RNA–Protein interactions for RNA: ENST00000570385.1

CTDNEP1-203, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-203ENST00000570385 PPP1R15AO75807 674 aaPredicted RBP13.24□□□□□ -0.29
CTDNEP1-203ENST00000570385 TET3O43151 1660 aa13.24□□□□□ -0.29
CTDNEP1-203ENST00000570385 KDM5AP29375 1690 aaKnown RBP13.22□□□□□ -0.29
CTDNEP1-203ENST00000570385 MYO5BQ9ULV0 1848 aa13.22□□□□□ -0.29
CTDNEP1-203ENST00000570385 RPRD2Q5VT52 1461 aaKnown RBP13.22□□□□□ -0.29
CTDNEP1-203ENST00000570385 RIMS2Q9UQ26 1411 aa13.22□□□□□ -0.29
CTDNEP1-203ENST00000570385 ZFYVE9O95405 1425 aa13.2□□□□□ -0.3
CTDNEP1-203ENST00000570385 NUP155O75694 1391 aa13.2□□□□□ -0.3
CTDNEP1-203ENST00000570385 GCC2Q8IWJ2 1684 aa13.19□□□□□ -0.3
CTDNEP1-203ENST00000570385 HDGFP51858 240 aaKnown RBP13.19□□□□□ -0.3
CTDNEP1-203ENST00000570385 FAM135BQ49AJ0 1406 aa13.19□□□□□ -0.3
CTDNEP1-203ENST00000570385 PLEKHG1Q9ULL1 1385 aa13.19□□□□□ -0.3
CTDNEP1-203ENST00000570385 UNC13BO14795 1591 aa13.18□□□□□ -0.3
CTDNEP1-203ENST00000570385 ROCK1Q13464 1354 aa13.18□□□□□ -0.3
CTDNEP1-203ENST00000570385 E9PCH4 1651 aa13.18□□□□□ -0.3
CTDNEP1-203ENST00000570385 TMEM131LA2VDJ0 1609 aa13.17□□□□□ -0.3
CTDNEP1-203ENST00000570385 C14orf37Q86TY3 774 aa13.17□□□□□ -0.3
CTDNEP1-203ENST00000570385 RGS17Q9UGC6 210 aaPredicted RBP13.17□□□□□ -0.3
CTDNEP1-203ENST00000570385 MSH6P52701 1360 aa13.17□□□□□ -0.3
CTDNEP1-203ENST00000570385 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.16□□□□□ -0.3
CTDNEP1-203ENST00000570385 SLAIN2Q9P270 581 aa13.16□□□□□ -0.3
CTDNEP1-203ENST00000570385 NKTRP30414 1462 aaKnown RBP13.16□□□□□ -0.3
CTDNEP1-203ENST00000570385 NWD1Q149M9 1564 aa13.15□□□□□ -0.3
CTDNEP1-203ENST00000570385 ROBO1Q9Y6N7 1651 aa13.15□□□□□ -0.3
CTDNEP1-203ENST00000570385 TBX22Q9Y458 520 aa13.15□□□□□ -0.3
CTDNEP1-203ENST00000570385 IQGAP3Q86VI3 1631 aa13.13□□□□□ -0.31
CTDNEP1-203ENST00000570385 CHD2O14647 1828 aaKnown RBP13.13□□□□□ -0.31
CTDNEP1-203ENST00000570385 ADAMTS13Q76LX8 1427 aa13.13□□□□□ -0.31
CTDNEP1-203ENST00000570385 ZNF326Q5BKZ1 582 aaKnown RBP13.11□□□□□ -0.31
CTDNEP1-203ENST00000570385 POTEAQ6S8J7 498 aa13.11□□□□□ -0.31
CTDNEP1-203ENST00000570385 AMOTL2Q9Y2J4 779 aa13.1□□□□□ -0.31
CTDNEP1-203ENST00000570385 PTPRUQ92729 1446 aa13.08□□□□□ -0.32
CTDNEP1-203ENST00000570385 ATF3P18847 181 aa13.08□□□□□ -0.32
CTDNEP1-203ENST00000570385 PHLPP1O60346 1717 aa13.08□□□□□ -0.32
CTDNEP1-203ENST00000570385 C19orf44Q9H6X5 657 aa13.07□□□□□ -0.32
CTDNEP1-203ENST00000570385 CADPS2Q86UW7 1296 aa13.06□□□□□ -0.32
CTDNEP1-203ENST00000570385 PIK3R4Q99570 1358 aa13.06□□□□□ -0.32
CTDNEP1-203ENST00000570385 JCADQ9P266 1359 aa13.06□□□□□ -0.32
CTDNEP1-203ENST00000570385 TRIM52Q96A61 297 aa13.05□□□□□ -0.32
CTDNEP1-203ENST00000570385 SPHKAPQ2M3C7 1700 aa13.05□□□□□ -0.32
CTDNEP1-203ENST00000570385 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.05□□□□□ -0.32
CTDNEP1-203ENST00000570385 NCOA3Q9Y6Q9 1424 aa13.05□□□□□ -0.32
CTDNEP1-203ENST00000570385 TRPM2O94759 1503 aa13.04□□□□□ -0.32
CTDNEP1-203ENST00000570385 DIP2AQ14689 1571 aa13.04□□□□□ -0.32
CTDNEP1-203ENST00000570385 METP08581 1390 aa13.04□□□□□ -0.32
CTDNEP1-203ENST00000570385 BRINP3Q76B58 766 aa13.03□□□□□ -0.32
CTDNEP1-203ENST00000570385 NAIPQ13075 1403 aa13.03□□□□□ -0.32
CTDNEP1-203ENST00000570385 MEX3CQ5U5Q3 659 aaKnown RBP13.02□□□□□ -0.33
CTDNEP1-203ENST00000570385 RRBP1Q9P2E9 1410 aaKnown RBP13.02□□□□□ -0.33
CTDNEP1-203ENST00000570385 COL16A1Q07092 1604 aaPredicted RBP13.02□□□□□ -0.33
CTDNEP1-203ENST00000570385 NRXN3Q9Y4C0 1643 aa13.02□□□□□ -0.33
CTDNEP1-203ENST00000570385 NUTM2BA6NNL0 878 aaPredicted RBP13.01□□□□□ -0.33
CTDNEP1-203ENST00000570385 NUTM2EB1AL46 878 aaPredicted RBP13.01□□□□□ -0.33
CTDNEP1-203ENST00000570385 NUTM2AQ8IVF1 878 aaPredicted RBP13.01□□□□□ -0.33
CTDNEP1-203ENST00000570385 CLTCL1P53675 1640 aa13.01□□□□□ -0.33
CTDNEP1-203ENST00000570385 DDX17Q92841 729 aaKnown RBP13□□□□□ -0.33
CTDNEP1-203ENST00000570385 LRP6O75581 1613 aa12.99□□□□□ -0.33
CTDNEP1-203ENST00000570385 SETBP1Q9Y6X0 1596 aa12.99□□□□□ -0.33
CTDNEP1-203ENST00000570385 SLC4A1APQ9BWU0 796 aaKnown RBP12.99□□□□□ -0.33
CTDNEP1-203ENST00000570385 SPATA31A6Q5VVP1 1343 aa12.98□□□□□ -0.33
CTDNEP1-203ENST00000570385 FOXD1Q16676 465 aa12.98□□□□□ -0.33
CTDNEP1-203ENST00000570385 XRN1Q8IZH2 1706 aaKnown RBP12.98□□□□□ -0.33
CTDNEP1-203ENST00000570385 NEXMIFQ5QGS0 1516 aa12.98□□□□□ -0.33
CTDNEP1-203ENST00000570385 AHDC1Q5TGY3 1603 aaPredicted RBP12.97□□□□□ -0.33
CTDNEP1-203ENST00000570385 MST1RQ04912 1400 aa12.96□□□□□ -0.33
CTDNEP1-203ENST00000570385 SETD1AO15047 1707 aaKnown RBP12.96□□□□□ -0.33
CTDNEP1-203ENST00000570385 KIF1BO60333 1816 aa12.95□□□□□ -0.34
CTDNEP1-203ENST00000570385 ASXL1Q8IXJ9 1541 aa12.95□□□□□ -0.34
CTDNEP1-203ENST00000570385 DCCP43146 1447 aa12.95□□□□□ -0.34
CTDNEP1-203ENST00000570385 VGFO15240 615 aaPredicted RBP12.94□□□□□ -0.34
CTDNEP1-203ENST00000570385 ZNF772Q68DY9 489 aaPredicted RBP12.94□□□□□ -0.34
CTDNEP1-203ENST00000570385 HFM1A2PYH4 1435 aa12.94□□□□□ -0.34
CTDNEP1-203ENST00000570385 ADGRL3Q9HAR2 1447 aa12.94□□□□□ -0.34
CTDNEP1-203ENST00000570385 ROBO2Q9HCK4 1378 aa12.93□□□□□ -0.34
CTDNEP1-203ENST00000570385 SHPRHQ149N8 1683 aa12.93□□□□□ -0.34
CTDNEP1-203ENST00000570385 RGL3Q3MIN7 710 aa12.92□□□□□ -0.34
CTDNEP1-203ENST00000570385 LRRC59Q96AG4 307 aaKnown RBP12.92□□□□□ -0.34
CTDNEP1-203ENST00000570385 NALCNQ8IZF0 1738 aa12.91□□□□□ -0.34
CTDNEP1-203ENST00000570385 ORAI2Q96SN7 254 aa12.91□□□□□ -0.34
CTDNEP1-203ENST00000570385 AFF2P51816 1311 aa12.9□□□□□ -0.34
CTDNEP1-203ENST00000570385 SETD5Q9C0A6 1442 aa12.9□□□□□ -0.34
CTDNEP1-203ENST00000570385 RXRBP28702 533 aa12.9□□□□□ -0.34
CTDNEP1-203ENST00000570385 C8orf37Q96NL8 207 aa12.9□□□□□ -0.34
CTDNEP1-203ENST00000570385 RPGRIP1LQ68CZ1 1315 aa12.89□□□□□ -0.35
CTDNEP1-203ENST00000570385 ADAMTS2O95450 1211 aa12.89□□□□□ -0.35
CTDNEP1-203ENST00000570385 STK26Q9P289 416 aa12.89□□□□□ -0.35
CTDNEP1-203ENST00000570385 C1orf167Q5SNV9 1468 aa12.89□□□□□ -0.35
CTDNEP1-203ENST00000570385 ADGRF5Q8IZF2 1346 aa12.88□□□□□ -0.35
CTDNEP1-203ENST00000570385 NHSL1Q5SYE7 1610 aa12.88□□□□□ -0.35
CTDNEP1-203ENST00000570385 MPHOSPH9Q99550 1183 aa12.88□□□□□ -0.35
CTDNEP1-203ENST00000570385 PNPLA6Q8IY17 1366 aa12.88□□□□□ -0.35
CTDNEP1-203ENST00000570385 NUTM2FA1L443 756 aa12.87□□□□□ -0.35
CTDNEP1-203ENST00000570385 PTCH1Q13635 1447 aa12.87□□□□□ -0.35
CTDNEP1-203ENST00000570385 TMEM132EQ6IEE7 984 aa12.86□□□□□ -0.35
CTDNEP1-203ENST00000570385 WAPLQ7Z5K2 1190 aa12.86□□□□□ -0.35
CTDNEP1-203ENST00000570385 UPF1Q92900 1129 aaKnown RBP eCLIP12.86□□□□□ -0.35
CTDNEP1-203ENST00000570385 PPLO60437 1756 aa12.86□□□□□ -0.35
CTDNEP1-203ENST00000570385 XPCQ01831 940 aaPredicted RBP12.85□□□□□ -0.35
CTDNEP1-203ENST00000570385 ESCO1Q5FWF5 840 aa12.85□□□□□ -0.35
CTDNEP1-203ENST00000570385 NGLY1Q96IV0 654 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms