RNA–Protein interactions for RNA: ENST00000570827.6

USP43-203, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 2

Gene USP43, Length 3,624 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-203ENST00000570827 ITPRIPQ8IWB1 547 aa12.65□□□□□ -0.38
USP43-203ENST00000570827 GPATCH8Q9UKJ3 1502 aaKnown RBP12.65□□□□□ -0.38
USP43-203ENST00000570827 WASHC2CQ9Y4E1 1318 aa12.64□□□□□ -0.39
USP43-203ENST00000570827 U2AF1L5P0DN76 240 aaPredicted RBP12.64□□□□□ -0.39
USP43-203ENST00000570827 U2AF1Q01081 240 aaKnown RBP eCLIP12.64□□□□□ -0.39
USP43-203ENST00000570827 DUSP27Q5VZP5 1158 aa12.64□□□□□ -0.39
USP43-203ENST00000570827 CFAP70Q5T0N1 1121 aa12.64□□□□□ -0.39
USP43-203ENST00000570827 SPATA31E1Q6ZUB1 1445 aa12.64□□□□□ -0.39
USP43-203ENST00000570827 KIF14Q15058 1648 aa12.63□□□□□ -0.39
USP43-203ENST00000570827 MYH16Q9H6N6 1097 aa12.63□□□□□ -0.39
USP43-203ENST00000570827 E9PSI1 815 aa12.62□□□□□ -0.39
USP43-203ENST00000570827 RWDD1Q9H446 243 aaPredicted RBP12.62□□□□□ -0.39
USP43-203ENST00000570827 HSP90AA2PQ14568 343 aaPredicted RBP12.62□□□□□ -0.39
USP43-203ENST00000570827 FAM43AQ8N2R8 423 aa12.62□□□□□ -0.39
USP43-203ENST00000570827 ATP10BO94823 1461 aa12.61□□□□□ -0.39
USP43-203ENST00000570827 SPAG9O60271 1321 aaKnown RBP12.61□□□□□ -0.39
USP43-203ENST00000570827 TEX14Q8IWB6 1497 aa12.61□□□□□ -0.39
USP43-203ENST00000570827 EFCAB2Q5VUJ9 269 aa12.61□□□□□ -0.39
USP43-203ENST00000570827 CGNL1Q0VF96 1302 aa12.61□□□□□ -0.39
USP43-203ENST00000570827 SPINK5Q9NQ38 1064 aaPredicted RBP12.61□□□□□ -0.39
USP43-203ENST00000570827 PDZRN3Q9UPQ7 1066 aa12.61□□□□□ -0.39
USP43-203ENST00000570827 DISP3Q9P2K9 1392 aa12.61□□□□□ -0.39
USP43-203ENST00000570827 MAPK8IP3Q9UPT6 1336 aa12.6□□□□□ -0.39
USP43-203ENST00000570827 PMFBP1Q8TBY8 1022 aa12.6□□□□□ -0.39
USP43-203ENST00000570827 CFAP53Q96M91 514 aa12.6□□□□□ -0.39
USP43-203ENST00000570827 SMC4Q9NTJ3 1288 aa12.6□□□□□ -0.39
USP43-203ENST00000570827 APBB1O00213 710 aa12.6□□□□□ -0.39
USP43-203ENST00000570827 SLFN5Q08AF3 891 aa12.6□□□□□ -0.39
USP43-203ENST00000570827 PANK2Q9BZ23 570 aa12.59□□□□□ -0.39
USP43-203ENST00000570827 DNMT1P26358 1616 aaKnown RBP12.59□□□□□ -0.39
USP43-203ENST00000570827 LRPPRCP42704 1394 aaKnown RBP12.59□□□□□ -0.39
USP43-203ENST00000570827 TNNQ9UQP3 1299 aa12.58□□□□□ -0.39
USP43-203ENST00000570827 PER1O15534 1290 aaPredicted RBP12.58□□□□□ -0.4
USP43-203ENST00000570827 SRPK2P78362 688 aaKnown RBP12.58□□□□□ -0.4
USP43-203ENST00000570827 C9orf84Q5VXU9 1444 aa12.58□□□□□ -0.4
USP43-203ENST00000570827 ELL2O00472 640 aaPredicted RBP12.57□□□□□ -0.4
USP43-203ENST00000570827 PLEKHH1Q9ULM0 1364 aa12.57□□□□□ -0.4
USP43-203ENST00000570827 TRAK2O60296 914 aa12.57□□□□□ -0.4
USP43-203ENST00000570827 NUP160Q12769 1436 aa12.57□□□□□ -0.4
USP43-203ENST00000570827 C22orf23Q9BZE7 217 aa12.56□□□□□ -0.4
USP43-203ENST00000570827 GOLGA6L22H0YM25 854 aa12.56□□□□□ -0.4
USP43-203ENST00000570827 FOXD4L5Q5VV16 416 aaPredicted RBP12.55□□□□□ -0.4
USP43-203ENST00000570827 FOXD4L4Q8WXT5 416 aaPredicted RBP12.55□□□□□ -0.4
USP43-203ENST00000570827 TBC1D2Q9BYX2 928 aa12.55□□□□□ -0.4
USP43-203ENST00000570827 LNPKQ9C0E8 428 aa12.55□□□□□ -0.4
USP43-203ENST00000570827 SLC12A5Q9H2X9 1139 aa12.55□□□□□ -0.4
USP43-203ENST00000570827 RRAGDQ9NQL2 400 aaPredicted RBP12.55□□□□□ -0.4
USP43-203ENST00000570827 TCP11L2Q8N4U5 519 aa12.55□□□□□ -0.4
USP43-203ENST00000570827 DMRT2Q9Y5R5 561 aa12.55□□□□□ -0.4
USP43-203ENST00000570827 TSR2Q969E8 191 aaKnown RBP12.54□□□□□ -0.4
USP43-203ENST00000570827 ERBINQ96RT1 1412 aa12.54□□□□□ -0.4
USP43-203ENST00000570827 FBLN1P23142 703 aa12.54□□□□□ -0.4
USP43-203ENST00000570827 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.54□□□□□ -0.4
USP43-203ENST00000570827 UBE2Q2Q8WVN8 375 aa12.54□□□□□ -0.4
USP43-203ENST00000570827 POLR1AO95602 1720 aaPredicted RBP12.54□□□□□ -0.4
USP43-203ENST00000570827 PZPP20742 1482 aa12.54□□□□□ -0.4
USP43-203ENST00000570827 PARD3Q8TEW0 1356 aa12.54□□□□□ -0.4
USP43-203ENST00000570827 CHMP5Q9NZZ3 219 aa12.53□□□□□ -0.4
USP43-203ENST00000570827 KDM2BQ8NHM5 1336 aa12.53□□□□□ -0.4
USP43-203ENST00000570827 MCM4P33991 863 aa12.52□□□□□ -0.4
USP43-203ENST00000570827 TESK2Q96S53 571 aa12.51□□□□□ -0.41
USP43-203ENST00000570827 MSNP26038 577 aaKnown RBP12.51□□□□□ -0.41
USP43-203ENST00000570827 XRCC6P12956 609 aaKnown RBP eCLIP12.51□□□□□ -0.41
USP43-203ENST00000570827 GBP4Q96PP9 640 aa12.51□□□□□ -0.41
USP43-203ENST00000570827 PCDHB15Q9Y5E8 787 aa12.51□□□□□ -0.41
USP43-203ENST00000570827 ZKSCAN2Q63HK3 967 aa12.5□□□□□ -0.41
USP43-203ENST00000570827 WWC1Q8IX03 1113 aa12.5□□□□□ -0.41
USP43-203ENST00000570827 CABP2Q9NPB3 220 aa12.5□□□□□ -0.41
USP43-203ENST00000570827 RAPGEF3O95398 923 aa12.5□□□□□ -0.41
USP43-203ENST00000570827 PTMAP06454 111 aaKnown RBP12.5□□□□□ -0.41
USP43-203ENST00000570827 FOXD4L6Q3SYB3 417 aaPredicted RBP12.5□□□□□ -0.41
USP43-203ENST00000570827 DNTTIP2Q5QJE6 756 aaKnown RBP12.5□□□□□ -0.41
USP43-203ENST00000570827 ANKRD45Q5TZF3 282 aa12.5□□□□□ -0.41
USP43-203ENST00000570827 FOXD4L3Q6VB84 417 aaPredicted RBP12.5□□□□□ -0.41
USP43-203ENST00000570827 DZIP1LQ8IYY4 767 aaKnown RBP12.5□□□□□ -0.41
USP43-203ENST00000570827 MINK1Q8N4C8 1332 aaPredicted RBP12.5□□□□□ -0.41
USP43-203ENST00000570827 MTHFSP49914 203 aa12.5□□□□□ -0.41
USP43-203ENST00000570827 ARHGAP5Q13017 1502 aa12.49□□□□□ -0.41
USP43-203ENST00000570827 PDE3AQ14432 1141 aa12.49□□□□□ -0.41
USP43-203ENST00000570827 PLCB2Q00722 1185 aa12.49□□□□□ -0.41
USP43-203ENST00000570827 DDX49Q9Y6V7 483 aaKnown RBP12.49□□□□□ -0.41
USP43-203ENST00000570827 ADGRL2O95490 1459 aa12.49□□□□□ -0.41
USP43-203ENST00000570827 MBD5Q9P267 1494 aa12.49□□□□□ -0.41
USP43-203ENST00000570827 CYB5RLQ6IPT4 315 aa12.49□□□□□ -0.41
USP43-203ENST00000570827 PKNOX2Q96KN3 472 aa12.49□□□□□ -0.41
USP43-203ENST00000570827 GGNBP2Q9H3C7 697 aa12.49□□□□□ -0.41
USP43-203ENST00000570827 NOL8Q76FK4 1167 aaKnown RBP12.48□□□□□ -0.41
USP43-203ENST00000570827 RLBP1P12271 317 aa12.48□□□□□ -0.41
USP43-203ENST00000570827 ITSN2Q9NZM3 1697 aa12.48□□□□□ -0.41
USP43-203ENST00000570827 C1orf115Q9H7X2 142 aa12.48□□□□□ -0.41
USP43-203ENST00000570827 RALGAPBQ86X10 1494 aa12.47□□□□□ -0.41
USP43-203ENST00000570827 RBM10P98175 930 aaKnown RBP12.47□□□□□ -0.41
USP43-203ENST00000570827 BCORL1Q5H9F3 1711 aa12.47□□□□□ -0.41
USP43-203ENST00000570827 DDX11L8A8MPP1 907 aa12.47□□□□□ -0.41
USP43-203ENST00000570827 ERCC6L2Q5T890 1561 aa12.46□□□□□ -0.41
USP43-203ENST00000570827 PLEKHH2Q8IVE3 1493 aa12.46□□□□□ -0.41
USP43-203ENST00000570827 MRE11P49959 708 aa12.46□□□□□ -0.41
USP43-203ENST00000570827 EXOSC9Q06265 439 aaKnown RBP12.46□□□□□ -0.41
USP43-203ENST00000570827 AMER1Q5JTC6 1135 aaPredicted RBP12.46□□□□□ -0.41
USP43-203ENST00000570827 RUNDC1Q96C34 613 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms