RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.47■□□□□ 0.87
NUP88-207ENST00000573584 STAC3Q96MF2 364 aa20.47■□□□□ 0.87
NUP88-207ENST00000573584 SCAF11Q99590 1463 aaKnown RBP20.46■□□□□ 0.87
NUP88-207ENST00000573584 PPM1GO15355 546 aaPredicted RBP20.46■□□□□ 0.87
NUP88-207ENST00000573584 SPAG9O60271 1321 aaKnown RBP20.45■□□□□ 0.86
NUP88-207ENST00000573584 SHROOM2Q13796 1616 aa20.44■□□□□ 0.86
NUP88-207ENST00000573584 SLFN5Q08AF3 891 aa20.44■□□□□ 0.86
NUP88-207ENST00000573584 IQGAP1P46940 1657 aa20.44■□□□□ 0.86
NUP88-207ENST00000573584 ERCC6L2Q5T890 1561 aa20.44■□□□□ 0.86
NUP88-207ENST00000573584 ASXL1Q8IXJ9 1541 aa20.44■□□□□ 0.86
NUP88-207ENST00000573584 CHD1O14646 1710 aa20.44■□□□□ 0.86
NUP88-207ENST00000573584 SCAPERQ9BY12 1400 aa20.43■□□□□ 0.86
NUP88-207ENST00000573584 SYNMO15061 1565 aa20.43■□□□□ 0.86
NUP88-207ENST00000573584 PIK3C2GO75747 1445 aa20.43■□□□□ 0.86
NUP88-207ENST00000573584 CCDC146Q8IYE0 955 aa20.43■□□□□ 0.86
NUP88-207ENST00000573584 AFAP1Q8N556 730 aa20.43■□□□□ 0.86
NUP88-207ENST00000573584 TRPM2O94759 1503 aa20.42■□□□□ 0.86
NUP88-207ENST00000573584 ABCC1P33527 1531 aa20.42■□□□□ 0.86
NUP88-207ENST00000573584 NPC1L1Q9UHC9 1359 aa20.4■□□□□ 0.86
NUP88-207ENST00000573584 PTPRTO14522 1441 aa20.4■□□□□ 0.86
NUP88-207ENST00000573584 EIF3AQ14152 1382 aaKnown RBP20.4■□□□□ 0.86
NUP88-207ENST00000573584 TRMT2AQ8IZ69 625 aaKnown RBP20.39■□□□□ 0.85
NUP88-207ENST00000573584 APAF1O14727 1248 aa20.38■□□□□ 0.85
NUP88-207ENST00000573584 FAM161AQ3B820 660 aa20.38■□□□□ 0.85
NUP88-207ENST00000573584 SPHKAPQ2M3C7 1700 aa20.37■□□□□ 0.85
NUP88-207ENST00000573584 CLASP1Q7Z460 1538 aa20.37■□□□□ 0.85
NUP88-207ENST00000573584 RTEL1-TNFRSF6BF6WH68 1400 aa20.37■□□□□ 0.85
NUP88-207ENST00000573584 SPINK5Q9NQ38 1064 aaPredicted RBP20.37■□□□□ 0.85
NUP88-207ENST00000573584 DAXXQ9UER7 740 aaPredicted RBP20.36■□□□□ 0.85
NUP88-207ENST00000573584 CLTCL1P53675 1640 aa20.35■□□□□ 0.85
NUP88-207ENST00000573584 C8orf34Q49A92 452 aa20.35■□□□□ 0.85
NUP88-207ENST00000573584 SLC4A3P48751 1232 aa20.34■□□□□ 0.85
NUP88-207ENST00000573584 CEP152O94986 1710 aa20.34■□□□□ 0.85
NUP88-207ENST00000573584 ZCCHC11Q5TAX3 1644 aaKnown RBP20.34■□□□□ 0.85
NUP88-207ENST00000573584 NKTRP30414 1462 aaKnown RBP20.33■□□□□ 0.85
NUP88-207ENST00000573584 KANK1Q14678 1352 aa20.33■□□□□ 0.85
NUP88-207ENST00000573584 SLC24A1O60721 1099 aa20.33■□□□□ 0.85
NUP88-207ENST00000573584 BCAR3O75815 825 aa20.33■□□□□ 0.85
NUP88-207ENST00000573584 RGS3P49796 1198 aa20.33■□□□□ 0.85
NUP88-207ENST00000573584 CFAP70Q5T0N1 1121 aa20.33■□□□□ 0.85
NUP88-207ENST00000573584 E9PSI1 815 aa20.33■□□□□ 0.84
NUP88-207ENST00000573584 MYOM1P52179 1685 aa20.32■□□□□ 0.84
NUP88-207ENST00000573584 ZFYVE16Q7Z3T8 1539 aa20.31■□□□□ 0.84
NUP88-207ENST00000573584 KIF3BO15066 747 aa20.3■□□□□ 0.84
NUP88-207ENST00000573584 CARD14Q9BXL6 1004 aa20.3■□□□□ 0.84
NUP88-207ENST00000573584 UHRF1BP1LA0JNW5 1464 aa20.29■□□□□ 0.84
NUP88-207ENST00000573584 KDM5AP29375 1690 aaKnown RBP20.29■□□□□ 0.84
NUP88-207ENST00000573584 NFKBIBQ15653 356 aa20.28■□□□□ 0.84
NUP88-207ENST00000573584 TET3O43151 1660 aa20.28■□□□□ 0.84
NUP88-207ENST00000573584 ADGRF5Q8IZF2 1346 aa20.28■□□□□ 0.84
NUP88-207ENST00000573584 NGEFQ8N5V2 710 aa20.27■□□□□ 0.84
NUP88-207ENST00000573584 DMRT2Q9Y5R5 561 aa20.27■□□□□ 0.84
NUP88-207ENST00000573584 ERVK-7P63135 1459 aa20.27■□□□□ 0.84
NUP88-207ENST00000573584 DEPDC5O75140 1603 aa20.27■□□□□ 0.84
NUP88-207ENST00000573584 KIAA1210Q9ULL0 1709 aa20.25■□□□□ 0.83
NUP88-207ENST00000573584 IL27Q8NEV9 243 aa20.25■□□□□ 0.83
NUP88-207ENST00000573584 ARAP3Q8WWN8 1544 aa20.24■□□□□ 0.83
NUP88-207ENST00000573584 IGHDP01880 384 aa20.23■□□□□ 0.83
NUP88-207ENST00000573584 PDE3AQ14432 1141 aa20.23■□□□□ 0.83
NUP88-207ENST00000573584 VWDEQ8N2E2 1590 aa20.22■□□□□ 0.83
NUP88-207ENST00000573584 CGNL1Q0VF96 1302 aa20.22■□□□□ 0.83
NUP88-207ENST00000573584 CENPJQ9HC77 1338 aaPredicted RBP20.22■□□□□ 0.83
NUP88-207ENST00000573584 GSE1Q14687 1217 aa20.22■□□□□ 0.83
NUP88-207ENST00000573584 WWC1Q8IX03 1113 aa20.22■□□□□ 0.83
NUP88-207ENST00000573584 ATP7AQ04656 1500 aa20.22■□□□□ 0.83
NUP88-207ENST00000573584 MYOM2P54296 1465 aa20.21■□□□□ 0.83
NUP88-207ENST00000573584 UGGT1Q9NYU2 1555 aa20.21■□□□□ 0.83
NUP88-207ENST00000573584 MAP3K4Q9Y6R4 1608 aa20.21■□□□□ 0.83
NUP88-207ENST00000573584 CANXP27824 592 aaKnown RBP20.21■□□□□ 0.83
NUP88-207ENST00000573584 NEURL4Q96JN8 1562 aa20.21■□□□□ 0.83
NUP88-207ENST00000573584 POLR3AO14802 1390 aaPredicted RBP20.2■□□□□ 0.82
NUP88-207ENST00000573584 ABCA6Q8N139 1617 aa20.19■□□□□ 0.82
NUP88-207ENST00000573584 FANCAO15360 1455 aa20.19■□□□□ 0.82
NUP88-207ENST00000573584 PANK1Q8TE04 598 aa20.18■□□□□ 0.82
NUP88-207ENST00000573584 CLUAP1Q96AJ1 413 aa20.18■□□□□ 0.82
NUP88-207ENST00000573584 COG6Q9Y2V7 657 aa20.18■□□□□ 0.82
NUP88-207ENST00000573584 NEUROD2Q15784 382 aa20.17■□□□□ 0.82
NUP88-207ENST00000573584 MORC1Q86VD1 984 aa20.17■□□□□ 0.82
NUP88-207ENST00000573584 INO80Q9ULG1 1556 aaPredicted RBP20.17■□□□□ 0.82
NUP88-207ENST00000573584 TNNT2P45379 298 aaPredicted RBP20.16■□□□□ 0.82
NUP88-207ENST00000573584 SBNO2Q9Y2G9 1366 aa20.16■□□□□ 0.82
NUP88-207ENST00000573584 NINLQ9Y2I6 1382 aa20.16■□□□□ 0.82
NUP88-207ENST00000573584 FRAT1Q92837 279 aaPredicted RBP20.16■□□□□ 0.82
NUP88-207ENST00000573584 CHGAP10645 457 aaKnown RBP20.14■□□□□ 0.81
NUP88-207ENST00000573584 RUNDC1Q96C34 613 aa20.14■□□□□ 0.81
NUP88-207ENST00000573584 RTN4Q9NQC3 1192 aaKnown RBP20.14■□□□□ 0.81
NUP88-207ENST00000573584 TRAK1Q9UPV9 953 aa20.14■□□□□ 0.81
NUP88-207ENST00000573584 RRP7AQ9Y3A4 280 aaKnown RBP20.14■□□□□ 0.81
NUP88-207ENST00000573584 NSD3Q9BZ95 1437 aa20.14■□□□□ 0.81
NUP88-207ENST00000573584 SLC12A5Q9H2X9 1139 aa20.13■□□□□ 0.81
NUP88-207ENST00000573584 MAPK8IP3Q9UPT6 1336 aa20.13■□□□□ 0.81
NUP88-207ENST00000573584 ADGRL1O94910 1474 aa20.13■□□□□ 0.81
NUP88-207ENST00000573584 MROH1Q8NDA8 1641 aa20.12■□□□□ 0.81
NUP88-207ENST00000573584 FRAT2O75474 233 aaPredicted RBP20.12■□□□□ 0.81
NUP88-207ENST00000573584 TCP11L2Q8N4U5 519 aa20.12■□□□□ 0.81
NUP88-207ENST00000573584 KIF1BO60333 1816 aa20.11■□□□□ 0.81
NUP88-207ENST00000573584 NRXN1Q9ULB1 1477 aa20.11■□□□□ 0.81
NUP88-207ENST00000573584 NOS1P29475 1434 aa20.11■□□□□ 0.81
NUP88-207ENST00000573584 RARSP54136 660 aaKnown RBP20.11■□□□□ 0.81
NUP88-207ENST00000573584 USP19O94966 1318 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms