RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 TET3O43151 1660 aa21.36■■□□□ 1.01
CLN3-235ENST00000568497 NWD1Q149M9 1564 aa21.36■■□□□ 1.01
CLN3-235ENST00000568497 DUOX2Q9NRD8 1548 aa21.35■■□□□ 1.01
CLN3-235ENST00000568497 KDM5AP29375 1690 aaKnown RBP21.35■■□□□ 1.01
CLN3-235ENST00000568497 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.32■■□□□ 1
CLN3-235ENST00000568497 DAPK1P53355 1430 aa21.31■■□□□ 1
CLN3-235ENST00000568497 C14orf37Q86TY3 774 aa21.31■■□□□ 1
CLN3-235ENST00000568497 RRP7BPQ9NSQ0 103 aa21.31■■□□□ 1
CLN3-235ENST00000568497 IDI1Q13907 227 aa21.29■■□□□ 1
CLN3-235ENST00000568497 NUTM2BA6NNL0 878 aaPredicted RBP21.28■■□□□ 1
CLN3-235ENST00000568497 NUTM2EB1AL46 878 aaPredicted RBP21.28■■□□□ 1
CLN3-235ENST00000568497 NUTM2AQ8IVF1 878 aaPredicted RBP21.28■■□□□ 1
CLN3-235ENST00000568497 ERBINQ96RT1 1412 aa21.28■■□□□ 1
CLN3-235ENST00000568497 CROCC2H7BZ55 1655 aa21.28■■□□□ 1
CLN3-235ENST00000568497 SHPRHQ149N8 1683 aa21.28■■□□□ 1
CLN3-235ENST00000568497 CDK12Q9NYV4 1490 aaPredicted RBP21.27■■□□□ 1
CLN3-235ENST00000568497 KANK1Q14678 1352 aa21.26■□□□□ 0.99
CLN3-235ENST00000568497 KIF15Q9NS87 1388 aa21.25■□□□□ 0.99
CLN3-235ENST00000568497 ADGRB3O60242 1522 aa21.24■□□□□ 0.99
CLN3-235ENST00000568497 SRCAPQ6ZRS2 3230 aa21.24■□□□□ 0.99
CLN3-235ENST00000568497 AHDC1Q5TGY3 1603 aaPredicted RBP21.23■□□□□ 0.99
CLN3-235ENST00000568497 AFF2P51816 1311 aa21.23■□□□□ 0.99
CLN3-235ENST00000568497 NCOA3Q9Y6Q9 1424 aa21.22■□□□□ 0.99
CLN3-235ENST00000568497 LMTK2Q8IWU2 1503 aa21.22■□□□□ 0.99
CLN3-235ENST00000568497 CHD2O14647 1828 aaKnown RBP21.22■□□□□ 0.99
CLN3-235ENST00000568497 PPP1R15AO75807 674 aaPredicted RBP21.21■□□□□ 0.99
CLN3-235ENST00000568497 NUTM2DQ5VT03 806 aaPredicted RBP21.21■□□□□ 0.99
CLN3-235ENST00000568497 NOS1P29475 1434 aa21.2■□□□□ 0.98
CLN3-235ENST00000568497 ATF3P18847 181 aa21.19■□□□□ 0.98
CLN3-235ENST00000568497 CADPS2Q86UW7 1296 aa21.19■□□□□ 0.98
CLN3-235ENST00000568497 RGS12O14924 1447 aa21.19■□□□□ 0.98
CLN3-235ENST00000568497 SLC52A1Q9NWF4 448 aa21.18■□□□□ 0.98
CLN3-235ENST00000568497 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.17■□□□□ 0.98
CLN3-235ENST00000568497 PLEKHG1Q9ULL1 1385 aa21.16■□□□□ 0.98
CLN3-235ENST00000568497 DIP2AQ14689 1571 aa21.14■□□□□ 0.98
CLN3-235ENST00000568497 C8orf37Q96NL8 207 aa21.14■□□□□ 0.97
CLN3-235ENST00000568497 ZFYVE9O95405 1425 aa21.13■□□□□ 0.97
CLN3-235ENST00000568497 RRBP1Q9P2E9 1410 aaKnown RBP21.13■□□□□ 0.97
CLN3-235ENST00000568497 RBM6P78332 1123 aaKnown RBP21.13■□□□□ 0.97
CLN3-235ENST00000568497 C19orf44Q9H6X5 657 aa21.13■□□□□ 0.97
CLN3-235ENST00000568497 QTRT2Q9H974 415 aaKnown RBP21.13■□□□□ 0.97
CLN3-235ENST00000568497 TBX22Q9Y458 520 aa21.13■□□□□ 0.97
CLN3-235ENST00000568497 ANKRD30AQ9BXX3 1397 aa21.12■□□□□ 0.97
CLN3-235ENST00000568497 HDGFP51858 240 aaKnown RBP21.12■□□□□ 0.97
CLN3-235ENST00000568497 FOXD1Q16676 465 aa21.12■□□□□ 0.97
CLN3-235ENST00000568497 BRINP3Q76B58 766 aa21.12■□□□□ 0.97
CLN3-235ENST00000568497 MYO5BQ9ULV0 1848 aa21.11■□□□□ 0.97
CLN3-235ENST00000568497 ZRANB1Q9UGI0 708 aa21.11■□□□□ 0.97
CLN3-235ENST00000568497 RIMS2Q9UQ26 1411 aa21.11■□□□□ 0.97
CLN3-235ENST00000568497 ATAD2Q6PL18 1390 aa21.09■□□□□ 0.97
CLN3-235ENST00000568497 GCC2Q8IWJ2 1684 aa21.09■□□□□ 0.97
CLN3-235ENST00000568497 ADGRL2O95490 1459 aa21.08■□□□□ 0.97
CLN3-235ENST00000568497 ASXL1Q8IXJ9 1541 aa21.06■□□□□ 0.96
CLN3-235ENST00000568497 NGLY1Q96IV0 654 aa21.05■□□□□ 0.96
CLN3-235ENST00000568497 PIK3R4Q99570 1358 aa21.05■□□□□ 0.96
CLN3-235ENST00000568497 RPRD2Q5VT52 1461 aaKnown RBP21.05■□□□□ 0.96
CLN3-235ENST00000568497 SETD5Q9C0A6 1442 aa21.04■□□□□ 0.96
CLN3-235ENST00000568497 CHGAP10645 457 aaKnown RBP21.04■□□□□ 0.96
CLN3-235ENST00000568497 SETBP1Q9Y6X0 1596 aa21.04■□□□□ 0.96
CLN3-235ENST00000568497 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.03■□□□□ 0.96
CLN3-235ENST00000568497 LRRC59Q96AG4 307 aaKnown RBP21.03■□□□□ 0.96
CLN3-235ENST00000568497 ADAMTS13Q76LX8 1427 aa21.03■□□□□ 0.96
CLN3-235ENST00000568497 ANKRD50Q9ULJ7 1429 aa21.03■□□□□ 0.96
CLN3-235ENST00000568497 TMEM131LA2VDJ0 1609 aa21.01■□□□□ 0.95
CLN3-235ENST00000568497 NHSL1Q5SYE7 1610 aa21.01■□□□□ 0.95
CLN3-235ENST00000568497 ADAMTS2O95450 1211 aa21.01■□□□□ 0.95
CLN3-235ENST00000568497 PNPLA6Q8IY17 1366 aa20.99■□□□□ 0.95
CLN3-235ENST00000568497 DCCP43146 1447 aa20.99■□□□□ 0.95
CLN3-235ENST00000568497 AMOTL2Q9Y2J4 779 aa20.99■□□□□ 0.95
CLN3-235ENST00000568497 TRPM2O94759 1503 aa20.98■□□□□ 0.95
CLN3-235ENST00000568497 DDX17Q92841 729 aaKnown RBP20.97■□□□□ 0.95
CLN3-235ENST00000568497 ROCK1Q13464 1354 aa20.97■□□□□ 0.95
CLN3-235ENST00000568497 MST1RQ04912 1400 aa20.95■□□□□ 0.95
CLN3-235ENST00000568497 USP21Q9UK80 565 aa20.95■□□□□ 0.94
CLN3-235ENST00000568497 PTPRUQ92729 1446 aa20.93■□□□□ 0.94
CLN3-235ENST00000568497 TRPC5Q9UL62 973 aaPredicted RBP20.92■□□□□ 0.94
CLN3-235ENST00000568497 NAIPQ13075 1403 aa20.92■□□□□ 0.94
CLN3-235ENST00000568497 CCDC125Q86Z20 511 aa20.88■□□□□ 0.93
CLN3-235ENST00000568497 XRN1Q8IZH2 1706 aaKnown RBP20.87■□□□□ 0.93
CLN3-235ENST00000568497 UNC13BO14795 1591 aa20.87■□□□□ 0.93
CLN3-235ENST00000568497 NUP155O75694 1391 aa20.86■□□□□ 0.93
CLN3-235ENST00000568497 EP400Q96L91 3159 aa20.85■□□□□ 0.93
CLN3-235ENST00000568497 ADGRL3Q9HAR2 1447 aa20.84■□□□□ 0.93
CLN3-235ENST00000568497 ATRNO75882 1429 aa20.83■□□□□ 0.93
CLN3-235ENST00000568497 NALCNQ8IZF0 1738 aa20.81■□□□□ 0.92
CLN3-235ENST00000568497 HFM1A2PYH4 1435 aa20.81■□□□□ 0.92
CLN3-235ENST00000568497 PTCH1Q13635 1447 aa20.81■□□□□ 0.92
CLN3-235ENST00000568497 FNBP4Q8N3X1 1017 aaPredicted RBP20.81■□□□□ 0.92
CLN3-235ENST00000568497 E9PCH4 1651 aa20.8■□□□□ 0.92
CLN3-235ENST00000568497 NRXN3Q9Y4C0 1643 aa20.78■□□□□ 0.92
CLN3-235ENST00000568497 C1orf167Q5SNV9 1468 aa20.77■□□□□ 0.92
CLN3-235ENST00000568497 LAMC1P11047 1609 aa20.77■□□□□ 0.92
CLN3-235ENST00000568497 IQGAP3Q86VI3 1631 aa20.77■□□□□ 0.92
CLN3-235ENST00000568497 METP08581 1390 aa20.76■□□□□ 0.91
CLN3-235ENST00000568497 BLMP54132 1417 aaPredicted RBP20.76■□□□□ 0.91
CLN3-235ENST00000568497 SOS2Q07890 1332 aaPredicted RBP20.76■□□□□ 0.91
CLN3-235ENST00000568497 LRP5O75197 1615 aa20.75■□□□□ 0.91
CLN3-235ENST00000568497 SF3B2Q13435 895 aaKnown RBP20.74■□□□□ 0.91
CLN3-235ENST00000568497 ZNF326Q5BKZ1 582 aaKnown RBP20.74■□□□□ 0.91
CLN3-235ENST00000568497 DEFB132Q7Z7B7 95 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms