RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 KRI1Q8N9T8 703 aaKnown RBP9.6□□□□□ -0.87
NUP88-202ENST00000570937 PTPN5P54829 565 aa9.59□□□□□ -0.87
NUP88-202ENST00000570937 NYAP1Q6ZVC0 841 aa9.59□□□□□ -0.87
NUP88-202ENST00000570937 SLF2Q8IX21 1173 aa9.59□□□□□ -0.87
NUP88-202ENST00000570937 SLC4A3P48751 1232 aa9.58□□□□□ -0.88
NUP88-202ENST00000570937 NECTIN2Q92692 538 aa9.58□□□□□ -0.88
NUP88-202ENST00000570937 HPS5Q9UPZ3 1129 aa9.58□□□□□ -0.88
NUP88-202ENST00000570937 WBP1LQ9NX94 342 aa9.57□□□□□ -0.88
NUP88-202ENST00000570937 DAXXQ9UER7 740 aaPredicted RBP9.57□□□□□ -0.88
NUP88-202ENST00000570937 PPP4CP60510 307 aa9.56□□□□□ -0.88
NUP88-202ENST00000570937 AK7Q96M32 723 aa9.54□□□□□ -0.88
NUP88-202ENST00000570937 RNF40O75150 1001 aa9.53□□□□□ -0.88
NUP88-202ENST00000570937 AMHR2Q16671 573 aa9.53□□□□□ -0.88
NUP88-202ENST00000570937 NLRP7Q8WX94 980 aa9.53□□□□□ -0.88
NUP88-202ENST00000570937 TMUB1Q9BVT8 246 aa9.52□□□□□ -0.89
NUP88-202ENST00000570937 SLC24A3Q9HC58 644 aa9.52□□□□□ -0.89
NUP88-202ENST00000570937 TRIM66O15016 1216 aa9.51□□□□□ -0.89
NUP88-202ENST00000570937 SLC10A3P09131 477 aa9.51□□□□□ -0.89
NUP88-202ENST00000570937 PLA2G2EQ9NZK7 142 aa9.51□□□□□ -0.89
NUP88-202ENST00000570937 CLCN1P35523 988 aa9.5□□□□□ -0.89
NUP88-202ENST00000570937 MDM2Q00987 491 aaPredicted RBP9.5□□□□□ -0.89
NUP88-202ENST00000570937 RSPH4AQ5TD94 716 aa9.5□□□□□ -0.89
NUP88-202ENST00000570937 SULF1Q8IWU6 871 aa9.5□□□□□ -0.89
NUP88-202ENST00000570937 GPCPD1Q9NPB8 672 aa9.5□□□□□ -0.89
NUP88-202ENST00000570937 PRR14Q9BWN1 585 aa9.49□□□□□ -0.89
NUP88-202ENST00000570937 APLP1P51693 650 aa9.48□□□□□ -0.89
NUP88-202ENST00000570937 DDX11L8A8MPP1 907 aa9.46□□□□□ -0.9
NUP88-202ENST00000570937 ITGBL1O95965 494 aaPredicted RBP9.46□□□□□ -0.9
NUP88-202ENST00000570937 KMT5BQ4FZB7 885 aa9.46□□□□□ -0.9
NUP88-202ENST00000570937 REPIN1Q9BWE0 567 aaKnown RBP9.46□□□□□ -0.9
NUP88-202ENST00000570937 FAM217BQ9NTX9 383 aaPredicted RBP9.46□□□□□ -0.9
NUP88-202ENST00000570937 CFHP08603 1231 aa9.45□□□□□ -0.9
NUP88-202ENST00000570937 CD46P15529 392 aa9.45□□□□□ -0.9
NUP88-202ENST00000570937 ACTN4O43707 911 aaKnown RBP9.44□□□□□ -0.9
NUP88-202ENST00000570937 RDH13Q8NBN7 331 aa9.44□□□□□ -0.9
NUP88-202ENST00000570937 GCGRP47871 477 aa9.43□□□□□ -0.9
NUP88-202ENST00000570937 PDE4DQ08499 809 aa9.43□□□□□ -0.9
NUP88-202ENST00000570937 TTLL12Q14166 644 aaPredicted RBP9.43□□□□□ -0.9
NUP88-202ENST00000570937 TPRNQ4KMQ1 711 aa9.43□□□□□ -0.9
NUP88-202ENST00000570937 IFFO2Q5TF58 517 aa9.43□□□□□ -0.9
NUP88-202ENST00000570937 PARP9Q8IXQ6 854 aa9.43□□□□□ -0.9
NUP88-202ENST00000570937 GIGYF2Q6Y7W6 1299 aaKnown RBP9.42□□□□□ -0.9
NUP88-202ENST00000570937 TJAP1Q5JTD0 557 aa9.41□□□□□ -0.9
NUP88-202ENST00000570937 SSTR3P32745 418 aaPredicted RBP9.4□□□□□ -0.9
NUP88-202ENST00000570937 MTRQ99707 1265 aa9.39□□□□□ -0.91
NUP88-202ENST00000570937 IL21Q9HBE4 155 aa9.39□□□□□ -0.91
NUP88-202ENST00000570937 PCDHB3Q9Y5E6 796 aa9.39□□□□□ -0.91
NUP88-202ENST00000570937 KCNC4Q03721 635 aa9.38□□□□□ -0.91
NUP88-202ENST00000570937 FUT2Q10981 343 aa9.36□□□□□ -0.91
NUP88-202ENST00000570937 BLOC1S3Q6QNY0 202 aa9.36□□□□□ -0.91
NUP88-202ENST00000570937 KDM4AO75164 1064 aa9.35□□□□□ -0.91
NUP88-202ENST00000570937 MS4A1P11836 297 aa9.35□□□□□ -0.91
NUP88-202ENST00000570937 ATP6V1AP38606 617 aa9.35□□□□□ -0.91
NUP88-202ENST00000570937 USP46P62068 366 aa9.35□□□□□ -0.91
NUP88-202ENST00000570937 COPS2P61201 443 aa9.34□□□□□ -0.91
NUP88-202ENST00000570937 MORN1Q5T089 497 aa9.34□□□□□ -0.91
NUP88-202ENST00000570937 ZPR1O75312 459 aa9.33□□□□□ -0.92
NUP88-202ENST00000570937 NR1I2O75469 434 aa9.33□□□□□ -0.92
NUP88-202ENST00000570937 GRIPAP1Q4V328 841 aa9.33□□□□□ -0.92
NUP88-202ENST00000570937 ZNF516Q92618 1163 aa9.33□□□□□ -0.92
NUP88-202ENST00000570937 PUS10Q3MIT2 529 aaKnown RBP9.32□□□□□ -0.92
NUP88-202ENST00000570937 BEGAINQ9BUH8 593 aa9.32□□□□□ -0.92
NUP88-202ENST00000570937 NUTM1Q86Y26 1132 aa9.31□□□□□ -0.92
NUP88-202ENST00000570937 SCUBE3Q8IX30 993 aa9.31□□□□□ -0.92
NUP88-202ENST00000570937 HOXA2O43364 376 aa9.3□□□□□ -0.92
NUP88-202ENST00000570937 PRKCSHP14314 528 aaPredicted RBP9.29□□□□□ -0.92
NUP88-202ENST00000570937 DIXDC1Q155Q3 683 aa9.29□□□□□ -0.92
NUP88-202ENST00000570937 SPIRE2Q8WWL2 714 aa9.29□□□□□ -0.92
NUP88-202ENST00000570937 KDM4CQ9H3R0 1056 aa9.29□□□□□ -0.92
NUP88-202ENST00000570937 SLC27A5Q9Y2P5 690 aa9.29□□□□□ -0.92
NUP88-202ENST00000570937 SALL2Q9Y467 1007 aaPredicted RBP9.29□□□□□ -0.92
NUP88-202ENST00000570937 A0A0G2JS52 829 aa9.28□□□□□ -0.92
NUP88-202ENST00000570937 GPBP1L1Q9HC44 474 aaPredicted RBP9.28□□□□□ -0.92
NUP88-202ENST00000570937 THAP11Q96EK4 314 aa9.27□□□□□ -0.93
NUP88-202ENST00000570937 NKX2-3Q8TAU0 364 aa9.26□□□□□ -0.93
NUP88-202ENST00000570937 TBC1D2Q9BYX2 928 aa9.26□□□□□ -0.93
NUP88-202ENST00000570937 ADH1BP00325 375 aa9.25□□□□□ -0.93
NUP88-202ENST00000570937 GJA5P36382 358 aa9.25□□□□□ -0.93
NUP88-202ENST00000570937 BRICD5Q6PL45 260 aa9.25□□□□□ -0.93
NUP88-202ENST00000570937 TLL1O43897 1013 aa9.24□□□□□ -0.93
NUP88-202ENST00000570937 FMNL1O95466 1100 aaPredicted RBP9.24□□□□□ -0.93
NUP88-202ENST00000570937 BRPF1P55201 1214 aaPredicted RBP9.24□□□□□ -0.93
NUP88-202ENST00000570937 Q3C1V9 767 aa9.24□□□□□ -0.93
NUP88-202ENST00000570937 HLA-CQ95604 372 aa9.24□□□□□ -0.93
NUP88-202ENST00000570937 MOXD2PA6NHM9 499 aa9.23□□□□□ -0.93
NUP88-202ENST00000570937 DDRGK1Q96HY6 314 aa9.23□□□□□ -0.93
NUP88-202ENST00000570937 SPSB2Q99619 263 aa9.23□□□□□ -0.93
NUP88-202ENST00000570937 NEUROD2Q15784 382 aa9.22□□□□□ -0.93
NUP88-202ENST00000570937 FAM117AQ9C073 453 aa9.22□□□□□ -0.93
NUP88-202ENST00000570937 FDX1P10109 184 aa9.21□□□□□ -0.94
NUP88-202ENST00000570937 GUCA2AQ02747 115 aa9.21□□□□□ -0.94
NUP88-202ENST00000570937 PPP1R18Q6NYC8 613 aa9.21□□□□□ -0.94
NUP88-202ENST00000570937 RSBN1LQ6PCB5 846 aaPredicted RBP9.21□□□□□ -0.94
NUP88-202ENST00000570937 RNF19BQ6ZMZ0 732 aa9.21□□□□□ -0.94
NUP88-202ENST00000570937 SPTLC1O15269 473 aa9.2□□□□□ -0.94
NUP88-202ENST00000570937 RGS20O76081 388 aa9.2□□□□□ -0.94
NUP88-202ENST00000570937 NDUFV2P19404 249 aa9.2□□□□□ -0.94
NUP88-202ENST00000570937 GGCXP38435 758 aa9.2□□□□□ -0.94
NUP88-202ENST00000570937 MSS51Q4VC12 460 aa9.2□□□□□ -0.94
NUP88-202ENST00000570937 MYSM1Q5VVJ2 828 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms