RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ANKK1Q8NFD2 765 aa7.75□□□□□ -1.17
VPS35-203ENST00000562420 NECTIN2Q92692 538 aa7.75□□□□□ -1.17
VPS35-203ENST00000562420 SLC24A3Q9HC58 644 aa7.74□□□□□ -1.17
VPS35-203ENST00000562420 SOWAHBA6NEL2 793 aa7.73□□□□□ -1.17
VPS35-203ENST00000562420 TRIM66O15016 1216 aa7.73□□□□□ -1.17
VPS35-203ENST00000562420 SLC4A3P48751 1232 aa7.73□□□□□ -1.17
VPS35-203ENST00000562420 HDGFP51858 240 aaKnown RBP7.73□□□□□ -1.17
VPS35-203ENST00000562420 FAM161AQ3B820 660 aa7.73□□□□□ -1.17
VPS35-203ENST00000562420 PHOX2BQ99453 314 aa7.73□□□□□ -1.17
VPS35-203ENST00000562420 TMUB1Q9BVT8 246 aa7.73□□□□□ -1.17
VPS35-203ENST00000562420 DAXXQ9UER7 740 aaPredicted RBP7.73□□□□□ -1.17
VPS35-203ENST00000562420 CLCN1P35523 988 aa7.72□□□□□ -1.17
VPS35-203ENST00000562420 SLF2Q8IX21 1173 aa7.72□□□□□ -1.17
VPS35-203ENST00000562420 LRCH3Q96II8 777 aa7.72□□□□□ -1.17
VPS35-203ENST00000562420 NYAP1Q6ZVC0 841 aa7.71□□□□□ -1.18
VPS35-203ENST00000562420 SAMD7Q7Z3H4 446 aa7.71□□□□□ -1.18
VPS35-203ENST00000562420 GPCPD1Q9NPB8 672 aa7.71□□□□□ -1.18
VPS35-203ENST00000562420 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.71□□□□□ -1.18
VPS35-203ENST00000562420 SWT1Q5T5J6 900 aaKnown RBP7.7□□□□□ -1.18
VPS35-203ENST00000562420 SULF1Q8IWU6 871 aa7.7□□□□□ -1.18
VPS35-203ENST00000562420 ITGBL1O95965 494 aaPredicted RBP7.69□□□□□ -1.18
VPS35-203ENST00000562420 WBP1LQ9NX94 342 aa7.69□□□□□ -1.18
VPS35-203ENST00000562420 PDE4DQ08499 809 aa7.68□□□□□ -1.18
VPS35-203ENST00000562420 TSR3Q9UJK0 312 aaKnown RBP7.68□□□□□ -1.18
VPS35-203ENST00000562420 MDM2Q00987 491 aaPredicted RBP7.67□□□□□ -1.18
VPS35-203ENST00000562420 RSPH4AQ5TD94 716 aa7.67□□□□□ -1.18
VPS35-203ENST00000562420 PARP9Q8IXQ6 854 aa7.67□□□□□ -1.18
VPS35-203ENST00000562420 PRR14Q9BWN1 585 aa7.66□□□□□ -1.18
VPS35-203ENST00000562420 FAM217BQ9NTX9 383 aaPredicted RBP7.66□□□□□ -1.18
VPS35-203ENST00000562420 TTLL12Q14166 644 aaPredicted RBP7.65□□□□□ -1.18
VPS35-203ENST00000562420 KCNC4Q03721 635 aa7.64□□□□□ -1.19
VPS35-203ENST00000562420 GIGYF2Q6Y7W6 1299 aaKnown RBP7.64□□□□□ -1.19
VPS35-203ENST00000562420 Q6ZNB5 142 aa7.64□□□□□ -1.19
VPS35-203ENST00000562420 HPS5Q9UPZ3 1129 aa7.64□□□□□ -1.19
VPS35-203ENST00000562420 PRKCSHP14314 528 aaPredicted RBP7.63□□□□□ -1.19
VPS35-203ENST00000562420 CD46P15529 392 aa7.63□□□□□ -1.19
VPS35-203ENST00000562420 PPP4CP60510 307 aa7.63□□□□□ -1.19
VPS35-203ENST00000562420 REPIN1Q9BWE0 567 aaKnown RBP7.63□□□□□ -1.19
VPS35-203ENST00000562420 SLC10A3P09131 477 aa7.62□□□□□ -1.19
VPS35-203ENST00000562420 NLRP7Q8WX94 980 aa7.62□□□□□ -1.19
VPS35-203ENST00000562420 DDX11L8A8MPP1 907 aa7.61□□□□□ -1.19
VPS35-203ENST00000562420 KMT5BQ4FZB7 885 aa7.61□□□□□ -1.19
VPS35-203ENST00000562420 RNF40O75150 1001 aa7.6□□□□□ -1.19
VPS35-203ENST00000562420 SSTR3P32745 418 aaPredicted RBP7.6□□□□□ -1.19
VPS35-203ENST00000562420 ACTN4O43707 911 aaKnown RBP7.59□□□□□ -1.19
VPS35-203ENST00000562420 CFHP08603 1231 aa7.59□□□□□ -1.19
VPS35-203ENST00000562420 GCGRP47871 477 aa7.59□□□□□ -1.19
VPS35-203ENST00000562420 RDH13Q8NBN7 331 aa7.59□□□□□ -1.19
VPS35-203ENST00000562420 BRPF1P55201 1214 aaPredicted RBP7.58□□□□□ -1.2
VPS35-203ENST00000562420 USP46P62068 366 aa7.58□□□□□ -1.2
VPS35-203ENST00000562420 DIXDC1Q155Q3 683 aa7.58□□□□□ -1.2
VPS35-203ENST00000562420 KDM4CQ9H3R0 1056 aa7.58□□□□□ -1.2
VPS35-203ENST00000562420 MS4A1P11836 297 aa7.57□□□□□ -1.2
VPS35-203ENST00000562420 APLP1P51693 650 aa7.57□□□□□ -1.2
VPS35-203ENST00000562420 DDRGK1Q96HY6 314 aa7.57□□□□□ -1.2
VPS35-203ENST00000562420 NEUROD2Q15784 382 aa7.56□□□□□ -1.2
VPS35-203ENST00000562420 GRIPAP1Q4V328 841 aa7.55□□□□□ -1.2
VPS35-203ENST00000562420 KDM4AO75164 1064 aa7.54□□□□□ -1.2
VPS35-203ENST00000562420 GJA5P36382 358 aa7.54□□□□□ -1.2
VPS35-203ENST00000562420 BEGAINQ9BUH8 593 aa7.54□□□□□ -1.2
VPS35-203ENST00000562420 GPBP1L1Q9HC44 474 aaPredicted RBP7.54□□□□□ -1.2
VPS35-203ENST00000562420 GFRA3O60609 400 aa7.53□□□□□ -1.2
VPS35-203ENST00000562420 ATP6V1AP38606 617 aa7.53□□□□□ -1.2
VPS35-203ENST00000562420 PCDHB3Q9Y5E6 796 aa7.53□□□□□ -1.2
VPS35-203ENST00000562420 LCE2BO14633 110 aa7.52□□□□□ -1.21
VPS35-203ENST00000562420 TJAP1Q5JTD0 557 aa7.52□□□□□ -1.21
VPS35-203ENST00000562420 HOXA2O43364 376 aa7.51□□□□□ -1.21
VPS35-203ENST00000562420 FUT2Q10981 343 aa7.51□□□□□ -1.21
VPS35-203ENST00000562420 NUTM1Q86Y26 1132 aa7.51□□□□□ -1.21
VPS35-203ENST00000562420 RSPH6AQ9H0K4 717 aa7.51□□□□□ -1.21
VPS35-203ENST00000562420 IL21Q9HBE4 155 aa7.51□□□□□ -1.21
VPS35-203ENST00000562420 GOPCQ9HD26 462 aa7.51□□□□□ -1.21
VPS35-203ENST00000562420 SALL2Q9Y467 1007 aaPredicted RBP7.51□□□□□ -1.21
VPS35-203ENST00000562420 NR1I2O75469 434 aa7.5□□□□□ -1.21
VPS35-203ENST00000562420 TUSC1Q2TAM9 212 aa7.5□□□□□ -1.21
VPS35-203ENST00000562420 MORN1Q5T089 497 aa7.5□□□□□ -1.21
VPS35-203ENST00000562420 SPIRE2Q8WWL2 714 aa7.5□□□□□ -1.21
VPS35-203ENST00000562420 PRKD2Q9BZL6 878 aa7.5□□□□□ -1.21
VPS35-203ENST00000562420 TRAF7Q6Q0C0 670 aa7.49□□□□□ -1.21
VPS35-203ENST00000562420 MTRQ99707 1265 aa7.49□□□□□ -1.21
VPS35-203ENST00000562420 TBC1D2Q9BYX2 928 aa7.49□□□□□ -1.21
VPS35-203ENST00000562420 FAM117AQ9C073 453 aa7.49□□□□□ -1.21
VPS35-203ENST00000562420 PLEKHG3A1L390 1219 aa7.48□□□□□ -1.21
VPS35-203ENST00000562420 LAPTM4AQ15012 233 aa7.48□□□□□ -1.21
VPS35-203ENST00000562420 SH3D19Q5HYK7 790 aa7.48□□□□□ -1.21
VPS35-203ENST00000562420 PPP1R18Q6NYC8 613 aa7.48□□□□□ -1.21
VPS35-203ENST00000562420 ZNF516Q92618 1163 aa7.48□□□□□ -1.21
VPS35-203ENST00000562420 SPTLC1O15269 473 aa7.47□□□□□ -1.21
VPS35-203ENST00000562420 Q3C1V9 767 aa7.47□□□□□ -1.21
VPS35-203ENST00000562420 BLOC1S3Q6QNY0 202 aa7.47□□□□□ -1.21
VPS35-203ENST00000562420 ZPR1O75312 459 aa7.46□□□□□ -1.22
VPS35-203ENST00000562420 MYSM1Q5VVJ2 828 aa7.46□□□□□ -1.22
VPS35-203ENST00000562420 RSBN1LQ6PCB5 846 aaPredicted RBP7.46□□□□□ -1.22
VPS35-203ENST00000562420 SCUBE3Q8IX30 993 aa7.45□□□□□ -1.22
VPS35-203ENST00000562420 NKX2-3Q8TAU0 364 aa7.45□□□□□ -1.22
VPS35-203ENST00000562420 MOXD2PA6NHM9 499 aa7.44□□□□□ -1.22
VPS35-203ENST00000562420 FDX1P10109 184 aa7.44□□□□□ -1.22
VPS35-203ENST00000562420 SKIV2LQ15477 1246 aaKnown RBP7.44□□□□□ -1.22
VPS35-203ENST00000562420 PUS10Q3MIT2 529 aaKnown RBP7.44□□□□□ -1.22
VPS35-203ENST00000562420 PRPF38BQ5VTL8 546 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms