RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	NWD1	Q149M9	1564 aa		18.81	■□□□□ 0.6
CLK3-222	ENST00000568232	RRP7BP	Q9NSQ0	103 aa		18.8	■□□□□ 0.6
CLK3-222	ENST00000568232	KIF15	Q9NS87	1388 aa		18.78	■□□□□ 0.6
CLK3-222	ENST00000568232	FGD6	Q6ZV73	1430 aa		18.77	■□□□□ 0.6
CLK3-222	ENST00000568232	NUTM2B	A6NNL0	878 aa	Predicted RBP	18.76	■□□□□ 0.59
CLK3-222	ENST00000568232	NUTM2E	B1AL46	878 aa	Predicted RBP	18.76	■□□□□ 0.59
CLK3-222	ENST00000568232	NUTM2A	Q8IVF1	878 aa	Predicted RBP	18.76	■□□□□ 0.59
CLK3-222	ENST00000568232	KDM5A	P29375	1690 aa	Known RBP	18.75	■□□□□ 0.59
CLK3-222	ENST00000568232	MYOM3	Q5VTT5	1437 aa		18.74	■□□□□ 0.59
CLK3-222	ENST00000568232	ERBIN	Q96RT1	1412 aa		18.74	■□□□□ 0.59
CLK3-222	ENST00000568232	KANK1	Q14678	1352 aa		18.73	■□□□□ 0.59
CLK3-222	ENST00000568232	C14orf37	Q86TY3	774 aa		18.73	■□□□□ 0.59
CLK3-222	ENST00000568232	KANK4	Q5T7N3	995 aa	Predicted RBP	18.72	■□□□□ 0.59
CLK3-222	ENST00000568232	ADGRB3	O60242	1522 aa		18.71	■□□□□ 0.59
CLK3-222	ENST00000568232	HOXD11	P31277	338 aa	Predicted RBP	18.71	■□□□□ 0.59
CLK3-222	ENST00000568232	CNKSR2	Q8WXI2	1034 aa		18.71	■□□□□ 0.59
CLK3-222	ENST00000568232	AFF2	P51816	1311 aa		18.71	■□□□□ 0.59
CLK3-222	ENST00000568232	NOS1	P29475	1434 aa		18.7	■□□□□ 0.58
CLK3-222	ENST00000568232	CDK12	Q9NYV4	1490 aa	Predicted RBP	18.7	■□□□□ 0.58
CLK3-222	ENST00000568232	SHPRH	Q149N8	1683 aa		18.69	■□□□□ 0.58
CLK3-222	ENST00000568232	ABCC5	O15440	1437 aa		18.69	■□□□□ 0.58
CLK3-222	ENST00000568232	AHDC1	Q5TGY3	1603 aa	Predicted RBP	18.69	■□□□□ 0.58
CLK3-222	ENST00000568232	PLEKHG1	Q9ULL1	1385 aa		18.68	■□□□□ 0.58
CLK3-222	ENST00000568232	CHD2	O14647	1828 aa	Known RBP	18.68	■□□□□ 0.58
CLK3-222	ENST00000568232	LMTK2	Q8IWU2	1503 aa		18.68	■□□□□ 0.58
CLK3-222	ENST00000568232	ZFYVE9	O95405	1425 aa		18.67	■□□□□ 0.58
CLK3-222	ENST00000568232	PPP1R15A	O75807	674 aa	Predicted RBP	18.67	■□□□□ 0.58
CLK3-222	ENST00000568232	ATF3	P18847	181 aa		18.67	■□□□□ 0.58
CLK3-222	ENST00000568232	CADPS2	Q86UW7	1296 aa		18.67	■□□□□ 0.58
CLK3-222	ENST00000568232	C19orf44	Q9H6X5	657 aa		18.67	■□□□□ 0.58
CLK3-222	ENST00000568232	SLC52A1	Q9NWF4	448 aa		18.67	■□□□□ 0.58
CLK3-222	ENST00000568232	BRINP3	Q76B58	766 aa		18.66	■□□□□ 0.58
CLK3-222	ENST00000568232	RGS12	O14924	1447 aa		18.66	■□□□□ 0.58
CLK3-222	ENST00000568232	NCOA3	Q9Y6Q9	1424 aa		18.66	■□□□□ 0.58
CLK3-222	ENST00000568232	DIP2A	Q14689	1571 aa		18.65	■□□□□ 0.58
CLK3-222	ENST00000568232	TBX22	Q9Y458	520 aa		18.65	■□□□□ 0.58
CLK3-222	ENST00000568232	RIMS2	Q9UQ26	1411 aa		18.65	■□□□□ 0.58
CLK3-222	ENST00000568232	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	18.64	■□□□□ 0.57
CLK3-222	ENST00000568232	NUTM2D	Q5VT03	806 aa	Predicted RBP	18.64	■□□□□ 0.57
CLK3-222	ENST00000568232	QTRT2	Q9H974	415 aa	Known RBP	18.64	■□□□□ 0.57
CLK3-222	ENST00000568232	CHIC2	Q9UKJ5	165 aa		18.64	■□□□□ 0.57
CLK3-222	ENST00000568232	C8orf37	Q96NL8	207 aa		18.62	■□□□□ 0.57
CLK3-222	ENST00000568232	CROCC2	H7BZ55	1655 aa		18.61	■□□□□ 0.57
CLK3-222	ENST00000568232	RBM6	P78332	1123 aa	Known RBP	18.61	■□□□□ 0.57
CLK3-222	ENST00000568232	DAPK1	P53355	1430 aa		18.6	■□□□□ 0.57
CLK3-222	ENST00000568232	HDGF	P51858	240 aa	Known RBP	18.6	■□□□□ 0.57
CLK3-222	ENST00000568232	ADAMTS13	Q76LX8	1427 aa		18.59	■□□□□ 0.57
CLK3-222	ENST00000568232	MYO5B	Q9ULV0	1848 aa		18.58	■□□□□ 0.57
CLK3-222	ENST00000568232	CHGA	P10645	457 aa	Known RBP	18.58	■□□□□ 0.56
CLK3-222	ENST00000568232	DDX17	Q92841	729 aa	Known RBP	18.57	■□□□□ 0.56
CLK3-222	ENST00000568232	AMOTL2	Q9Y2J4	779 aa		18.57	■□□□□ 0.56
CLK3-222	ENST00000568232	VPS8	Q8N3P4	1428 aa		18.57	■□□□□ 0.56
CLK3-222	ENST00000568232	SETD5	Q9C0A6	1442 aa		18.57	■□□□□ 0.56
CLK3-222	ENST00000568232	ANKRD30A	Q9BXX3	1397 aa		18.56	■□□□□ 0.56
CLK3-222	ENST00000568232	ASXL1	Q8IXJ9	1541 aa		18.55	■□□□□ 0.56
CLK3-222	ENST00000568232	GCC2	Q8IWJ2	1684 aa		18.55	■□□□□ 0.56
CLK3-222	ENST00000568232	LRRC59	Q96AG4	307 aa	Known RBP	18.55	■□□□□ 0.56
CLK3-222	ENST00000568232	TMEM131L	A2VDJ0	1609 aa		18.55	■□□□□ 0.56
CLK3-222	ENST00000568232	PTPN23	Q9H3S7	1636 aa		18.55	■□□□□ 0.56
CLK3-222	ENST00000568232	PTPRU	Q92729	1446 aa		18.55	■□□□□ 0.56
CLK3-222	ENST00000568232	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	18.54	■□□□□ 0.56
CLK3-222	ENST00000568232	RNF216	Q9NWF9	866 aa	Predicted RBP	18.54	■□□□□ 0.56
CLK3-222	ENST00000568232	ZRANB1	Q9UGI0	708 aa		18.54	■□□□□ 0.56
CLK3-222	ENST00000568232	ADAMTS2	O95450	1211 aa		18.53	■□□□□ 0.56
CLK3-222	ENST00000568232	PIK3R4	Q99570	1358 aa		18.53	■□□□□ 0.56
CLK3-222	ENST00000568232	NGLY1	Q96IV0	654 aa		18.52	■□□□□ 0.56
CLK3-222	ENST00000568232	ATAD2	Q6PL18	1390 aa		18.52	■□□□□ 0.55
CLK3-222	ENST00000568232	PNPLA6	Q8IY17	1366 aa		18.52	■□□□□ 0.55
CLK3-222	ENST00000568232	RPRD2	Q5VT52	1461 aa	Known RBP	18.52	■□□□□ 0.55
CLK3-222	ENST00000568232	SETBP1	Q9Y6X0	1596 aa		18.51	■□□□□ 0.55
CLK3-222	ENST00000568232	MST1R	Q04912	1400 aa		18.51	■□□□□ 0.55
CLK3-222	ENST00000568232	EP400	Q96L91	3159 aa		18.49	■□□□□ 0.55
CLK3-222	ENST00000568232	NHSL1	Q5SYE7	1610 aa		18.49	■□□□□ 0.55
CLK3-222	ENST00000568232	DCC	P43146	1447 aa		18.49	■□□□□ 0.55
CLK3-222	ENST00000568232	TRPM2	O94759	1503 aa		18.47	■□□□□ 0.55
CLK3-222	ENST00000568232	USP21	Q9UK80	565 aa		18.46	■□□□□ 0.55
CLK3-222	ENST00000568232	ANKRD50	Q9ULJ7	1429 aa		18.42	■□□□□ 0.54
CLK3-222	ENST00000568232	TRPC5	Q9UL62	973 aa	Predicted RBP	18.42	■□□□□ 0.54
CLK3-222	ENST00000568232	ADGRL2	O95490	1459 aa		18.41	■□□□□ 0.54
CLK3-222	ENST00000568232	LOC105371045	A0A1W2PR82	267 aa		18.41	■□□□□ 0.54
CLK3-222	ENST00000568232	UNC13B	O14795	1591 aa		18.41	■□□□□ 0.54
CLK3-222	ENST00000568232	DCAF8L1	A6NGE4	600 aa		18.4	■□□□□ 0.54
CLK3-222	ENST00000568232	MET	P08581	1390 aa		18.4	■□□□□ 0.54
CLK3-222	ENST00000568232	XRN1	Q8IZH2	1706 aa	Known RBP	18.4	■□□□□ 0.54
CLK3-222	ENST00000568232	FNBP4	Q8N3X1	1017 aa	Predicted RBP	18.39	■□□□□ 0.53
CLK3-222	ENST00000568232	CCDC125	Q86Z20	511 aa		18.37	■□□□□ 0.53
CLK3-222	ENST00000568232	ATRN	O75882	1429 aa		18.37	■□□□□ 0.53
CLK3-222	ENST00000568232	ADGRL3	Q9HAR2	1447 aa		18.37	■□□□□ 0.53
CLK3-222	ENST00000568232		E9PCH4	1651 aa		18.36	■□□□□ 0.53
CLK3-222	ENST00000568232	ORAI2	Q96SN7	254 aa		18.36	■□□□□ 0.53
CLK3-222	ENST00000568232	NRXN3	Q9Y4C0	1643 aa		18.36	■□□□□ 0.53
CLK3-222	ENST00000568232	C1orf167	Q5SNV9	1468 aa		18.35	■□□□□ 0.53
CLK3-222	ENST00000568232	FAM50A	Q14320	339 aa	Known RBP	18.35	■□□□□ 0.53
CLK3-222	ENST00000568232	SOS2	Q07890	1332 aa	Predicted RBP	18.34	■□□□□ 0.53
CLK3-222	ENST00000568232	APLP2	Q06481	763 aa		18.33	■□□□□ 0.52
CLK3-222	ENST00000568232	PTCH1	Q13635	1447 aa		18.32	■□□□□ 0.52
CLK3-222	ENST00000568232	NALCN	Q8IZF0	1738 aa		18.32	■□□□□ 0.52
CLK3-222	ENST00000568232	BCL9L	Q86UU0	1499 aa		18.31	■□□□□ 0.52
CLK3-222	ENST00000568232	NCBP3	Q53F19	620 aa	Known RBP	18.3	■□□□□ 0.52
CLK3-222	ENST00000568232	ZNF326	Q5BKZ1	582 aa	Known RBP	18.3	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms