RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 MCM4P33991 863 aa18.44■□□□□ 0.54
SMG6-215ENST00000574501 TRMT2AQ8IZ69 625 aaKnown RBP18.44■□□□□ 0.54
SMG6-215ENST00000574501 KNSTRNQ9Y448 316 aa18.44■□□□□ 0.54
SMG6-215ENST00000574501 APAF1O14727 1248 aa18.44■□□□□ 0.54
SMG6-215ENST00000574501 CLUAP1Q96AJ1 413 aa18.43■□□□□ 0.54
SMG6-215ENST00000574501 UPF2Q9HAU5 1272 aaKnown RBP18.43■□□□□ 0.54
SMG6-215ENST00000574501 NKTRP30414 1462 aaKnown RBP18.42■□□□□ 0.54
SMG6-215ENST00000574501 RAPGEF6Q8TEU7 1601 aa18.42■□□□□ 0.54
SMG6-215ENST00000574501 CANXP27824 592 aaKnown RBP18.42■□□□□ 0.54
SMG6-215ENST00000574501 TBC1D32Q96NH3 1257 aa18.42■□□□□ 0.54
SMG6-215ENST00000574501 DMRT2Q9Y5R5 561 aa18.42■□□□□ 0.54
SMG6-215ENST00000574501 C9orf84Q5VXU9 1444 aa18.42■□□□□ 0.54
SMG6-215ENST00000574501 GRIN2AQ12879 1464 aa18.42■□□□□ 0.54
SMG6-215ENST00000574501 ITSN2Q9NZM3 1697 aa18.42■□□□□ 0.54
SMG6-215ENST00000574501 TSPY4P0CV99 314 aa18.41■□□□□ 0.54
SMG6-215ENST00000574501 TSPY10P0CW01 314 aa18.41■□□□□ 0.54
SMG6-215ENST00000574501 CCDC144AA2RUR9 1427 aa18.4■□□□□ 0.54
SMG6-215ENST00000574501 DISP1Q96F81 1524 aa18.4■□□□□ 0.54
SMG6-215ENST00000574501 CGNL1Q0VF96 1302 aa18.4■□□□□ 0.54
SMG6-215ENST00000574501 GPRASP1Q5JY77 1395 aa18.4■□□□□ 0.54
SMG6-215ENST00000574501 MAGI2Q86UL8 1455 aa18.4■□□□□ 0.54
SMG6-215ENST00000574501 TRAK2O60296 914 aa18.4■□□□□ 0.54
SMG6-215ENST00000574501 KIAA0556O60303 1618 aa18.38■□□□□ 0.53
SMG6-215ENST00000574501 AMER1Q5JTC6 1135 aaPredicted RBP18.38■□□□□ 0.53
SMG6-215ENST00000574501 ERBB4Q15303 1308 aa18.37■□□□□ 0.53
SMG6-215ENST00000574501 PRDM15P57071 1507 aaPredicted RBP18.37■□□□□ 0.53
SMG6-215ENST00000574501 E9PSI1 815 aa18.37■□□□□ 0.53
SMG6-215ENST00000574501 MRE11P49959 708 aa18.37■□□□□ 0.53
SMG6-215ENST00000574501 HNRNPMP52272 730 aaKnown RBP eCLIP18.37■□□□□ 0.53
SMG6-215ENST00000574501 PDE3AQ14432 1141 aa18.37■□□□□ 0.53
SMG6-215ENST00000574501 A2MP01023 1474 aa18.36■□□□□ 0.53
SMG6-215ENST00000574501 MYH16Q9H6N6 1097 aa18.36■□□□□ 0.53
SMG6-215ENST00000574501 PTPRGP23470 1445 aa18.36■□□□□ 0.53
SMG6-215ENST00000574501 ESPNB1AK53 854 aa18.35■□□□□ 0.53
SMG6-215ENST00000574501 CENPJQ9HC77 1338 aaPredicted RBP18.35■□□□□ 0.53
SMG6-215ENST00000574501 GRPEL1Q9HAV7 217 aa18.34■□□□□ 0.53
SMG6-215ENST00000574501 PDZRN3Q9UPQ7 1066 aa18.34■□□□□ 0.53
SMG6-215ENST00000574501 PCDHB15Q9Y5E8 787 aa18.34■□□□□ 0.53
SMG6-215ENST00000574501 CHD1O14646 1710 aa18.33■□□□□ 0.53
SMG6-215ENST00000574501 WDR7Q9Y4E6 1490 aa18.33■□□□□ 0.53
SMG6-215ENST00000574501 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.33■□□□□ 0.53
SMG6-215ENST00000574501 PLB1Q6P1J6 1458 aa18.33■□□□□ 0.52
SMG6-215ENST00000574501 CLASP1Q7Z460 1538 aa18.33■□□□□ 0.52
SMG6-215ENST00000574501 FAM135AQ9P2D6 1515 aa18.33■□□□□ 0.52
SMG6-215ENST00000574501 CHMP5Q9NZZ3 219 aa18.32■□□□□ 0.52
SMG6-215ENST00000574501 TNNQ9UQP3 1299 aa18.32■□□□□ 0.52
SMG6-215ENST00000574501 CDC42BPAQ5VT25 1732 aa18.32■□□□□ 0.52
SMG6-215ENST00000574501 PMFBP1Q8TBY8 1022 aa18.3■□□□□ 0.52
SMG6-215ENST00000574501 NUP160Q12769 1436 aa18.3■□□□□ 0.52
SMG6-215ENST00000574501 SHANK2Q9UPX8 1470 aa18.29■□□□□ 0.52
SMG6-215ENST00000574501 MFAP1P55081 439 aaKnown RBP18.29■□□□□ 0.52
SMG6-215ENST00000574501 PLA2R1Q13018 1463 aa18.29■□□□□ 0.52
SMG6-215ENST00000574501 RLBP1P12271 317 aa18.29■□□□□ 0.52
SMG6-215ENST00000574501 ADCY10Q96PN6 1610 aa18.28■□□□□ 0.52
SMG6-215ENST00000574501 TRIM44Q96DX7 344 aaPredicted RBP18.28■□□□□ 0.52
SMG6-215ENST00000574501 C22orf23Q9BZE7 217 aa18.28■□□□□ 0.52
SMG6-215ENST00000574501 BCL2L13Q9BXK5 485 aa18.28■□□□□ 0.52
SMG6-215ENST00000574501 NEUROD2Q15784 382 aa18.27■□□□□ 0.52
SMG6-215ENST00000574501 LAMC1P11047 1609 aa18.27■□□□□ 0.51
SMG6-215ENST00000574501 PIK3C2GO75747 1445 aa18.27■□□□□ 0.51
SMG6-215ENST00000574501 OSCARQ8IYS5 282 aa18.26■□□□□ 0.51
SMG6-215ENST00000574501 ABCC10Q5T3U5 1492 aa18.25■□□□□ 0.51
SMG6-215ENST00000574501 GAS2L3Q86XJ1 694 aa18.25■□□□□ 0.51
SMG6-215ENST00000574501 WWC1Q8IX03 1113 aa18.25■□□□□ 0.51
SMG6-215ENST00000574501 PLEKHD1A6NEE1 506 aa18.24■□□□□ 0.51
SMG6-215ENST00000574501 JPH4Q96JJ6 628 aa18.24■□□□□ 0.51
SMG6-215ENST00000574501 NINLQ9Y2I6 1382 aa18.24■□□□□ 0.51
SMG6-215ENST00000574501 DDX11L8A8MPP1 907 aa18.23■□□□□ 0.51
SMG6-215ENST00000574501 RARSP54136 660 aaKnown RBP18.23■□□□□ 0.51
SMG6-215ENST00000574501 ASXL1Q8IXJ9 1541 aa18.23■□□□□ 0.51
SMG6-215ENST00000574501 ABCC2Q92887 1545 aa18.23■□□□□ 0.51
SMG6-215ENST00000574501 RRP7AQ9Y3A4 280 aaKnown RBP18.23■□□□□ 0.51
SMG6-215ENST00000574501 MYO5CQ9NQX4 1742 aa18.23■□□□□ 0.51
SMG6-215ENST00000574501 ZNF692Q9BU19 519 aaPredicted RBP18.22■□□□□ 0.51
SMG6-215ENST00000574501 RWDD1Q9H446 243 aaPredicted RBP18.22■□□□□ 0.51
SMG6-215ENST00000574501 HSCBQ8IWL3 235 aa18.21■□□□□ 0.51
SMG6-215ENST00000574501 RTEL1-TNFRSF6BF6WH68 1400 aa18.21■□□□□ 0.5
SMG6-215ENST00000574501 CCDC141Q6ZP82 1450 aa18.2■□□□□ 0.5
SMG6-215ENST00000574501 EIF2AK4Q9P2K8 1649 aaKnown RBP18.2■□□□□ 0.5
SMG6-215ENST00000574501 TPM2P07951 284 aa18.19■□□□□ 0.5
SMG6-215ENST00000574501 KIAA1211Q6ZU35 1233 aa18.19■□□□□ 0.5
SMG6-215ENST00000574501 TNPO1Q92973 898 aaKnown RBP18.18■□□□□ 0.5
SMG6-215ENST00000574501 PDCL3Q9H2J4 239 aa18.18■□□□□ 0.5
SMG6-215ENST00000574501 CDCA8Q53HL2 280 aa18.18■□□□□ 0.5
SMG6-215ENST00000574501 ZMYM3Q14202 1370 aa18.18■□□□□ 0.5
SMG6-215ENST00000574501 ISY1Q9ULR0 285 aaKnown RBP18.17■□□□□ 0.5
SMG6-215ENST00000574501 SYNMO15061 1565 aa18.15■□□□□ 0.5
SMG6-215ENST00000574501 PLXNC1O60486 1568 aa18.15■□□□□ 0.5
SMG6-215ENST00000574501 RBM10P98175 930 aaKnown RBP18.14■□□□□ 0.49
SMG6-215ENST00000574501 AAMPQ13685 434 aa18.14■□□□□ 0.49
SMG6-215ENST00000574501 FOXD4L1Q9NU39 408 aa18.14■□□□□ 0.49
SMG6-215ENST00000574501 DDIT3P35638 169 aa18.13■□□□□ 0.49
SMG6-215ENST00000574501 NGEFQ8N5V2 710 aa18.13■□□□□ 0.49
SMG6-215ENST00000574501 RNF17Q9BXT8 1623 aaKnown RBP18.12■□□□□ 0.49
SMG6-215ENST00000574501 NPC1L1Q9UHC9 1359 aa18.12■□□□□ 0.49
SMG6-215ENST00000574501 TNNT2P45379 298 aaPredicted RBP18.11■□□□□ 0.49
SMG6-215ENST00000574501 MVPQ14764 893 aaKnown RBP18.11■□□□□ 0.49
SMG6-215ENST00000574501 CARD14Q9BXL6 1004 aa18.11■□□□□ 0.49
SMG6-215ENST00000574501 HSP90AB1P08238 724 aaKnown RBP18.1■□□□□ 0.49
SMG6-215ENST00000574501 TCP11L2Q8N4U5 519 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms