RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 RABEP1Q15276 862 aa7.58□□□□□ -1.2
CLK3-212ENST00000563418 TPD52L1Q16890 204 aaPredicted RBP7.58□□□□□ -1.2
CLK3-212ENST00000563418 RASSF4Q9H2L5 321 aa7.58□□□□□ -1.2
CLK3-212ENST00000563418 LIG1P18858 919 aa7.58□□□□□ -1.2
CLK3-212ENST00000563418 INCENPQ9NQS7 918 aa7.58□□□□□ -1.2
CLK3-212ENST00000563418 MYCBPQ99417 103 aaPredicted RBP7.58□□□□□ -1.2
CLK3-212ENST00000563418 OGFRQ9NZT2 677 aa7.58□□□□□ -1.2
CLK3-212ENST00000563418 BECN2A8MW95 431 aa7.58□□□□□ -1.2
CLK3-212ENST00000563418 CHMP4CQ96CF2 233 aa7.58□□□□□ -1.2
CLK3-212ENST00000563418 HOMER1Q86YM7 354 aa7.58□□□□□ -1.2
CLK3-212ENST00000563418 WWC1Q8IX03 1113 aa7.58□□□□□ -1.2
CLK3-212ENST00000563418 STK11IPQ8N1F8 1099 aa7.58□□□□□ -1.2
CLK3-212ENST00000563418 MCTP1Q6DN14 999 aa7.58□□□□□ -1.2
CLK3-212ENST00000563418 AKNAQ7Z591 1439 aa7.57□□□□□ -1.2
CLK3-212ENST00000563418 XRCC6P12956 609 aaKnown RBP eCLIP7.57□□□□□ -1.2
CLK3-212ENST00000563418 GPATCH11Q8N954 259 aa7.57□□□□□ -1.2
CLK3-212ENST00000563418 E9PSI1 815 aa7.57□□□□□ -1.2
CLK3-212ENST00000563418 RUFY1Q96T51 708 aa7.57□□□□□ -1.2
CLK3-212ENST00000563418 CHMP4AQ9BY43 222 aa7.57□□□□□ -1.2
CLK3-212ENST00000563418 NOL10Q9BSC4 688 aaKnown RBP7.57□□□□□ -1.2
CLK3-212ENST00000563418 NAT10Q9H0A0 1025 aaKnown RBP7.57□□□□□ -1.2
CLK3-212ENST00000563418 HDAC5Q9UQL6 1122 aa7.57□□□□□ -1.2
CLK3-212ENST00000563418 TPRNQ4KMQ1 711 aa7.57□□□□□ -1.2
CLK3-212ENST00000563418 KIF7Q2M1P5 1343 aa7.57□□□□□ -1.2
CLK3-212ENST00000563418 U2SURPO15042 1029 aaKnown RBP7.56□□□□□ -1.2
CLK3-212ENST00000563418 PAXBP1Q9Y5B6 917 aa7.56□□□□□ -1.2
CLK3-212ENST00000563418 GOLGA6L7A0A1B0GV03 622 aa7.56□□□□□ -1.2
CLK3-212ENST00000563418 SETSIPP0DME0 302 aa7.56□□□□□ -1.2
CLK3-212ENST00000563418 TMF1P82094 1093 aa7.56□□□□□ -1.2
CLK3-212ENST00000563418 HSP90AB3PQ58FF7 597 aa7.56□□□□□ -1.2
CLK3-212ENST00000563418 MCM2P49736 904 aa7.56□□□□□ -1.2
CLK3-212ENST00000563418 V9GYY5 206 aaPredicted RBP7.56□□□□□ -1.2
CLK3-212ENST00000563418 MAPK8IP2Q13387 824 aaPredicted RBP7.55□□□□□ -1.2
CLK3-212ENST00000563418 KIF27Q86VH2 1401 aa7.55□□□□□ -1.2
CLK3-212ENST00000563418 TMCO3Q6UWJ1 677 aa7.55□□□□□ -1.2
CLK3-212ENST00000563418 TEX2Q8IWB9 1127 aa7.55□□□□□ -1.2
CLK3-212ENST00000563418 PLCD3Q8N3E9 789 aa7.55□□□□□ -1.2
CLK3-212ENST00000563418 PLCD4Q9BRC7 762 aa7.55□□□□□ -1.2
CLK3-212ENST00000563418 CLSTN1O94985 981 aa7.55□□□□□ -1.2
CLK3-212ENST00000563418 BMS1Q14692 1282 aaKnown RBP7.55□□□□□ -1.2
CLK3-212ENST00000563418 CT47A1Q5JQC4 288 aaPredicted RBP7.55□□□□□ -1.2
CLK3-212ENST00000563418 FILIP1Q7Z7B0 1213 aa7.55□□□□□ -1.2
CLK3-212ENST00000563418 ITPRIPQ8IWB1 547 aa7.55□□□□□ -1.2
CLK3-212ENST00000563418 KIAA1328Q86T90 577 aa7.54□□□□□ -1.2
CLK3-212ENST00000563418 DYDC1Q8WWB3 177 aa7.54□□□□□ -1.2
CLK3-212ENST00000563418 CCDC7Q96M83 1385 aa7.54□□□□□ -1.2
CLK3-212ENST00000563418 GOLGA6L10A6NI86 522 aa7.54□□□□□ -1.2
CLK3-212ENST00000563418 ZKSCAN5Q9Y2L8 839 aa7.54□□□□□ -1.2
CLK3-212ENST00000563418 SARNPP82979 210 aaKnown RBP7.53□□□□□ -1.2
CLK3-212ENST00000563418 CCAR2Q8N163 923 aaKnown RBP7.53□□□□□ -1.2
CLK3-212ENST00000563418 A0A1B0GUL7 405 aa7.53□□□□□ -1.2
CLK3-212ENST00000563418 GBP3Q9H0R5 595 aa7.53□□□□□ -1.2
CLK3-212ENST00000563418 NF2P35240 595 aa7.53□□□□□ -1.2
CLK3-212ENST00000563418 SMARCA2P51531 1590 aa7.53□□□□□ -1.2
CLK3-212ENST00000563418 TRIM6-TRIM34B2RNG4 842 aa7.53□□□□□ -1.2
CLK3-212ENST00000563418 NEMFO60524 1076 aa7.53□□□□□ -1.2
CLK3-212ENST00000563418 RRP12Q5JTH9 1297 aaKnown RBP7.53□□□□□ -1.2
CLK3-212ENST00000563418 CLUAP1Q96AJ1 413 aa7.53□□□□□ -1.2
CLK3-212ENST00000563418 TRIM34Q9BYJ4 488 aa7.53□□□□□ -1.2
CLK3-212ENST00000563418 ZRSR2Q15696 482 aaKnown RBP7.53□□□□□ -1.2
CLK3-212ENST00000563418 TTC31Q49AM3 519 aaPredicted RBP7.53□□□□□ -1.2
CLK3-212ENST00000563418 XPCQ01831 940 aaPredicted RBP7.53□□□□□ -1.2
CLK3-212ENST00000563418 RRAGDQ9NQL2 400 aaPredicted RBP7.53□□□□□ -1.2
CLK3-212ENST00000563418 TUBB4AP04350 444 aa7.53□□□□□ -1.2
CLK3-212ENST00000563418 DNAAF4Q8WXU2 420 aa7.52□□□□□ -1.2
CLK3-212ENST00000563418 CCDC18Q5T9S5 1454 aa7.52□□□□□ -1.2
CLK3-212ENST00000563418 CCDC192P0DO97 292 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 MICALCLQ6ZW33 695 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 EFCC1Q9HA90 598 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 CHIC2Q9UKJ5 165 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 ANKRD20A12PQ8NF67 263 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 CPSF2Q9P2I0 782 aaKnown RBP7.52□□□□□ -1.21
CLK3-212ENST00000563418 UVSSAQ2YD98 709 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 DDX19BQ9UMR2 479 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 SHTN1A0MZ66 631 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 FOXD4L1Q9NU39 408 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 MYO6Q9UM54 1294 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 MRVI1Q9Y6F6 885 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 KIF21BO75037 1637 aa7.52□□□□□ -1.21
CLK3-212ENST00000563418 POLR3GO15318 223 aaPredicted RBP7.51□□□□□ -1.21
CLK3-212ENST00000563418 KLHL40Q2TBA0 621 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 BANK1Q8NDB2 785 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 POTEB2H3BUK9 544 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 NOL7Q9UMY1 257 aaKnown RBP7.51□□□□□ -1.21
CLK3-212ENST00000563418 TULP1O00294 542 aaPredicted RBP7.51□□□□□ -1.21
CLK3-212ENST00000563418 MCM3P25205 808 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 LUZP1Q86V48 1076 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 DHX29Q7Z478 1369 aaKnown RBP7.51□□□□□ -1.21
CLK3-212ENST00000563418 CAGE1Q8TC20 777 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 BRMS1Q9HCU9 246 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 RRP7BPQ9NSQ0 103 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 KIF18AQ8NI77 898 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 RRBP1Q9P2E9 1410 aaKnown RBP7.51□□□□□ -1.21
CLK3-212ENST00000563418 NACADO15069 1562 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 MNAT1P51948 309 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 KDM2AQ9Y2K7 1162 aa7.51□□□□□ -1.21
CLK3-212ENST00000563418 K7ELQ4 463 aaPredicted RBP7.5□□□□□ -1.21
CLK3-212ENST00000563418 TRIM5Q9C035 493 aa7.5□□□□□ -1.21
CLK3-212ENST00000563418 STK31Q9BXU1 1019 aa7.5□□□□□ -1.21
CLK3-212ENST00000563418 TSR1Q2NL82 804 aaKnown RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms