RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 PXYLP1Q8TE99 480 aa11.42□□□□□ -0.58
CHD9-212ENST00000564641 GPR37O15354 613 aa11.41□□□□□ -0.58
CHD9-212ENST00000564641 APLP1P51693 650 aa11.41□□□□□ -0.58
CHD9-212ENST00000564641 TJAP1Q5JTD0 557 aa11.41□□□□□ -0.58
CHD9-212ENST00000564641 FAM161AQ3B820 660 aa11.4□□□□□ -0.58
CHD9-212ENST00000564641 METTL3Q86U44 580 aaKnown RBP11.4□□□□□ -0.58
CHD9-212ENST00000564641 MTRQ99707 1265 aa11.4□□□□□ -0.58
CHD9-212ENST00000564641 RSPH4AQ5TD94 716 aa11.39□□□□□ -0.59
CHD9-212ENST00000564641 KMT5BQ4FZB7 885 aa11.37□□□□□ -0.59
CHD9-212ENST00000564641 FECHP22830 423 aa11.35□□□□□ -0.59
CHD9-212ENST00000564641 PCDHB3Q9Y5E6 796 aa11.33□□□□□ -0.6
CHD9-212ENST00000564641 ACTN4O43707 911 aaKnown RBP11.32□□□□□ -0.6
CHD9-212ENST00000564641 DAXXQ9UER7 740 aaPredicted RBP11.32□□□□□ -0.6
CHD9-212ENST00000564641 CFHP08603 1231 aa11.3□□□□□ -0.6
CHD9-212ENST00000564641 ZPR1O75312 459 aa11.29□□□□□ -0.6
CHD9-212ENST00000564641 GGCXP38435 758 aa11.29□□□□□ -0.6
CHD9-212ENST00000564641 COPS2P61201 443 aa11.29□□□□□ -0.6
CHD9-212ENST00000564641 MAP2K5Q13163 448 aa11.29□□□□□ -0.6
CHD9-212ENST00000564641 SULF1Q8IWU6 871 aa11.29□□□□□ -0.6
CHD9-212ENST00000564641 SLC10A3P09131 477 aa11.28□□□□□ -0.6
CHD9-212ENST00000564641 ZNF516Q92618 1163 aa11.28□□□□□ -0.6
CHD9-212ENST00000564641 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.26□□□□□ -0.61
CHD9-212ENST00000564641 MINK1Q8N4C8 1332 aaPredicted RBP11.26□□□□□ -0.61
CHD9-212ENST00000564641 IRF6O14896 467 aa11.24□□□□□ -0.61
CHD9-212ENST00000564641 NR1I2O75469 434 aa11.24□□□□□ -0.61
CHD9-212ENST00000564641 PPP1R18Q6NYC8 613 aa11.24□□□□□ -0.61
CHD9-212ENST00000564641 BLOC1S3Q6QNY0 202 aa11.24□□□□□ -0.61
CHD9-212ENST00000564641 TMUB1Q9BVT8 246 aa11.24□□□□□ -0.61
CHD9-212ENST00000564641 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.24□□□□□ -0.61
CHD9-212ENST00000564641 RDH13Q8NBN7 331 aa11.23□□□□□ -0.61
CHD9-212ENST00000564641 PHOX2BQ99453 314 aa11.22□□□□□ -0.61
CHD9-212ENST00000564641 IRX2Q9BZI1 471 aaPredicted RBP11.22□□□□□ -0.61
CHD9-212ENST00000564641 DDX11L8A8MPP1 907 aa11.21□□□□□ -0.61
CHD9-212ENST00000564641 LMOD2Q6P5Q4 547 aa11.2□□□□□ -0.62
CHD9-212ENST00000564641 NKX2-3Q8TAU0 364 aa11.2□□□□□ -0.62
CHD9-212ENST00000564641 V9GY48 417 aaPredicted RBP11.18□□□□□ -0.62
CHD9-212ENST00000564641 GCGRP47871 477 aa11.17□□□□□ -0.62
CHD9-212ENST00000564641 GRIPAP1Q4V328 841 aa11.16□□□□□ -0.62
CHD9-212ENST00000564641 SCUBE3Q8IX30 993 aa11.16□□□□□ -0.62
CHD9-212ENST00000564641 NLRP7Q8WX94 980 aa11.16□□□□□ -0.62
CHD9-212ENST00000564641 ADH1BP00325 375 aa11.15□□□□□ -0.62
CHD9-212ENST00000564641 ATP6V1AP38606 617 aa11.15□□□□□ -0.62
CHD9-212ENST00000564641 CCDC102AQ96A19 550 aa11.14□□□□□ -0.63
CHD9-212ENST00000564641 PRKD2Q9BZL6 878 aa11.14□□□□□ -0.63
CHD9-212ENST00000564641 LAPTM4AQ15012 233 aa11.13□□□□□ -0.63
CHD9-212ENST00000564641 CLCN1P35523 988 aa11.12□□□□□ -0.63
CHD9-212ENST00000564641 FUT2Q10981 343 aa11.12□□□□□ -0.63
CHD9-212ENST00000564641 MORN1Q5T089 497 aa11.12□□□□□ -0.63
CHD9-212ENST00000564641 TLL1O43897 1013 aa11.11□□□□□ -0.63
CHD9-212ENST00000564641 PUS10Q3MIT2 529 aaKnown RBP11.11□□□□□ -0.63
CHD9-212ENST00000564641 KRI1Q8N9T8 703 aaKnown RBP11.11□□□□□ -0.63
CHD9-212ENST00000564641 GPCPD1Q9NPB8 672 aa11.11□□□□□ -0.63
CHD9-212ENST00000564641 RNF223E7ERA6 249 aa11.1□□□□□ -0.63
CHD9-212ENST00000564641 ZMYND10O75800 440 aa11.1□□□□□ -0.63
CHD9-212ENST00000564641 CD46P15529 392 aa11.1□□□□□ -0.63
CHD9-212ENST00000564641 MDM2Q00987 491 aaPredicted RBP11.1□□□□□ -0.63
CHD9-212ENST00000564641 BARGINQ6ZT62 677 aa11.1□□□□□ -0.63
CHD9-212ENST00000564641 ANKLE1Q8NAG6 615 aa11.1□□□□□ -0.63
CHD9-212ENST00000564641 SPSB2Q99619 263 aa11.1□□□□□ -0.63
CHD9-212ENST00000564641 SALL2Q9Y467 1007 aaPredicted RBP11.1□□□□□ -0.63
CHD9-212ENST00000564641 SLC6A16Q9GZN6 736 aa11.09□□□□□ -0.63
CHD9-212ENST00000564641 S1PR4O95977 384 aa11.07□□□□□ -0.64
CHD9-212ENST00000564641 USP46P62068 366 aa11.07□□□□□ -0.64
CHD9-212ENST00000564641 ZC3H15Q8WU90 426 aaKnown RBP11.07□□□□□ -0.64
CHD9-212ENST00000564641 FMNL1O95466 1100 aaPredicted RBP11.06□□□□□ -0.64
CHD9-212ENST00000564641 KDM4AO75164 1064 aa11.05□□□□□ -0.64
CHD9-212ENST00000564641 Q3C1V9 767 aa11.05□□□□□ -0.64
CHD9-212ENST00000564641 SLC27A5Q9Y2P5 690 aa11.05□□□□□ -0.64
CHD9-212ENST00000564641 THAP11Q96EK4 314 aa11.04□□□□□ -0.64
CHD9-212ENST00000564641 SLC19A1P41440 591 aa11.03□□□□□ -0.64
CHD9-212ENST00000564641 FAM217BQ9NTX9 383 aaPredicted RBP11.03□□□□□ -0.64
CHD9-212ENST00000564641 GFRA3O60609 400 aa11.02□□□□□ -0.65
CHD9-212ENST00000564641 BRICD5Q6PL45 260 aa11.01□□□□□ -0.65
CHD9-212ENST00000564641 AMHR2Q16671 573 aa11□□□□□ -0.65
CHD9-212ENST00000564641 NRG2O14511 850 aaPredicted RBP10.99□□□□□ -0.65
CHD9-212ENST00000564641 MSS51Q4VC12 460 aa10.99□□□□□ -0.65
CHD9-212ENST00000564641 Q6ZNB5 142 aa10.99□□□□□ -0.65
CHD9-212ENST00000564641 PPEF1O14829 653 aaPredicted RBP10.98□□□□□ -0.65
CHD9-212ENST00000564641 TTLL12Q14166 644 aaPredicted RBP10.98□□□□□ -0.65
CHD9-212ENST00000564641 SPRYD7Q5W111 196 aa10.97□□□□□ -0.65
CHD9-212ENST00000564641 ZNF598Q86UK7 904 aaKnown RBP10.97□□□□□ -0.65
CHD9-212ENST00000564641 NUTM1Q86Y26 1132 aa10.97□□□□□ -0.65
CHD9-212ENST00000564641 HOXA2O43364 376 aa10.96□□□□□ -0.65
CHD9-212ENST00000564641 FAM160A2Q8N612 972 aaPredicted RBP10.96□□□□□ -0.65
CHD9-212ENST00000564641 PDZRN3Q9UPQ7 1066 aa10.96□□□□□ -0.65
CHD9-212ENST00000564641 SSTR3P32745 418 aaPredicted RBP10.95□□□□□ -0.66
CHD9-212ENST00000564641 RNF19BQ6ZMZ0 732 aa10.94□□□□□ -0.66
CHD9-212ENST00000564641 EMID1Q96A84 441 aaPredicted RBP10.94□□□□□ -0.66
CHD9-212ENST00000564641 AK7Q96M32 723 aa10.94□□□□□ -0.66
CHD9-212ENST00000564641 RPIAP49247 311 aa10.93□□□□□ -0.66
CHD9-212ENST00000564641 LIAT1Q6ZQX7 453 aa10.93□□□□□ -0.66
CHD9-212ENST00000564641 USB1Q9BQ65 265 aaKnown RBP10.93□□□□□ -0.66
CHD9-212ENST00000564641 REPIN1Q9BWE0 567 aaKnown RBP10.92□□□□□ -0.66
CHD9-212ENST00000564641 FCF1Q9Y324 198 aaKnown RBP10.92□□□□□ -0.66
CHD9-212ENST00000564641 PRR20EP86478 221 aa10.91□□□□□ -0.66
CHD9-212ENST00000564641 PRR20CP86479 221 aa10.91□□□□□ -0.66
CHD9-212ENST00000564641 PRR20DP86480 221 aa10.91□□□□□ -0.66
CHD9-212ENST00000564641 PRR20BP86481 221 aa10.91□□□□□ -0.66
CHD9-212ENST00000564641 PRR20AP86496 221 aa10.91□□□□□ -0.66
CHD9-212ENST00000564641 ZNF697Q5TEC3 545 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms