RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 KRI1Q8N9T8 703 aaKnown RBP7.3□□□□□ -1.24
VPS39-212ENST00000570023 CCDC102AQ96A19 550 aa7.3□□□□□ -1.24
VPS39-212ENST00000570023 TSR3Q9UJK0 312 aaKnown RBP7.3□□□□□ -1.24
VPS39-212ENST00000570023 PTPN5P54829 565 aa7.29□□□□□ -1.24
VPS39-212ENST00000570023 NYAP1Q6ZVC0 841 aa7.29□□□□□ -1.24
VPS39-212ENST00000570023 SLF2Q8IX21 1173 aa7.29□□□□□ -1.24
VPS39-212ENST00000570023 WBP1LQ9NX94 342 aa7.28□□□□□ -1.24
VPS39-212ENST00000570023 DAXXQ9UER7 740 aaPredicted RBP7.28□□□□□ -1.24
VPS39-212ENST00000570023 HPS5Q9UPZ3 1129 aa7.28□□□□□ -1.24
VPS39-212ENST00000570023 SLC4A3P48751 1232 aa7.27□□□□□ -1.25
VPS39-212ENST00000570023 PPP4CP60510 307 aa7.27□□□□□ -1.25
VPS39-212ENST00000570023 NECTIN2Q92692 538 aa7.27□□□□□ -1.25
VPS39-212ENST00000570023 NLRP7Q8WX94 980 aa7.26□□□□□ -1.25
VPS39-212ENST00000570023 AK7Q96M32 723 aa7.26□□□□□ -1.25
VPS39-212ENST00000570023 AMHR2Q16671 573 aa7.25□□□□□ -1.25
VPS39-212ENST00000570023 TMUB1Q9BVT8 246 aa7.25□□□□□ -1.25
VPS39-212ENST00000570023 SLC10A3P09131 477 aa7.24□□□□□ -1.25
VPS39-212ENST00000570023 TRIM66O15016 1216 aa7.23□□□□□ -1.25
VPS39-212ENST00000570023 RNF40O75150 1001 aa7.23□□□□□ -1.25
VPS39-212ENST00000570023 CLCN1P35523 988 aa7.23□□□□□ -1.25
VPS39-212ENST00000570023 RSPH4AQ5TD94 716 aa7.23□□□□□ -1.25
VPS39-212ENST00000570023 SULF1Q8IWU6 871 aa7.23□□□□□ -1.25
VPS39-212ENST00000570023 SLC24A3Q9HC58 644 aa7.23□□□□□ -1.25
VPS39-212ENST00000570023 MDM2Q00987 491 aaPredicted RBP7.22□□□□□ -1.25
VPS39-212ENST00000570023 PRR14Q9BWN1 585 aa7.22□□□□□ -1.25
VPS39-212ENST00000570023 APLP1P51693 650 aa7.21□□□□□ -1.26
VPS39-212ENST00000570023 GPCPD1Q9NPB8 672 aa7.21□□□□□ -1.26
VPS39-212ENST00000570023 REPIN1Q9BWE0 567 aaKnown RBP7.2□□□□□ -1.26
VPS39-212ENST00000570023 DDX11L8A8MPP1 907 aa7.19□□□□□ -1.26
VPS39-212ENST00000570023 ITGBL1O95965 494 aaPredicted RBP7.19□□□□□ -1.26
VPS39-212ENST00000570023 FAM217BQ9NTX9 383 aaPredicted RBP7.19□□□□□ -1.26
VPS39-212ENST00000570023 ACTN4O43707 911 aaKnown RBP7.18□□□□□ -1.26
VPS39-212ENST00000570023 CFHP08603 1231 aa7.18□□□□□ -1.26
VPS39-212ENST00000570023 CD46P15529 392 aa7.18□□□□□ -1.26
VPS39-212ENST00000570023 GCGRP47871 477 aa7.18□□□□□ -1.26
VPS39-212ENST00000570023 KMT5BQ4FZB7 885 aa7.18□□□□□ -1.26
VPS39-212ENST00000570023 IFFO2Q5TF58 517 aa7.18□□□□□ -1.26
VPS39-212ENST00000570023 PDE4DQ08499 809 aa7.17□□□□□ -1.26
VPS39-212ENST00000570023 TJAP1Q5JTD0 557 aa7.17□□□□□ -1.26
VPS39-212ENST00000570023 PARP9Q8IXQ6 854 aa7.17□□□□□ -1.26
VPS39-212ENST00000570023 RDH13Q8NBN7 331 aa7.17□□□□□ -1.26
VPS39-212ENST00000570023 TTLL12Q14166 644 aaPredicted RBP7.16□□□□□ -1.26
VPS39-212ENST00000570023 TPRNQ4KMQ1 711 aa7.16□□□□□ -1.26
VPS39-212ENST00000570023 GIGYF2Q6Y7W6 1299 aaKnown RBP7.16□□□□□ -1.26
VPS39-212ENST00000570023 SSTR3P32745 418 aaPredicted RBP7.15□□□□□ -1.26
VPS39-212ENST00000570023 PLA2G2EQ9NZK7 142 aa7.15□□□□□ -1.26
VPS39-212ENST00000570023 MTRQ99707 1265 aa7.14□□□□□ -1.27
VPS39-212ENST00000570023 PCDHB3Q9Y5E6 796 aa7.14□□□□□ -1.27
VPS39-212ENST00000570023 KCNC4Q03721 635 aa7.13□□□□□ -1.27
VPS39-212ENST00000570023 IL21Q9HBE4 155 aa7.13□□□□□ -1.27
VPS39-212ENST00000570023 FUT2Q10981 343 aa7.12□□□□□ -1.27
VPS39-212ENST00000570023 BLOC1S3Q6QNY0 202 aa7.12□□□□□ -1.27
VPS39-212ENST00000570023 KDM4AO75164 1064 aa7.11□□□□□ -1.27
VPS39-212ENST00000570023 MS4A1P11836 297 aa7.11□□□□□ -1.27
VPS39-212ENST00000570023 ATP6V1AP38606 617 aa7.11□□□□□ -1.27
VPS39-212ENST00000570023 USP46P62068 366 aa7.11□□□□□ -1.27
VPS39-212ENST00000570023 ZPR1O75312 459 aa7.1□□□□□ -1.27
VPS39-212ENST00000570023 NR1I2O75469 434 aa7.1□□□□□ -1.27
VPS39-212ENST00000570023 COPS2P61201 443 aa7.1□□□□□ -1.27
VPS39-212ENST00000570023 MORN1Q5T089 497 aa7.1□□□□□ -1.27
VPS39-212ENST00000570023 ERICH6Q7L0X2 663 aa7.1□□□□□ -1.27
VPS39-212ENST00000570023 ZNF516Q92618 1163 aa7.1□□□□□ -1.27
VPS39-212ENST00000570023 GRIPAP1Q4V328 841 aa7.09□□□□□ -1.27
VPS39-212ENST00000570023 SCUBE3Q8IX30 993 aa7.09□□□□□ -1.27
VPS39-212ENST00000570023 PUS10Q3MIT2 529 aaKnown RBP7.08□□□□□ -1.28
VPS39-212ENST00000570023 BEGAINQ9BUH8 593 aa7.08□□□□□ -1.28
VPS39-212ENST00000570023 SALL2Q9Y467 1007 aaPredicted RBP7.08□□□□□ -1.28
VPS39-212ENST00000570023 PRKCSHP14314 528 aaPredicted RBP7.07□□□□□ -1.28
VPS39-212ENST00000570023 NUTM1Q86Y26 1132 aa7.07□□□□□ -1.28
VPS39-212ENST00000570023 SPIRE2Q8WWL2 714 aa7.07□□□□□ -1.28
VPS39-212ENST00000570023 A0A0G2JS52 829 aa7.06□□□□□ -1.28
VPS39-212ENST00000570023 HOXA2O43364 376 aa7.06□□□□□ -1.28
VPS39-212ENST00000570023 NKX2-3Q8TAU0 364 aa7.06□□□□□ -1.28
VPS39-212ENST00000570023 THAP11Q96EK4 314 aa7.06□□□□□ -1.28
VPS39-212ENST00000570023 KDM4CQ9H3R0 1056 aa7.06□□□□□ -1.28
VPS39-212ENST00000570023 SLC27A5Q9Y2P5 690 aa7.06□□□□□ -1.28
VPS39-212ENST00000570023 GJA5P36382 358 aa7.05□□□□□ -1.28
VPS39-212ENST00000570023 DIXDC1Q155Q3 683 aa7.05□□□□□ -1.28
VPS39-212ENST00000570023 GPBP1L1Q9HC44 474 aaPredicted RBP7.05□□□□□ -1.28
VPS39-212ENST00000570023 Q3C1V9 767 aa7.04□□□□□ -1.28
VPS39-212ENST00000570023 BRICD5Q6PL45 260 aa7.04□□□□□ -1.28
VPS39-212ENST00000570023 TBC1D2Q9BYX2 928 aa7.04□□□□□ -1.28
VPS39-212ENST00000570023 FMNL1O95466 1100 aaPredicted RBP7.03□□□□□ -1.28
VPS39-212ENST00000570023 ADH1BP00325 375 aa7.03□□□□□ -1.28
VPS39-212ENST00000570023 MOXD2PA6NHM9 499 aa7.02□□□□□ -1.29
VPS39-212ENST00000570023 TLL1O43897 1013 aa7.02□□□□□ -1.29
VPS39-212ENST00000570023 BRPF1P55201 1214 aaPredicted RBP7.02□□□□□ -1.29
VPS39-212ENST00000570023 HLA-CQ95604 372 aa7.02□□□□□ -1.29
VPS39-212ENST00000570023 SPSB2Q99619 263 aa7.02□□□□□ -1.29
VPS39-212ENST00000570023 SPTLC1O15269 473 aa7.01□□□□□ -1.29
VPS39-212ENST00000570023 RGS20O76081 388 aa7.01□□□□□ -1.29
VPS39-212ENST00000570023 NEUROD2Q15784 382 aa7.01□□□□□ -1.29
VPS39-212ENST00000570023 DDRGK1Q96HY6 314 aa7.01□□□□□ -1.29
VPS39-212ENST00000570023 FAM117AQ9C073 453 aa7.01□□□□□ -1.29
VPS39-212ENST00000570023 PCDHGC3Q9UN70 934 aa7.01□□□□□ -1.29
VPS39-212ENST00000570023 FDX1P10109 184 aa7□□□□□ -1.29
VPS39-212ENST00000570023 NDUFV2P19404 249 aa7□□□□□ -1.29
VPS39-212ENST00000570023 GUCA2AQ02747 115 aa7□□□□□ -1.29
VPS39-212ENST00000570023 MYSM1Q5VVJ2 828 aa7□□□□□ -1.29
VPS39-212ENST00000570023 PPP1R18Q6NYC8 613 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms