RNA–Protein interactions for RNA: ENST00000564540.5

UBR1-205, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 735 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-205ENST00000564540 SWT1Q5T5J6 900 aaKnown RBP11.97□□□□□ -0.49
UBR1-205ENST00000564540 HPS5Q9UPZ3 1129 aa11.96□□□□□ -0.49
UBR1-205ENST00000564540 RNF40O75150 1001 aa11.95□□□□□ -0.5
UBR1-205ENST00000564540 DNAJB2P25686 324 aa11.95□□□□□ -0.5
UBR1-205ENST00000564540 MAP2K5Q13163 448 aa11.95□□□□□ -0.5
UBR1-205ENST00000564540 NLRP7Q8WX94 980 aa11.95□□□□□ -0.5
UBR1-205ENST00000564540 HDGFP51858 240 aaKnown RBP11.94□□□□□ -0.5
UBR1-205ENST00000564540 TRAF7Q6Q0C0 670 aa11.94□□□□□ -0.5
UBR1-205ENST00000564540 PHOX2BQ99453 314 aa11.94□□□□□ -0.5
UBR1-205ENST00000564540 TMEM134Q9H6X4 195 aa11.94□□□□□ -0.5
UBR1-205ENST00000564540 TSR3Q9UJK0 312 aaKnown RBP11.93□□□□□ -0.5
UBR1-205ENST00000564540 IRF6O14896 467 aa11.92□□□□□ -0.5
UBR1-205ENST00000564540 ZMYND10O75800 440 aa11.92□□□□□ -0.5
UBR1-205ENST00000564540 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.91□□□□□ -0.5
UBR1-205ENST00000564540 MINK1Q8N4C8 1332 aaPredicted RBP11.9□□□□□ -0.5
UBR1-205ENST00000564540 GFRA3O60609 400 aa11.9□□□□□ -0.5
UBR1-205ENST00000564540 PPP4CP60510 307 aa11.9□□□□□ -0.5
UBR1-205ENST00000564540 BARGINQ6ZT62 677 aa11.9□□□□□ -0.5
UBR1-205ENST00000564540 CCDC102AQ96A19 550 aa11.9□□□□□ -0.5
UBR1-205ENST00000564540 SLF2Q8IX21 1173 aa11.88□□□□□ -0.51
UBR1-205ENST00000564540 KRI1Q8N9T8 703 aaKnown RBP11.88□□□□□ -0.51
UBR1-205ENST00000564540 NRG2O14511 850 aaPredicted RBP11.85□□□□□ -0.51
UBR1-205ENST00000564540 SLC4A3P48751 1232 aa11.83□□□□□ -0.52
UBR1-205ENST00000564540 SLC10A3P09131 477 aa11.82□□□□□ -0.52
UBR1-205ENST00000564540 APLP1P51693 650 aa11.82□□□□□ -0.52
UBR1-205ENST00000564540 DAXXQ9UER7 740 aaPredicted RBP11.81□□□□□ -0.52
UBR1-205ENST00000564540 MDM2Q00987 491 aaPredicted RBP11.8□□□□□ -0.52
UBR1-205ENST00000564540 TJAP1Q5JTD0 557 aa11.8□□□□□ -0.52
UBR1-205ENST00000564540 V9GY48 417 aaPredicted RBP11.8□□□□□ -0.52
UBR1-205ENST00000564540 PRKD2Q9BZL6 878 aa11.79□□□□□ -0.52
UBR1-205ENST00000564540 DDX11L8A8MPP1 907 aa11.78□□□□□ -0.52
UBR1-205ENST00000564540 CFHP08603 1231 aa11.77□□□□□ -0.53
UBR1-205ENST00000564540 NECTIN2Q92692 538 aa11.77□□□□□ -0.53
UBR1-205ENST00000564540 RDH13Q8NBN7 331 aa11.75□□□□□ -0.53
UBR1-205ENST00000564540 SLC24A3Q9HC58 644 aa11.75□□□□□ -0.53
UBR1-205ENST00000564540 REPIN1Q9BWE0 567 aaKnown RBP11.73□□□□□ -0.53
UBR1-205ENST00000564540 TRIM66O15016 1216 aa11.72□□□□□ -0.53
UBR1-205ENST00000564540 SULF1Q8IWU6 871 aa11.72□□□□□ -0.53
UBR1-205ENST00000564540 AK7Q96M32 723 aa11.72□□□□□ -0.53
UBR1-205ENST00000564540 MTRQ99707 1265 aa11.72□□□□□ -0.53
UBR1-205ENST00000564540 RSPH4AQ5TD94 716 aa11.71□□□□□ -0.53
UBR1-205ENST00000564540 PPP1R18Q6NYC8 613 aa11.71□□□□□ -0.53
UBR1-205ENST00000564540 TMUB1Q9BVT8 246 aa11.71□□□□□ -0.53
UBR1-205ENST00000564540 IL21Q9HBE4 155 aa11.71□□□□□ -0.53
UBR1-205ENST00000564540 GPCPD1Q9NPB8 672 aa11.71□□□□□ -0.53
UBR1-205ENST00000564540 CLCN1P35523 988 aa11.7□□□□□ -0.54
UBR1-205ENST00000564540 COPS2P61201 443 aa11.7□□□□□ -0.54
UBR1-205ENST00000564540 AMHR2Q16671 573 aa11.7□□□□□ -0.54
UBR1-205ENST00000564540 KMT5BQ4FZB7 885 aa11.7□□□□□ -0.54
UBR1-205ENST00000564540 PRR14Q9BWN1 585 aa11.7□□□□□ -0.54
UBR1-205ENST00000564540 ACTN4O43707 911 aaKnown RBP11.69□□□□□ -0.54
UBR1-205ENST00000564540 TTLL12Q14166 644 aaPredicted RBP11.69□□□□□ -0.54
UBR1-205ENST00000564540 ZNF787Q6DD87 383 aa11.69□□□□□ -0.54
UBR1-205ENST00000564540 PCDHB3Q9Y5E6 796 aa11.69□□□□□ -0.54
UBR1-205ENST00000564540 CD46P15529 392 aa11.67□□□□□ -0.54
UBR1-205ENST00000564540 GCGRP47871 477 aa11.67□□□□□ -0.54
UBR1-205ENST00000564540 BLOC1S3Q6QNY0 202 aa11.67□□□□□ -0.54
UBR1-205ENST00000564540 ZNF516Q92618 1163 aa11.67□□□□□ -0.54
UBR1-205ENST00000564540 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.67□□□□□ -0.54
UBR1-205ENST00000564540 FAM217BQ9NTX9 383 aaPredicted RBP11.67□□□□□ -0.54
UBR1-205ENST00000564540 PARP9Q8IXQ6 854 aa11.65□□□□□ -0.54
UBR1-205ENST00000564540 FUT2Q10981 343 aa11.64□□□□□ -0.55
UBR1-205ENST00000564540 PUS10Q3MIT2 529 aaKnown RBP11.64□□□□□ -0.55
UBR1-205ENST00000564540 GIGYF2Q6Y7W6 1299 aaKnown RBP11.64□□□□□ -0.55
UBR1-205ENST00000564540 PDZRN3Q9UPQ7 1066 aa11.64□□□□□ -0.55
UBR1-205ENST00000564540 ZNF775Q96BV0 537 aaPredicted RBP11.63□□□□□ -0.55
UBR1-205ENST00000564540 SSTR3P32745 418 aaPredicted RBP11.62□□□□□ -0.55
UBR1-205ENST00000564540 PDE4DQ08499 809 aa11.62□□□□□ -0.55
UBR1-205ENST00000564540 NKX2-3Q8TAU0 364 aa11.61□□□□□ -0.55
UBR1-205ENST00000564540 ZPR1O75312 459 aa11.6□□□□□ -0.55
UBR1-205ENST00000564540 TPRNQ4KMQ1 711 aa11.6□□□□□ -0.55
UBR1-205ENST00000564540 TLL1O43897 1013 aa11.58□□□□□ -0.56
UBR1-205ENST00000564540 ATP6V1AP38606 617 aa11.58□□□□□ -0.56
UBR1-205ENST00000564540 KDM4AO75164 1064 aa11.57□□□□□ -0.56
UBR1-205ENST00000564540 MS4A1P11836 297 aa11.57□□□□□ -0.56
UBR1-205ENST00000564540 MORN1Q5T089 497 aa11.57□□□□□ -0.56
UBR1-205ENST00000564540 NR1I2O75469 434 aa11.56□□□□□ -0.56
UBR1-205ENST00000564540 SCUBE3Q8IX30 993 aa11.56□□□□□ -0.56
UBR1-205ENST00000564540 HLA-CQ95604 372 aa11.55□□□□□ -0.56
UBR1-205ENST00000564540 SLC27A5Q9Y2P5 690 aa11.55□□□□□ -0.56
UBR1-205ENST00000564540 GGCXP38435 758 aa11.54□□□□□ -0.56
UBR1-205ENST00000564540 BEGAINQ9BUH8 593 aa11.54□□□□□ -0.56
UBR1-205ENST00000564540 NUTM1Q86Y26 1132 aa11.52□□□□□ -0.57
UBR1-205ENST00000564540 HOXA2O43364 376 aa11.51□□□□□ -0.57
UBR1-205ENST00000564540 GRIPAP1Q4V328 841 aa11.51□□□□□ -0.57
UBR1-205ENST00000564540 GPBP1L1Q9HC44 474 aaPredicted RBP11.51□□□□□ -0.57
UBR1-205ENST00000564540 USP46P62068 366 aa11.5□□□□□ -0.57
UBR1-205ENST00000564540 GUCA2AQ02747 115 aa11.5□□□□□ -0.57
UBR1-205ENST00000564540 TRIM67Q6ZTA4 783 aa11.5□□□□□ -0.57
UBR1-205ENST00000564540 SPIRE2Q8WWL2 714 aa11.5□□□□□ -0.57
UBR1-205ENST00000564540 ADH1BP00325 375 aa11.48□□□□□ -0.57
UBR1-205ENST00000564540 THAP11Q96EK4 314 aa11.48□□□□□ -0.57
UBR1-205ENST00000564540 SPSB2Q99619 263 aa11.48□□□□□ -0.57
UBR1-205ENST00000564540 PRKCSHP14314 528 aaPredicted RBP11.47□□□□□ -0.57
UBR1-205ENST00000564540 RNF19BQ6ZMZ0 732 aa11.47□□□□□ -0.57
UBR1-205ENST00000564540 KDM4CQ9H3R0 1056 aa11.46□□□□□ -0.57
UBR1-205ENST00000564540 S1PR4O95977 384 aa11.45□□□□□ -0.58
UBR1-205ENST00000564540 NDUFV2P19404 249 aa11.45□□□□□ -0.58
UBR1-205ENST00000564540 BRICD5Q6PL45 260 aa11.45□□□□□ -0.58
UBR1-205ENST00000564540 TBC1D2Q9BYX2 928 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms