RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CHD2O14647 1828 aaKnown RBP11.53□□□□□ -0.56
VPS4A-203ENST00000564399 CROCC2H7BZ55 1655 aa11.52□□□□□ -0.56
VPS4A-203ENST00000564399 ABCC5O15440 1437 aa11.52□□□□□ -0.56
VPS4A-203ENST00000564399 ADGRB3O60242 1522 aa11.52□□□□□ -0.57
VPS4A-203ENST00000564399 HDGFP51858 240 aaKnown RBP11.52□□□□□ -0.57
VPS4A-203ENST00000564399 SLC52A1Q9NWF4 448 aa11.52□□□□□ -0.57
VPS4A-203ENST00000564399 CHIC2Q9UKJ5 165 aa11.52□□□□□ -0.57
VPS4A-203ENST00000564399 COL16A1Q07092 1604 aaPredicted RBP11.52□□□□□ -0.57
VPS4A-203ENST00000564399 MYO5BQ9ULV0 1848 aa11.51□□□□□ -0.57
VPS4A-203ENST00000564399 LRP6O75581 1613 aa11.51□□□□□ -0.57
VPS4A-203ENST00000564399 RXRBP28702 533 aa11.51□□□□□ -0.57
VPS4A-203ENST00000564399 FGD6Q6ZV73 1430 aa11.51□□□□□ -0.57
VPS4A-203ENST00000564399 LMTK2Q8IWU2 1503 aa11.5□□□□□ -0.57
VPS4A-203ENST00000564399 NUTM2BA6NNL0 878 aaPredicted RBP11.5□□□□□ -0.57
VPS4A-203ENST00000564399 NUTM2EB1AL46 878 aaPredicted RBP11.5□□□□□ -0.57
VPS4A-203ENST00000564399 ATF3P18847 181 aa11.5□□□□□ -0.57
VPS4A-203ENST00000564399 NUTM2AQ8IVF1 878 aaPredicted RBP11.5□□□□□ -0.57
VPS4A-203ENST00000564399 ANKRD30AQ9BXX3 1397 aa11.5□□□□□ -0.57
VPS4A-203ENST00000564399 NOS1P29475 1434 aa11.5□□□□□ -0.57
VPS4A-203ENST00000564399 DAPK1P53355 1430 aa11.5□□□□□ -0.57
VPS4A-203ENST00000564399 PTPN23Q9H3S7 1636 aa11.49□□□□□ -0.57
VPS4A-203ENST00000564399 CADPS2Q86UW7 1296 aa11.49□□□□□ -0.57
VPS4A-203ENST00000564399 PLEKHG1Q9ULL1 1385 aa11.49□□□□□ -0.57
VPS4A-203ENST00000564399 CHGAP10645 457 aaKnown RBP11.48□□□□□ -0.57
VPS4A-203ENST00000564399 TBX22Q9Y458 520 aa11.48□□□□□ -0.57
VPS4A-203ENST00000564399 RIMS2Q9UQ26 1411 aa11.48□□□□□ -0.57
VPS4A-203ENST00000564399 SHPRHQ149N8 1683 aa11.47□□□□□ -0.57
VPS4A-203ENST00000564399 NCOA3Q9Y6Q9 1424 aa11.47□□□□□ -0.57
VPS4A-203ENST00000564399 APLP2Q06481 763 aa11.47□□□□□ -0.57
VPS4A-203ENST00000564399 C19orf44Q9H6X5 657 aa11.47□□□□□ -0.57
VPS4A-203ENST00000564399 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.46□□□□□ -0.57
VPS4A-203ENST00000564399 GCC2Q8IWJ2 1684 aa11.46□□□□□ -0.57
VPS4A-203ENST00000564399 ZFYVE9O95405 1425 aa11.46□□□□□ -0.57
VPS4A-203ENST00000564399 NUTM2DQ5VT03 806 aaPredicted RBP11.46□□□□□ -0.57
VPS4A-203ENST00000564399 AHDC1Q5TGY3 1603 aaPredicted RBP11.46□□□□□ -0.58
VPS4A-203ENST00000564399 AFF2P51816 1311 aa11.45□□□□□ -0.58
VPS4A-203ENST00000564399 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.45□□□□□ -0.58
VPS4A-203ENST00000564399 LOC105371045A0A1W2PR82 267 aa11.44□□□□□ -0.58
VPS4A-203ENST00000564399 BRINP3Q76B58 766 aa11.43□□□□□ -0.58
VPS4A-203ENST00000564399 RPRD2Q5VT52 1461 aaKnown RBP11.43□□□□□ -0.58
VPS4A-203ENST00000564399 CDK12Q9NYV4 1490 aaPredicted RBP11.43□□□□□ -0.58
VPS4A-203ENST00000564399 TMEM131LA2VDJ0 1609 aa11.42□□□□□ -0.58
VPS4A-203ENST00000564399 AMOTL2Q9Y2J4 779 aa11.42□□□□□ -0.58
VPS4A-203ENST00000564399 C8orf37Q96NL8 207 aa11.41□□□□□ -0.58
VPS4A-203ENST00000564399 QTRT2Q9H974 415 aaKnown RBP11.41□□□□□ -0.58
VPS4A-203ENST00000564399 ADAMTS13Q76LX8 1427 aa11.41□□□□□ -0.58
VPS4A-203ENST00000564399 PIK3R4Q99570 1358 aa11.41□□□□□ -0.58
VPS4A-203ENST00000564399 RBM6P78332 1123 aaKnown RBP11.4□□□□□ -0.58
VPS4A-203ENST00000564399 LRRC59Q96AG4 307 aaKnown RBP11.4□□□□□ -0.58
VPS4A-203ENST00000564399 ANKRD50Q9ULJ7 1429 aa11.4□□□□□ -0.58
VPS4A-203ENST00000564399 DIP2AQ14689 1571 aa11.4□□□□□ -0.58
VPS4A-203ENST00000564399 FAM50AQ14320 339 aaKnown RBP11.39□□□□□ -0.59
VPS4A-203ENST00000564399 TRPM2O94759 1503 aa11.38□□□□□ -0.59
VPS4A-203ENST00000564399 ADGRL2O95490 1459 aa11.38□□□□□ -0.59
VPS4A-203ENST00000564399 RGS12O14924 1447 aa11.37□□□□□ -0.59
VPS4A-203ENST00000564399 SETD5Q9C0A6 1442 aa11.37□□□□□ -0.59
VPS4A-203ENST00000564399 ASXL1Q8IXJ9 1541 aa11.37□□□□□ -0.59
VPS4A-203ENST00000564399 NGLY1Q96IV0 654 aa11.37□□□□□ -0.59
VPS4A-203ENST00000564399 DCCP43146 1447 aa11.36□□□□□ -0.59
VPS4A-203ENST00000564399 PTPRUQ92729 1446 aa11.36□□□□□ -0.59
VPS4A-203ENST00000564399 ADAMTS2O95450 1211 aa11.36□□□□□ -0.59
VPS4A-203ENST00000564399 DDX17Q92841 729 aaKnown RBP11.36□□□□□ -0.59
VPS4A-203ENST00000564399 FOXD1Q16676 465 aa11.35□□□□□ -0.59
VPS4A-203ENST00000564399 NHSL1Q5SYE7 1610 aa11.35□□□□□ -0.59
VPS4A-203ENST00000564399 MST1RQ04912 1400 aa11.35□□□□□ -0.59
VPS4A-203ENST00000564399 E9PCH4 1651 aa11.34□□□□□ -0.59
VPS4A-203ENST00000564399 ATAD2Q6PL18 1390 aa11.34□□□□□ -0.59
VPS4A-203ENST00000564399 PNPLA6Q8IY17 1366 aa11.34□□□□□ -0.59
VPS4A-203ENST00000564399 ZRANB1Q9UGI0 708 aa11.34□□□□□ -0.59
VPS4A-203ENST00000564399 UNC13BO14795 1591 aa11.33□□□□□ -0.6
VPS4A-203ENST00000564399 ZNF326Q5BKZ1 582 aaKnown RBP11.32□□□□□ -0.6
VPS4A-203ENST00000564399 USP21Q9UK80 565 aa11.32□□□□□ -0.6
VPS4A-203ENST00000564399 XRN1Q8IZH2 1706 aaKnown RBP11.32□□□□□ -0.6
VPS4A-203ENST00000564399 TRPC5Q9UL62 973 aaPredicted RBP11.31□□□□□ -0.6
VPS4A-203ENST00000564399 SRCAPQ6ZRS2 3230 aa11.3□□□□□ -0.6
VPS4A-203ENST00000564399 METP08581 1390 aa11.29□□□□□ -0.6
VPS4A-203ENST00000564399 ADGRL3Q9HAR2 1447 aa11.29□□□□□ -0.6
VPS4A-203ENST00000564399 NRXN3Q9Y4C0 1643 aa11.29□□□□□ -0.6
VPS4A-203ENST00000564399 NUP155O75694 1391 aa11.28□□□□□ -0.6
VPS4A-203ENST00000564399 IQGAP3Q86VI3 1631 aa11.28□□□□□ -0.6
VPS4A-203ENST00000564399 SETBP1Q9Y6X0 1596 aa11.28□□□□□ -0.6
VPS4A-203ENST00000564399 C1orf167Q5SNV9 1468 aa11.27□□□□□ -0.6
VPS4A-203ENST00000564399 NALCNQ8IZF0 1738 aa11.27□□□□□ -0.61
VPS4A-203ENST00000564399 CCDC125Q86Z20 511 aa11.26□□□□□ -0.61
VPS4A-203ENST00000564399 ORAI2Q96SN7 254 aa11.26□□□□□ -0.61
VPS4A-203ENST00000564399 FNBP4Q8N3X1 1017 aaPredicted RBP11.25□□□□□ -0.61
VPS4A-203ENST00000564399 SOS2Q07890 1332 aaPredicted RBP11.25□□□□□ -0.61
VPS4A-203ENST00000564399 PTCH1Q13635 1447 aa11.25□□□□□ -0.61
VPS4A-203ENST00000564399 SPHKAPQ2M3C7 1700 aa11.24□□□□□ -0.61
VPS4A-203ENST00000564399 ITGAEP38570 1179 aa11.24□□□□□ -0.61
VPS4A-203ENST00000564399 ATRNO75882 1429 aa11.24□□□□□ -0.61
VPS4A-203ENST00000564399 ROCK1Q13464 1354 aa11.23□□□□□ -0.61
VPS4A-203ENST00000564399 LAMC1P11047 1609 aa11.22□□□□□ -0.61
VPS4A-203ENST00000564399 GJD4Q96KN9 370 aaPredicted RBP11.21□□□□□ -0.61
VPS4A-203ENST00000564399 KIF1BO60333 1816 aa11.21□□□□□ -0.62
VPS4A-203ENST00000564399 ESCO1Q5FWF5 840 aa11.2□□□□□ -0.62
VPS4A-203ENST00000564399 NEXMIFQ5QGS0 1516 aa11.19□□□□□ -0.62
VPS4A-203ENST00000564399 BCL9LQ86UU0 1499 aa11.19□□□□□ -0.62
VPS4A-203ENST00000564399 ROBO2Q9HCK4 1378 aa11.19□□□□□ -0.62
VPS4A-203ENST00000564399 NPHP3Q7Z494 1330 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms