RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 ANO8Q9HCE9 1232 aaPredicted RBP18.18■□□□□ 0.5
VPS9D1-202ENST00000561976 MAST1Q9Y2H9 1570 aa18.17■□□□□ 0.5
VPS9D1-202ENST00000561976 ZNF521Q96K83 1311 aa18.17■□□□□ 0.5
VPS9D1-202ENST00000561976 SLFN5Q08AF3 891 aa18.17■□□□□ 0.5
VPS9D1-202ENST00000561976 ATP10AO60312 1499 aa18.15■□□□□ 0.5
VPS9D1-202ENST00000561976 TTC37Q6PGP7 1564 aa18.14■□□□□ 0.49
VPS9D1-202ENST00000561976 DUOX2Q9NRD8 1548 aa18.14■□□□□ 0.49
VPS9D1-202ENST00000561976 RNF17Q9BXT8 1623 aaKnown RBP18.13■□□□□ 0.49
VPS9D1-202ENST00000561976 APAF1O14727 1248 aa18.13■□□□□ 0.49
VPS9D1-202ENST00000561976 PLXNC1O60486 1568 aa18.12■□□□□ 0.49
VPS9D1-202ENST00000561976 BRPF3Q9ULD4 1205 aa18.12■□□□□ 0.49
VPS9D1-202ENST00000561976 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.12■□□□□ 0.49
VPS9D1-202ENST00000561976 ASXL1Q8IXJ9 1541 aa18.11■□□□□ 0.49
VPS9D1-202ENST00000561976 FRAT1Q92837 279 aaPredicted RBP18.11■□□□□ 0.49
VPS9D1-202ENST00000561976 BCAR3O75815 825 aa18.11■□□□□ 0.49
VPS9D1-202ENST00000561976 SPINK5Q9NQ38 1064 aaPredicted RBP18.1■□□□□ 0.49
VPS9D1-202ENST00000561976 PIK3C2GO75747 1445 aa18.1■□□□□ 0.49
VPS9D1-202ENST00000561976 NKTRP30414 1462 aaKnown RBP18.08■□□□□ 0.49
VPS9D1-202ENST00000561976 SCAF11Q99590 1463 aaKnown RBP18.08■□□□□ 0.49
VPS9D1-202ENST00000561976 EIF3AQ14152 1382 aaKnown RBP18.08■□□□□ 0.49
VPS9D1-202ENST00000561976 SYNMO15061 1565 aa18.08■□□□□ 0.48
VPS9D1-202ENST00000561976 TRMT2AQ8IZ69 625 aaKnown RBP18.08■□□□□ 0.48
VPS9D1-202ENST00000561976 E9PSI1 815 aa18.07■□□□□ 0.48
VPS9D1-202ENST00000561976 CLASP1Q7Z460 1538 aa18.07■□□□□ 0.48
VPS9D1-202ENST00000561976 MADDQ8WXG6 1647 aa18.07■□□□□ 0.48
VPS9D1-202ENST00000561976 FRAT2O75474 233 aaPredicted RBP18.07■□□□□ 0.48
VPS9D1-202ENST00000561976 CANXP27824 592 aaKnown RBP18.06■□□□□ 0.48
VPS9D1-202ENST00000561976 IQGAP1P46940 1657 aa18.06■□□□□ 0.48
VPS9D1-202ENST00000561976 EFCAB2Q5VUJ9 269 aa18.04■□□□□ 0.48
VPS9D1-202ENST00000561976 IGHDP01880 384 aa18.04■□□□□ 0.48
VPS9D1-202ENST00000561976 NPC1L1Q9UHC9 1359 aa18.03■□□□□ 0.48
VPS9D1-202ENST00000561976 STAC3Q96MF2 364 aa18.02■□□□□ 0.48
VPS9D1-202ENST00000561976 CGNL1Q0VF96 1302 aa18.02■□□□□ 0.47
VPS9D1-202ENST00000561976 ABCC2Q92887 1545 aa18.02■□□□□ 0.47
VPS9D1-202ENST00000561976 DMRT2Q9Y5R5 561 aa18.02■□□□□ 0.47
VPS9D1-202ENST00000561976 SCAPERQ9BY12 1400 aa18.01■□□□□ 0.47
VPS9D1-202ENST00000561976 CENPJQ9HC77 1338 aaPredicted RBP18■□□□□ 0.47
VPS9D1-202ENST00000561976 ZBTB4Q9P1Z0 1013 aaPredicted RBP18■□□□□ 0.47
VPS9D1-202ENST00000561976 COG6Q9Y2V7 657 aa18■□□□□ 0.47
VPS9D1-202ENST00000561976 SPAG9O60271 1321 aaKnown RBP17.99■□□□□ 0.47
VPS9D1-202ENST00000561976 PDE3AQ14432 1141 aa17.99■□□□□ 0.47
VPS9D1-202ENST00000561976 PANK1Q8TE04 598 aa17.99■□□□□ 0.47
VPS9D1-202ENST00000561976 CLUAP1Q96AJ1 413 aa17.99■□□□□ 0.47
VPS9D1-202ENST00000561976 PLCH2O75038 1416 aa17.99■□□□□ 0.47
VPS9D1-202ENST00000561976 TRAPPC8Q9Y2L5 1435 aa17.99■□□□□ 0.47
VPS9D1-202ENST00000561976 SPHKAPQ2M3C7 1700 aa17.98■□□□□ 0.47
VPS9D1-202ENST00000561976 TRPM2O94759 1503 aa17.98■□□□□ 0.47
VPS9D1-202ENST00000561976 MYOM1P52179 1685 aa17.98■□□□□ 0.47
VPS9D1-202ENST00000561976 NGEFQ8N5V2 710 aa17.97■□□□□ 0.47
VPS9D1-202ENST00000561976 MAPK8IP3Q9UPT6 1336 aa17.97■□□□□ 0.47
VPS9D1-202ENST00000561976 NEUROD2Q15784 382 aa17.97■□□□□ 0.47
VPS9D1-202ENST00000561976 CFAP70Q5T0N1 1121 aa17.97■□□□□ 0.47
VPS9D1-202ENST00000561976 KDM5AP29375 1690 aaKnown RBP17.97■□□□□ 0.47
VPS9D1-202ENST00000561976 AFAP1Q8N556 730 aa17.96■□□□□ 0.47
VPS9D1-202ENST00000561976 CARD14Q9BXL6 1004 aa17.96■□□□□ 0.47
VPS9D1-202ENST00000561976 SLC24A1O60721 1099 aa17.96■□□□□ 0.46
VPS9D1-202ENST00000561976 BECN1Q14457 450 aa17.96■□□□□ 0.46
VPS9D1-202ENST00000561976 WWC1Q8IX03 1113 aa17.96■□□□□ 0.46
VPS9D1-202ENST00000561976 SEC24BO95487 1268 aa17.95■□□□□ 0.46
VPS9D1-202ENST00000561976 USP19O94966 1318 aa17.95■□□□□ 0.46
VPS9D1-202ENST00000561976 CLTCL1P53675 1640 aa17.95■□□□□ 0.46
VPS9D1-202ENST00000561976 CEP152O94986 1710 aa17.94■□□□□ 0.46
VPS9D1-202ENST00000561976 NINLQ9Y2I6 1382 aa17.94■□□□□ 0.46
VPS9D1-202ENST00000561976 PTPRTO14522 1441 aa17.94■□□□□ 0.46
VPS9D1-202ENST00000561976 ABCC1P33527 1531 aa17.92■□□□□ 0.46
VPS9D1-202ENST00000561976 KANK1Q14678 1352 aa17.92■□□□□ 0.46
VPS9D1-202ENST00000561976 TNNT2P45379 298 aaPredicted RBP17.92■□□□□ 0.46
VPS9D1-202ENST00000561976 SLKQ9H2G2 1235 aaPredicted RBP17.92■□□□□ 0.46
VPS9D1-202ENST00000561976 RRP7AQ9Y3A4 280 aaKnown RBP17.92■□□□□ 0.46
VPS9D1-202ENST00000561976 ERVK-7P63135 1459 aa17.91■□□□□ 0.46
VPS9D1-202ENST00000561976 UPF2Q9HAU5 1272 aaKnown RBP17.91■□□□□ 0.46
VPS9D1-202ENST00000561976 MORC1Q86VD1 984 aa17.9■□□□□ 0.46
VPS9D1-202ENST00000561976 PMFBP1Q8TBY8 1022 aa17.9■□□□□ 0.46
VPS9D1-202ENST00000561976 ADGRF5Q8IZF2 1346 aa17.9■□□□□ 0.46
VPS9D1-202ENST00000561976 KIF3BO15066 747 aa17.89■□□□□ 0.45
VPS9D1-202ENST00000561976 POLR3AO14802 1390 aaPredicted RBP17.89■□□□□ 0.45
VPS9D1-202ENST00000561976 ERCC6L2Q5T890 1561 aa17.88■□□□□ 0.45
VPS9D1-202ENST00000561976 RARSP54136 660 aaKnown RBP17.88■□□□□ 0.45
VPS9D1-202ENST00000561976 RUNDC1Q96C34 613 aa17.87■□□□□ 0.45
VPS9D1-202ENST00000561976 BCL2L13Q9BXK5 485 aa17.87■□□□□ 0.45
VPS9D1-202ENST00000561976 POGKQ9P215 609 aa17.87■□□□□ 0.45
VPS9D1-202ENST00000561976 VIRMAQ69YN4 1812 aaKnown RBP17.87■□□□□ 0.45
VPS9D1-202ENST00000561976 CHD1O14646 1710 aa17.87■□□□□ 0.45
VPS9D1-202ENST00000561976 TCP11L2Q8N4U5 519 aa17.86■□□□□ 0.45
VPS9D1-202ENST00000561976 RTEL1-TNFRSF6BF6WH68 1400 aa17.86■□□□□ 0.45
VPS9D1-202ENST00000561976 TNNQ9UQP3 1299 aa17.85■□□□□ 0.45
VPS9D1-202ENST00000561976 PCDHB15Q9Y5E8 787 aa17.85■□□□□ 0.45
VPS9D1-202ENST00000561976 KIAA1210Q9ULL0 1709 aa17.85■□□□□ 0.45
VPS9D1-202ENST00000561976 SHROOM2Q13796 1616 aa17.85■□□□□ 0.45
VPS9D1-202ENST00000561976 TET3O43151 1660 aa17.85■□□□□ 0.45
VPS9D1-202ENST00000561976 PDZRN3Q9UPQ7 1066 aa17.85■□□□□ 0.45
VPS9D1-202ENST00000561976 ZFYVE16Q7Z3T8 1539 aa17.84■□□□□ 0.45
VPS9D1-202ENST00000561976 RLBP1P12271 317 aa17.84■□□□□ 0.45
VPS9D1-202ENST00000561976 NSD3Q9BZ95 1437 aa17.84■□□□□ 0.45
VPS9D1-202ENST00000561976 AAMPQ13685 434 aa17.83■□□□□ 0.45
VPS9D1-202ENST00000561976 CHGAP10645 457 aaKnown RBP17.83■□□□□ 0.44
VPS9D1-202ENST00000561976 UGGT1Q9NYU2 1555 aa17.82■□□□□ 0.44
VPS9D1-202ENST00000561976 ZCCHC11Q5TAX3 1644 aaKnown RBP17.82■□□□□ 0.44
VPS9D1-202ENST00000561976 ABCA6Q8N139 1617 aa17.82■□□□□ 0.44
VPS9D1-202ENST00000561976 MAP3K4Q9Y6R4 1608 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms