RNA–Protein interactions for RNA: ENST00000564288.5

MACF1-231, Transcript of microtubule-actin crosslinking factor 1, human

APPRIS ALT2 TSL 5 BASIC

Gene MACF1, Length 24,828 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-231	ENST00000564288	GTF2A1	P52655	376 aa	Predicted RBP	5.2	□□□□□ -1.58
MACF1-231	ENST00000564288	PES1	O00541	588 aa	Known RBP	5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	CARMIL2	Q6F5E8	1435 aa		5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	CASKIN1	Q8WXD9	1431 aa		5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	MYOM3	Q5VTT5	1437 aa		5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	NBPF1	Q3BBV0	1214 aa		5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	ACBD3	Q9H3P7	528 aa		5.19	□□□□□ -1.58
MACF1-231	ENST00000564288		A6NNZ2	444 aa		5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	TUBB8	Q3ZCM7	444 aa		5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	WDR97	A6NE52	1622 aa		5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	HSP90B2P	Q58FF3	399 aa		5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	CGN	Q9P2M7	1197 aa	Known RBP	5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	NOL7	Q9UMY1	257 aa	Known RBP	5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	BRD4	O60885	1362 aa	Predicted RBP	5.19	□□□□□ -1.58
MACF1-231	ENST00000564288	RDX	P35241	583 aa	Known RBP	5.18	□□□□□ -1.58
MACF1-231	ENST00000564288	SSR1	P43307	286 aa	Known RBP	5.18	□□□□□ -1.58
MACF1-231	ENST00000564288	TOP2B	Q02880	1626 aa		5.18	□□□□□ -1.58
MACF1-231	ENST00000564288	REC8	O95072	547 aa		5.18	□□□□□ -1.58
MACF1-231	ENST00000564288	NCBP3	Q53F19	620 aa	Known RBP	5.18	□□□□□ -1.58
MACF1-231	ENST00000564288	CAVIN2	O95810	425 aa		5.18	□□□□□ -1.58
MACF1-231	ENST00000564288	PRX	Q9BXM0	1461 aa		5.18	□□□□□ -1.58
MACF1-231	ENST00000564288	NEMF	O60524	1076 aa		5.18	□□□□□ -1.58
MACF1-231	ENST00000564288	RABEP1	Q15276	862 aa		5.18	□□□□□ -1.58
MACF1-231	ENST00000564288	DAPK1	P53355	1430 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	CCDC88B	A6NC98	1476 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	EHBP1L1	Q8N3D4	1523 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	CBX1	P83916	185 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	NAT10	Q9H0A0	1025 aa	Known RBP	5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	GOLGA6L19	H0YKK7	550 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	KDM2A	Q9Y2K7	1162 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	DDX11	Q96FC9	970 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	CRBN	Q96SW2	442 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	LMOD3	Q0VAK6	560 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	SLC26A8	Q96RN1	970 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	CCDC91	Q7Z6B0	441 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	MPHOSPH9	Q99550	1183 aa		5.17	□□□□□ -1.58
MACF1-231	ENST00000564288	UQCRHL	A0A096LP55	91 aa		5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	UQCRH	P07919	91 aa		5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	CCDC112	Q8NEF3	446 aa		5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	POLR3G	O15318	223 aa	Predicted RBP	5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	MROH2B	Q7Z745	1585 aa		5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	PATL2	C9JE40	543 aa	Known RBP	5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	TSR1	Q2NL82	804 aa	Known RBP	5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	KIF21A	Q7Z4S6	1674 aa		5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	KANK1	Q14678	1352 aa		5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	ZNF622	Q969S3	477 aa	Known RBP eCLIP	5.16	□□□□□ -1.58	4e-7	■■□□□ 14.3
MACF1-231	ENST00000564288	CCDC70	Q6NSX1	233 aa		5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	L3MBTL2	Q969R5	705 aa		5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	ATAD2B	Q9ULI0	1458 aa		5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	GABPB1	Q06547	395 aa	Predicted RBP	5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	KIF18A	Q8NI77	898 aa		5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	ANKRD30B	Q9BXX2	1392 aa		5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	NOLC1	Q14978	699 aa	Known RBP eCLIP	5.16	□□□□□ -1.58
MACF1-231	ENST00000564288	DHX57	Q6P158	1386 aa	Known RBP	5.15	□□□□□ -1.58
MACF1-231	ENST00000564288	PRPF40A	O75400	957 aa	Known RBP	5.15	□□□□□ -1.58
MACF1-231	ENST00000564288	VGF	O15240	615 aa	Predicted RBP	5.15	□□□□□ -1.58
MACF1-231	ENST00000564288	IVL	P07476	585 aa		5.15	□□□□□ -1.58
MACF1-231	ENST00000564288	RAB3GAP2	Q9H2M9	1393 aa		5.15	□□□□□ -1.58
MACF1-231	ENST00000564288	POLA1	P09884	1462 aa	Predicted RBP	5.15	□□□□□ -1.58
MACF1-231	ENST00000564288	CADPS	Q9ULU8	1353 aa		5.15	□□□□□ -1.58
MACF1-231	ENST00000564288	BRD2	P25440	801 aa	Known RBP	5.15	□□□□□ -1.58
MACF1-231	ENST00000564288	TSPY26P	Q9H489	355 aa		5.15	□□□□□ -1.59
MACF1-231	ENST00000564288	TMF1	P82094	1093 aa		5.15	□□□□□ -1.59
MACF1-231	ENST00000564288	LEKR1	Q6ZMV7	388 aa		5.15	□□□□□ -1.59
MACF1-231	ENST00000564288	PAIP2	Q9BPZ3	127 aa	Known RBP	5.15	□□□□□ -1.59
MACF1-231	ENST00000564288	SNX21	Q969T3	373 aa		5.15	□□□□□ -1.59
MACF1-231	ENST00000564288	TXLNB	Q8N3L3	684 aa		5.15	□□□□□ -1.59
MACF1-231	ENST00000564288	TTLL5	Q6EMB2	1281 aa		5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	PPP1R9B	Q96SB3	815 aa		5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	CUL7	Q14999	1698 aa		5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	AMER1	Q5JTC6	1135 aa	Predicted RBP	5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	CC2D2A	Q9P2K1	1620 aa		5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	CAMSAP2	Q08AD1	1489 aa		5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	ZNF500	O60304	480 aa	Predicted RBP	5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	ARHGEF12	Q9NZN5	1544 aa		5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	UBXN4	Q92575	508 aa		5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	MFAP1	P55081	439 aa	Known RBP	5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	DMTN	Q08495	405 aa		5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	TPD52L1	Q16890	204 aa	Predicted RBP	5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	NOL10	Q9BSC4	688 aa	Known RBP	5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	TEX14	Q8IWB6	1497 aa		5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	RPAIN	Q86UA6	219 aa		5.14	□□□□□ -1.59
MACF1-231	ENST00000564288	BECN2	A8MW95	431 aa		5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	CFTR	P13569	1480 aa		5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	KRT222	Q8N1A0	295 aa		5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	FGD5	Q6ZNL6	1462 aa		5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	GOLGA6L10	A6NI86	522 aa		5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	MCTP1	Q6DN14	999 aa		5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	RRAGD	Q9NQL2	400 aa	Predicted RBP	5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	FSD2	A1L4K1	749 aa		5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	HOMER1	Q86YM7	354 aa		5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	FHOD3	Q2V2M9	1422 aa		5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	CDR1	P51861	262 aa		5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	HDGF	P51858	240 aa	Known RBP	5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	ANKRD45	Q5TZF3	282 aa		5.13	□□□□□ -1.59
MACF1-231	ENST00000564288	FILIP1	Q7Z7B0	1213 aa		5.12	□□□□□ -1.59
MACF1-231	ENST00000564288	IFT57	Q9NWB7	429 aa		5.12	□□□□□ -1.59
MACF1-231	ENST00000564288	CCDC141	Q6ZP82	1450 aa		5.12	□□□□□ -1.59
MACF1-231	ENST00000564288	JAKMIP3	Q5VZ66	844 aa		5.12	□□□□□ -1.59
MACF1-231	ENST00000564288	FGD6	Q6ZV73	1430 aa		5.12	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms