ENST00000575207 C14orf37Q86TY3 774 aa26.6■■□□□ 1.85
VPS53-218ENST00000575207 LRRC59Q96AG4 307 aaKnown RBP26.59■■□□□ 1.85
VPS53-218ENST00000575207 ARHGEF5Q12774 1597 aa26.58■■□□□ 1.85
VPS53-218ENST00000575207 CEP162Q5TB80 1403 aa26.57■■□□□ 1.84
VPS53-218ENST00000575207 BCANQ96GW7 911 aa26.57■■□□□ 1.84
VPS53-218ENST00000575207 TRPC5Q9UL62 973 aaPredicted RBP26.56■■□□□ 1.84
VPS53-218ENST00000575207 PNPLA6Q8IY17 1366 aa26.54■■□□□ 1.84
VPS53-218ENST00000575207 USP21Q9UK80 565 aa26.52■■□□□ 1.84
VPS53-218ENST00000575207 ASXL1Q8IXJ9 1541 aa26.51■■□□□ 1.83
VPS53-218ENST00000575207 EHBP1L1Q8N3D4 1523 aa26.5■■□□□ 1.83
VPS53-218ENST00000575207 PLEKHG1Q9ULL1 1385 aa26.5■■□□□ 1.83
VPS53-218ENST00000575207 TBX22Q9Y458 520 aa26.5■■□□□ 1.83
VPS53-218ENST00000575207 NHSL1Q5SYE7 1610 aa26.48■■□□□ 1.83
VPS53-218ENST00000575207 IFFO2Q5TF58 517 aa26.48■■□□□ 1.83
VPS53-218ENST00000575207 FNBP4Q8N3X1 1017 aaPredicted RBP26.48■■□□□ 1.83
VPS53-218ENST00000575207 ATRNO75882 1429 aa26.48■■□□□ 1.83
VPS53-218ENST00000575207 BLMP54132 1417 aaPredicted RBP26.48■■□□□ 1.83
VPS53-218ENST00000575207 ADAMTS2O95450 1211 aa26.47■■□□□ 1.83
VPS53-218ENST00000575207 ADGRB3O60242 1522 aa26.45■■□□□ 1.83
VPS53-218ENST00000575207 DCCP43146 1447 aa26.45■■□□□ 1.82
VPS53-218ENST00000575207 ZFYVE9O95405 1425 aa26.43■■□□□ 1.82
VPS53-218ENST00000575207 DEFB132Q7Z7B7 95 aa26.43■■□□□ 1.82
VPS53-218ENST00000575207 YY1P25490 414 aa26.42■■□□□ 1.82
VPS53-218ENST00000575207 HRCP23327 699 aa26.4■■□□□ 1.82
VPS53-218ENST00000575207 DUOX2Q9NRD8 1548 aa26.39■■□□□ 1.82
VPS53-218ENST00000575207 MST1RQ04912 1400 aa26.39■■□□□ 1.81
VPS53-218ENST00000575207 PIK3R4Q99570 1358 aa26.38■■□□□ 1.81
VPS53-218ENST00000575207 SLC52A1Q9NWF4 448 aa26.38■■□□□ 1.81
VPS53-218ENST00000575207 NOS1P29475 1434 aa26.38■■□□□ 1.81
VPS53-218ENST00000575207 BCL9LQ86UU0 1499 aa26.36■■□□□ 1.81
VPS53-218ENST00000575207 HDGFP51858 240 aaKnown RBP26.35■■□□□ 1.81
VPS53-218ENST00000575207 PTCH1Q13635 1447 aa26.35■■□□□ 1.81
VPS53-218ENST00000575207 DDX17Q92841 729 aaKnown RBP26.35■■□□□ 1.81
VPS53-218ENST00000575207 PPP1R15AO75807 674 aaPredicted RBP26.34■■□□□ 1.81
VPS53-218ENST00000575207 ADAMTS13Q76LX8 1427 aa26.33■■□□□ 1.81
VPS53-218ENST00000575207 RIMS2Q9UQ26 1411 aa26.31■■□□□ 1.8
VPS53-218ENST00000575207 LMTK2Q8IWU2 1503 aa26.31■■□□□ 1.8
VPS53-218ENST00000575207 PSDA5PKW4 1024 aaPredicted RBP26.31■■□□□ 1.8
VPS53-218ENST00000575207 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.3■■□□□ 1.8
VPS53-218ENST00000575207 SF3B2Q13435 895 aaKnown RBP26.29■■□□□ 1.8
VPS53-218ENST00000575207 GJD4Q96KN9 370 aaPredicted RBP26.29■■□□□ 1.8
VPS53-218ENST00000575207 ERBINQ96RT1 1412 aa26.29■■□□□ 1.8
VPS53-218ENST00000575207 KANK1Q14678 1352 aa26.28■■□□□ 1.8
VPS53-218ENST00000575207 AMOTL2Q9Y2J4 779 aa26.27■■□□□ 1.8
VPS53-218ENST00000575207 UNC13BO14795 1591 aa26.24■■□□□ 1.79
VPS53-218ENST00000575207 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.23■■□□□ 1.79
VPS53-218ENST00000575207 PTPRUQ92729 1446 aa26.22■■□□□ 1.79
VPS53-218ENST00000575207 KIF15Q9NS87 1388 aa26.22■■□□□ 1.79
VPS53-218ENST00000575207 SOS2Q07890 1332 aaPredicted RBP26.21■■□□□ 1.79
VPS53-218ENST00000575207 TRPM2O94759 1503 aa26.2■■□□□ 1.79
VPS53-218ENST00000575207 LAMC1P11047 1609 aa26.19■■□□□ 1.78
VPS53-218ENST00000575207 MYO5BQ9ULV0 1848 aa26.18■■□□□ 1.78
VPS53-218ENST00000575207 SPHKAPQ2M3C7 1700 aa26.17■■□□□ 1.78
VPS53-218ENST00000575207 TMEM131LA2VDJ0 1609 aa26.14■■□□□ 1.78
VPS53-218ENST00000575207 COL22A1Q8NFW1 1626 aaPredicted RBP26.14■■□□□ 1.77
VPS53-218ENST00000575207 MYOM2P54296 1465 aa26.13■■□□□ 1.77
VPS53-218ENST00000575207 RALGAPBQ86X10 1494 aa26.12■■□□□ 1.77
VPS53-218ENST00000575207 RRP7BPQ9NSQ0 103 aa26.12■■□□□ 1.77
VPS53-218ENST00000575207 GLI3P10071 1580 aa26.12■■□□□ 1.77
VPS53-218ENST00000575207 BAG6P46379 1132 aa26.11■■□□□ 1.77
VPS53-218ENST00000575207 GCC2Q8IWJ2 1684 aa26.11■■□□□ 1.77
VPS53-218ENST00000575207 BRWD3Q6RI45 1802 aa26.1■■□□□ 1.77
VPS53-218ENST00000575207 ADGRL3Q9HAR2 1447 aa26.1■■□□□ 1.77
VPS53-218ENST00000575207 C1orf167Q5SNV9 1468 aa26.1■■□□□ 1.77
VPS53-218ENST00000575207 XRN1Q8IZH2 1706 aaKnown RBP26.09■■□□□ 1.77
VPS53-218ENST00000575207 MYOM3Q5VTT5 1437 aa26.09■■□□□ 1.77
VPS53-218ENST00000575207 RPRD2Q5VT52 1461 aaKnown RBP26.08■■□□□ 1.77
VPS53-218ENST00000575207 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.08■■□□□ 1.76
VPS53-218ENST00000575207 R3HDM1Q15032 1099 aaKnown RBP26.07■■□□□ 1.76
VPS53-218ENST00000575207 UNC5CLQ8IV45 518 aa26.06■■□□□ 1.76
VPS53-218ENST00000575207 SEPT12Q8IYM1 358 aa26.05■■□□□ 1.76
VPS53-218ENST00000575207 MARF1Q9Y4F3 1742 aaKnown RBP26.03■■□□□ 1.76
VPS53-218ENST00000575207 SENP3-EIF4A1A0A087X0R7 540 aa26.03■■□□□ 1.76
VPS53-218ENST00000575207 ONECUT3O60422 494 aaPredicted RBP26.01■■□□□ 1.75
VPS53-218ENST00000575207 ORAI2Q96SN7 254 aa26.01■■□□□ 1.75
VPS53-218ENST00000575207 SLIT2O94813 1529 aa26■■□□□ 1.75
VPS53-218ENST00000575207 KRT27Q7Z3Y8 459 aa26■■□□□ 1.75
VPS53-218ENST00000575207 CHGAP10645 457 aaKnown RBP25.97■■□□□ 1.75
VPS53-218ENST00000575207 NALCNQ8IZF0 1738 aa25.97■■□□□ 1.75
VPS53-218ENST00000575207 ABCC5O15440 1437 aa25.97■■□□□ 1.75
VPS53-218ENST00000575207 EN1Q05925 392 aaPredicted RBP25.96■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms