RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 WBP1LQ9NX94 342 aa6.04□□□□□ -1.44
VPS35-208ENST00000568612 MINK1Q8N4C8 1332 aaPredicted RBP6.03□□□□□ -1.44
VPS35-208ENST00000568612 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.03□□□□□ -1.44
VPS35-208ENST00000568612 IRF6O14896 467 aa6.03□□□□□ -1.44
VPS35-208ENST00000568612 CCDC102AQ96A19 550 aa6.03□□□□□ -1.44
VPS35-208ENST00000568612 ZMYND10O75800 440 aa6.02□□□□□ -1.45
VPS35-208ENST00000568612 TMEM134Q9H6X4 195 aa6.02□□□□□ -1.45
VPS35-208ENST00000568612 BARGINQ6ZT62 677 aa6.01□□□□□ -1.45
VPS35-208ENST00000568612 PHOX2BQ99453 314 aa6.01□□□□□ -1.45
VPS35-208ENST00000568612 RDH13Q8NBN7 331 aa6□□□□□ -1.45
VPS35-208ENST00000568612 NECTIN2Q92692 538 aa6□□□□□ -1.45
VPS35-208ENST00000568612 DDX11L8A8MPP1 907 aa5.99□□□□□ -1.45
VPS35-208ENST00000568612 MDM2Q00987 491 aaPredicted RBP5.99□□□□□ -1.45
VPS35-208ENST00000568612 RSPH4AQ5TD94 716 aa5.99□□□□□ -1.45
VPS35-208ENST00000568612 NYAP1Q6ZVC0 841 aa5.99□□□□□ -1.45
VPS35-208ENST00000568612 SLC24A3Q9HC58 644 aa5.98□□□□□ -1.45
VPS35-208ENST00000568612 PLA2G2EQ9NZK7 142 aa5.98□□□□□ -1.45
VPS35-208ENST00000568612 DAXXQ9UER7 740 aaPredicted RBP5.98□□□□□ -1.45
VPS35-208ENST00000568612 CFHP08603 1231 aa5.97□□□□□ -1.45
VPS35-208ENST00000568612 APLP1P51693 650 aa5.97□□□□□ -1.45
VPS35-208ENST00000568612 TTLL12Q14166 644 aaPredicted RBP5.97□□□□□ -1.45
VPS35-208ENST00000568612 KMT5BQ4FZB7 885 aa5.97□□□□□ -1.45
VPS35-208ENST00000568612 SLC10A3P09131 477 aa5.96□□□□□ -1.46
VPS35-208ENST00000568612 CLCN1P35523 988 aa5.96□□□□□ -1.46
VPS35-208ENST00000568612 SULF1Q8IWU6 871 aa5.96□□□□□ -1.46
VPS35-208ENST00000568612 AK7Q96M32 723 aa5.96□□□□□ -1.46
VPS35-208ENST00000568612 COPS2P61201 443 aa5.95□□□□□ -1.46
VPS35-208ENST00000568612 PRR14Q9BWN1 585 aa5.95□□□□□ -1.46
VPS35-208ENST00000568612 GPCPD1Q9NPB8 672 aa5.95□□□□□ -1.46
VPS35-208ENST00000568612 PCDHB3Q9Y5E6 796 aa5.94□□□□□ -1.46
VPS35-208ENST00000568612 TRIM66O15016 1216 aa5.93□□□□□ -1.46
VPS35-208ENST00000568612 TPRNQ4KMQ1 711 aa5.93□□□□□ -1.46
VPS35-208ENST00000568612 MTRQ99707 1265 aa5.93□□□□□ -1.46
VPS35-208ENST00000568612 KCNC4Q03721 635 aa5.92□□□□□ -1.46
VPS35-208ENST00000568612 ACTN4O43707 911 aaKnown RBP5.91□□□□□ -1.46
VPS35-208ENST00000568612 PUS10Q3MIT2 529 aaKnown RBP5.91□□□□□ -1.46
VPS35-208ENST00000568612 BLOC1S3Q6QNY0 202 aa5.91□□□□□ -1.46
VPS35-208ENST00000568612 REPIN1Q9BWE0 567 aaKnown RBP5.91□□□□□ -1.46
VPS35-208ENST00000568612 IL21Q9HBE4 155 aa5.91□□□□□ -1.46
VPS35-208ENST00000568612 ITGBL1O95965 494 aaPredicted RBP5.9□□□□□ -1.46
VPS35-208ENST00000568612 CD46P15529 392 aa5.9□□□□□ -1.46
VPS35-208ENST00000568612 GCGRP47871 477 aa5.9□□□□□ -1.46
VPS35-208ENST00000568612 AMHR2Q16671 573 aa5.9□□□□□ -1.46
VPS35-208ENST00000568612 GIGYF2Q6Y7W6 1299 aaKnown RBP5.9□□□□□ -1.46
VPS35-208ENST00000568612 FAM217BQ9NTX9 383 aaPredicted RBP5.9□□□□□ -1.46
VPS35-208ENST00000568612 SSTR3P32745 418 aaPredicted RBP5.89□□□□□ -1.47
VPS35-208ENST00000568612 PDE4DQ08499 809 aa5.89□□□□□ -1.47
VPS35-208ENST00000568612 FUT2Q10981 343 aa5.89□□□□□ -1.47
VPS35-208ENST00000568612 TJAP1Q5JTD0 557 aa5.89□□□□□ -1.47
VPS35-208ENST00000568612 PARP9Q8IXQ6 854 aa5.89□□□□□ -1.47
VPS35-208ENST00000568612 ZNF516Q92618 1163 aa5.89□□□□□ -1.47
VPS35-208ENST00000568612 NUTM1Q86Y26 1132 aa5.88□□□□□ -1.47
VPS35-208ENST00000568612 KDM4AO75164 1064 aa5.87□□□□□ -1.47
VPS35-208ENST00000568612 ZPR1O75312 459 aa5.87□□□□□ -1.47
VPS35-208ENST00000568612 NR1I2O75469 434 aa5.87□□□□□ -1.47
VPS35-208ENST00000568612 ATP6V1AP38606 617 aa5.87□□□□□ -1.47
VPS35-208ENST00000568612 MYT1Q01538 1121 aa5.87□□□□□ -1.47
VPS35-208ENST00000568612 GRIPAP1Q4V328 841 aa5.87□□□□□ -1.47
VPS35-208ENST00000568612 TMUB1Q9BVT8 246 aa5.87□□□□□ -1.47
VPS35-208ENST00000568612 TLL1O43897 1013 aa5.86□□□□□ -1.47
VPS35-208ENST00000568612 NKX2-3Q8TAU0 364 aa5.86□□□□□ -1.47
VPS35-208ENST00000568612 BEGAINQ9BUH8 593 aa5.86□□□□□ -1.47
VPS35-208ENST00000568612 SCUBE3Q8IX30 993 aa5.85□□□□□ -1.47
VPS35-208ENST00000568612 A0A0G2JS52 829 aa5.84□□□□□ -1.47
VPS35-208ENST00000568612 MS4A1P11836 297 aa5.84□□□□□ -1.47
VPS35-208ENST00000568612 PRKCSHP14314 528 aaPredicted RBP5.84□□□□□ -1.47
VPS35-208ENST00000568612 MORN1Q5T089 497 aa5.84□□□□□ -1.47
VPS35-208ENST00000568612 IFFO2Q5TF58 517 aa5.84□□□□□ -1.47
VPS35-208ENST00000568612 HLA-CQ95604 372 aa5.84□□□□□ -1.47
VPS35-208ENST00000568612 GPBP1L1Q9HC44 474 aaPredicted RBP5.84□□□□□ -1.47
VPS35-208ENST00000568612 SLC27A5Q9Y2P5 690 aa5.84□□□□□ -1.47
VPS35-208ENST00000568612 HOXA2O43364 376 aa5.83□□□□□ -1.48
VPS35-208ENST00000568612 GGCXP38435 758 aa5.83□□□□□ -1.48
VPS35-208ENST00000568612 USP46P62068 366 aa5.83□□□□□ -1.48
VPS35-208ENST00000568612 NEUROD2Q15784 382 aa5.83□□□□□ -1.48
VPS35-208ENST00000568612 FMNL1O95466 1100 aaPredicted RBP5.82□□□□□ -1.48
VPS35-208ENST00000568612 GUCA2AQ02747 115 aa5.82□□□□□ -1.48
VPS35-208ENST00000568612 PPP1R18Q6NYC8 613 aa5.82□□□□□ -1.48
VPS35-208ENST00000568612 SPIRE2Q8WWL2 714 aa5.82□□□□□ -1.48
VPS35-208ENST00000568612 SPSB2Q99619 263 aa5.82□□□□□ -1.48
VPS35-208ENST00000568612 S1PR4O95977 384 aa5.81□□□□□ -1.48
VPS35-208ENST00000568612 ADH1BP00325 375 aa5.81□□□□□ -1.48
VPS35-208ENST00000568612 NDUFV2P19404 249 aa5.81□□□□□ -1.48
VPS35-208ENST00000568612 Q3C1V9 767 aa5.81□□□□□ -1.48
VPS35-208ENST00000568612 RNF19BQ6ZMZ0 732 aa5.81□□□□□ -1.48
VPS35-208ENST00000568612 TBC1D2Q9BYX2 928 aa5.81□□□□□ -1.48
VPS35-208ENST00000568612 KDM4CQ9H3R0 1056 aa5.81□□□□□ -1.48
VPS35-208ENST00000568612 ATP1B4Q9UN42 357 aaPredicted RBP5.81□□□□□ -1.48
VPS35-208ENST00000568612 MOXD2PA6NHM9 499 aa5.8□□□□□ -1.48
VPS35-208ENST00000568612 FDX1P10109 184 aa5.8□□□□□ -1.48
VPS35-208ENST00000568612 SLC6A16Q9GZN6 736 aa5.8□□□□□ -1.48
VPS35-208ENST00000568612 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.8□□□□□ -1.48
VPS35-208ENST00000568612 C6orf229H3BNL8 230 aa5.79□□□□□ -1.48
VPS35-208ENST00000568612 PPEF1O14829 653 aaPredicted RBP5.79□□□□□ -1.48
VPS35-208ENST00000568612 DIXDC1Q155Q3 683 aa5.79□□□□□ -1.48
VPS35-208ENST00000568612 CSPP1Q1MSJ5 1256 aa5.79□□□□□ -1.48
VPS35-208ENST00000568612 SYMPKQ92797 1274 aaKnown RBP5.79□□□□□ -1.48
VPS35-208ENST00000568612 BRICD5Q6PL45 260 aa5.78□□□□□ -1.48
VPS35-208ENST00000568612 THAP11Q96EK4 314 aa5.77□□□□□ -1.49
VPS35-208ENST00000568612 USB1Q9BQ65 265 aaKnown RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms