RNA–Protein interactions for RNA: ENST00000568219.5

PALB2-206, Transcript of partner and localizer of BRCA2, humanhuman

TSL 1 (best) BASIC

Gene PALB2, Length 3,963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-206ENST00000568219 CASC1Q6TDU7 716 aa13.55□□□□□ -0.24
PALB2-206ENST00000568219 DAPK1P53355 1430 aa13.54□□□□□ -0.24
PALB2-206ENST00000568219 NUTM2DQ5VT03 806 aaPredicted RBP13.54□□□□□ -0.24
PALB2-206ENST00000568219 C1orf115Q9H7X2 142 aa13.54□□□□□ -0.24
PALB2-206ENST00000568219 ZHX1Q9UKY1 873 aaPredicted RBP13.54□□□□□ -0.24
PALB2-206ENST00000568219 PRPF40AO75400 957 aaKnown RBP13.54□□□□□ -0.24
PALB2-206ENST00000568219 WWC1Q8IX03 1113 aa13.54□□□□□ -0.24
PALB2-206ENST00000568219 PDS5BQ9NTI5 1447 aa13.54□□□□□ -0.24
PALB2-206ENST00000568219 PER1O15534 1290 aaPredicted RBP13.53□□□□□ -0.24
PALB2-206ENST00000568219 PDCL3Q9H2J4 239 aa13.53□□□□□ -0.24
PALB2-206ENST00000568219 UQCRHLA0A096LP55 91 aa13.53□□□□□ -0.24
PALB2-206ENST00000568219 UQCRHP07919 91 aa13.53□□□□□ -0.24
PALB2-206ENST00000568219 PTMSP20962 102 aa13.53□□□□□ -0.24
PALB2-206ENST00000568219 CDK13Q14004 1512 aaKnown RBP13.52□□□□□ -0.24
PALB2-206ENST00000568219 ZSCAN30Q86W11 494 aa13.52□□□□□ -0.25
PALB2-206ENST00000568219 DMRT2Q9Y5R5 561 aa13.52□□□□□ -0.25
PALB2-206ENST00000568219 CCDC173Q0VFZ6 552 aa13.52□□□□□ -0.25
PALB2-206ENST00000568219 CDK11BP21127 795 aaKnown RBP13.51□□□□□ -0.25
PALB2-206ENST00000568219 SSFA2P28290 1259 aa13.51□□□□□ -0.25
PALB2-206ENST00000568219 STK26Q9P289 416 aa13.51□□□□□ -0.25
PALB2-206ENST00000568219 ABCC5O15440 1437 aa13.51□□□□□ -0.25
PALB2-206ENST00000568219 RLBP1P12271 317 aa13.51□□□□□ -0.25
PALB2-206ENST00000568219 MTHFSP49914 203 aa13.51□□□□□ -0.25
PALB2-206ENST00000568219 EXOSC9Q06265 439 aaKnown RBP13.51□□□□□ -0.25
PALB2-206ENST00000568219 RUNDC1Q96C34 613 aa13.51□□□□□ -0.25
PALB2-206ENST00000568219 RARSP54136 660 aaKnown RBP13.5□□□□□ -0.25
PALB2-206ENST00000568219 DDX19BQ9UMR2 479 aa13.5□□□□□ -0.25
PALB2-206ENST00000568219 DISP3Q9P2K9 1392 aa13.5□□□□□ -0.25
PALB2-206ENST00000568219 SPATA31E1Q6ZUB1 1445 aa13.5□□□□□ -0.25
PALB2-206ENST00000568219 CHAF1AQ13111 956 aaPredicted RBP13.5□□□□□ -0.25
PALB2-206ENST00000568219 EIF3AQ14152 1382 aaKnown RBP13.49□□□□□ -0.25
PALB2-206ENST00000568219 SRPK2P78362 688 aaKnown RBP13.49□□□□□ -0.25
PALB2-206ENST00000568219 RBM42Q9BTD8 480 aaKnown RBP13.48□□□□□ -0.25
PALB2-206ENST00000568219 PRG4Q92954 1404 aaPredicted RBP13.48□□□□□ -0.25
PALB2-206ENST00000568219 DRC7Q8IY82 874 aa13.48□□□□□ -0.25
PALB2-206ENST00000568219 MVPQ14764 893 aaKnown RBP13.47□□□□□ -0.25
PALB2-206ENST00000568219 PARD3Q8TEW0 1356 aa13.47□□□□□ -0.25
PALB2-206ENST00000568219 NOB1Q9ULX3 412 aaKnown RBP13.47□□□□□ -0.25
PALB2-206ENST00000568219 EHBP1L1Q8N3D4 1523 aa13.46□□□□□ -0.25
PALB2-206ENST00000568219 NCAPD3P42695 1498 aa13.46□□□□□ -0.25
PALB2-206ENST00000568219 CFAP70Q5T0N1 1121 aa13.46□□□□□ -0.25
PALB2-206ENST00000568219 SLC12A5Q9H2X9 1139 aa13.46□□□□□ -0.25
PALB2-206ENST00000568219 GAPVD1Q14C86 1478 aa13.46□□□□□ -0.25
PALB2-206ENST00000568219 ERBINQ96RT1 1412 aa13.46□□□□□ -0.26
PALB2-206ENST00000568219 EFCAB5A4FU69 1503 aa13.46□□□□□ -0.26
PALB2-206ENST00000568219 ST18O60284 1047 aa13.46□□□□□ -0.26
PALB2-206ENST00000568219 SUPT6HQ7KZ85 1726 aaKnown RBP13.45□□□□□ -0.26
PALB2-206ENST00000568219 GAS2L3Q86XJ1 694 aa13.45□□□□□ -0.26
PALB2-206ENST00000568219 BIVM-ERCC5R4GMW8 1640 aa13.45□□□□□ -0.26
PALB2-206ENST00000568219 K7ELQ4 463 aaPredicted RBP13.45□□□□□ -0.26
PALB2-206ENST00000568219 RIPK4P57078 832 aa13.45□□□□□ -0.26
PALB2-206ENST00000568219 MAPK8IP2Q13387 824 aaPredicted RBP13.44□□□□□ -0.26
PALB2-206ENST00000568219 CHMP3Q9Y3E7 222 aa13.44□□□□□ -0.26
PALB2-206ENST00000568219 CBX1P83916 185 aa13.44□□□□□ -0.26
PALB2-206ENST00000568219 NKTRP30414 1462 aaKnown RBP13.44□□□□□ -0.26
PALB2-206ENST00000568219 SYCE3A1L190 88 aa13.43□□□□□ -0.26
PALB2-206ENST00000568219 PLEKHG5O94827 1062 aa13.43□□□□□ -0.26
PALB2-206ENST00000568219 RBM27Q9P2N5 1060 aaKnown RBP13.43□□□□□ -0.26
PALB2-206ENST00000568219 ISY1Q9ULR0 285 aaKnown RBP13.43□□□□□ -0.26
PALB2-206ENST00000568219 CSPP1Q1MSJ5 1256 aa13.43□□□□□ -0.26
PALB2-206ENST00000568219 SOX12O15370 315 aa13.42□□□□□ -0.26
PALB2-206ENST00000568219 TMEM57Q8N5G2 664 aa13.42□□□□□ -0.26
PALB2-206ENST00000568219 MAP7D2Q96T17 732 aa13.42□□□□□ -0.26
PALB2-206ENST00000568219 ROCK1Q13464 1354 aa13.42□□□□□ -0.26
PALB2-206ENST00000568219 TRIM6-TRIM34B2RNG4 842 aa13.42□□□□□ -0.26
PALB2-206ENST00000568219 NUCB2P80303 420 aa13.42□□□□□ -0.26
PALB2-206ENST00000568219 EPRSP07814 1512 aaKnown RBP13.42□□□□□ -0.26
PALB2-206ENST00000568219 JPH4Q96JJ6 628 aa13.42□□□□□ -0.26
PALB2-206ENST00000568219 STAG3Q9UJ98 1225 aa13.42□□□□□ -0.26
PALB2-206ENST00000568219 SLC4A10Q6U841 1118 aa13.41□□□□□ -0.26
PALB2-206ENST00000568219 ZNF771Q7L3S4 317 aaPredicted RBP13.41□□□□□ -0.26
PALB2-206ENST00000568219 TESK2Q96S53 571 aa13.41□□□□□ -0.26
PALB2-206ENST00000568219 PEG3Q9GZU2 1588 aa13.41□□□□□ -0.26
PALB2-206ENST00000568219 TEX14Q8IWB6 1497 aa13.41□□□□□ -0.26
PALB2-206ENST00000568219 USP19O94966 1318 aa13.41□□□□□ -0.26
PALB2-206ENST00000568219 CHMP4BQ9H444 224 aaKnown RBP13.41□□□□□ -0.26
PALB2-206ENST00000568219 TAOK2Q9UL54 1235 aa13.41□□□□□ -0.26
PALB2-206ENST00000568219 ERBB4Q15303 1308 aa13.41□□□□□ -0.26
PALB2-206ENST00000568219 SYAP1Q96A49 352 aaPredicted RBP13.41□□□□□ -0.26
PALB2-206ENST00000568219 ANTXR1Q9H6X2 564 aa13.41□□□□□ -0.26
PALB2-206ENST00000568219 FAM177BA6PVY3 158 aa13.4□□□□□ -0.26
PALB2-206ENST00000568219 KIF3BO15066 747 aa13.4□□□□□ -0.26
PALB2-206ENST00000568219 TMEM132EQ6IEE7 984 aa13.4□□□□□ -0.26
PALB2-206ENST00000568219 CHD1LQ86WJ1 897 aa13.4□□□□□ -0.26
PALB2-206ENST00000568219 SSH1Q8WYL5 1049 aa13.4□□□□□ -0.26
PALB2-206ENST00000568219 POLA1P09884 1462 aaPredicted RBP13.4□□□□□ -0.26
PALB2-206ENST00000568219 ATF7IPQ6VMQ6 1270 aa13.4□□□□□ -0.26
PALB2-206ENST00000568219 GGNBP2Q9H3C7 697 aa13.4□□□□□ -0.26
PALB2-206ENST00000568219 BICRAQ9NZM4 1560 aa13.4□□□□□ -0.26
PALB2-206ENST00000568219 IGSF3O75054 1194 aa13.39□□□□□ -0.27
PALB2-206ENST00000568219 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.39□□□□□ -0.27
PALB2-206ENST00000568219 BAG4O95429 457 aaKnown RBP13.39□□□□□ -0.27
PALB2-206ENST00000568219 RILPL2Q969X0 211 aa13.39□□□□□ -0.27
PALB2-206ENST00000568219 NGEFQ8N5V2 710 aa13.39□□□□□ -0.27
PALB2-206ENST00000568219 ZNF830Q96NB3 372 aaPredicted RBP13.39□□□□□ -0.27
PALB2-206ENST00000568219 CCDC39Q9UFE4 941 aa13.39□□□□□ -0.27
PALB2-206ENST00000568219 TRIM27P14373 513 aa13.38□□□□□ -0.27
PALB2-206ENST00000568219 FSD2A1L4K1 749 aa13.38□□□□□ -0.27
PALB2-206ENST00000568219 GOLGA6L4A6NEF3 574 aa13.38□□□□□ -0.27
PALB2-206ENST00000568219 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms