RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 RTEL1-TNFRSF6BF6WH68 1400 aa24.26■■□□□ 1.47
RAB40C-206ENST00000561781 ADGBQ8N7X0 1667 aa24.26■■□□□ 1.47
RAB40C-206ENST00000561781 ANKRD30AQ9BXX3 1397 aa24.26■■□□□ 1.47
RAB40C-206ENST00000561781 ARID4BQ4LE39 1312 aaPredicted RBP24.25■■□□□ 1.47
RAB40C-206ENST00000561781 CALD1Q05682 793 aaKnown RBP24.25■■□□□ 1.47
RAB40C-206ENST00000561781 MAGI2Q86UL8 1455 aa24.25■■□□□ 1.47
RAB40C-206ENST00000561781 SPATA31E1Q6ZUB1 1445 aa24.25■■□□□ 1.47
RAB40C-206ENST00000561781 ADGRL2O95490 1459 aa24.23■■□□□ 1.47
RAB40C-206ENST00000561781 PNISRQ8TF01 805 aaKnown RBP24.23■■□□□ 1.47
RAB40C-206ENST00000561781 ATP10AO60312 1499 aa24.23■■□□□ 1.47
RAB40C-206ENST00000561781 A2MP01023 1474 aa24.23■■□□□ 1.47
RAB40C-206ENST00000561781 PDCL3Q9H2J4 239 aa24.22■■□□□ 1.47
RAB40C-206ENST00000561781 NBPF8Q3BBV2 869 aa24.22■■□□□ 1.47
RAB40C-206ENST00000561781 PLXNC1O60486 1568 aa24.21■■□□□ 1.47
RAB40C-206ENST00000561781 SKAP1Q86WV1 359 aa24.21■■□□□ 1.47
RAB40C-206ENST00000561781 KIF3BO15066 747 aa24.2■■□□□ 1.46
RAB40C-206ENST00000561781 RCAN3Q9UKA8 241 aa24.19■■□□□ 1.46
RAB40C-206ENST00000561781 ROCK1Q13464 1354 aa24.18■■□□□ 1.46
RAB40C-206ENST00000561781 GGT6Q6P531 493 aa24.18■■□□□ 1.46
RAB40C-206ENST00000561781 ANKRD50Q9ULJ7 1429 aa24.17■■□□□ 1.46
RAB40C-206ENST00000561781 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.16■■□□□ 1.46
RAB40C-206ENST00000561781 POGKQ9P215 609 aa24.16■■□□□ 1.46
RAB40C-206ENST00000561781 TMC1Q8TDI8 760 aa24.15■■□□□ 1.46
RAB40C-206ENST00000561781 PRDM4Q9UKN5 801 aa24.15■■□□□ 1.46
RAB40C-206ENST00000561781 PDE4CQ08493 712 aa24.14■■□□□ 1.46
RAB40C-206ENST00000561781 DUOX2Q9NRD8 1548 aa24.14■■□□□ 1.46
RAB40C-206ENST00000561781 TPM2P07951 284 aa24.13■■□□□ 1.45
RAB40C-206ENST00000561781 FOXD1Q16676 465 aa24.12■■□□□ 1.45
RAB40C-206ENST00000561781 MPHOSPH9Q99550 1183 aa24.12■■□□□ 1.45
RAB40C-206ENST00000561781 POLR3GLQ9BT43 218 aa24.1■■□□□ 1.45
RAB40C-206ENST00000561781 GCC2Q8IWJ2 1684 aa24.1■■□□□ 1.45
RAB40C-206ENST00000561781 LRPPRCP42704 1394 aaKnown RBP24.09■■□□□ 1.45
RAB40C-206ENST00000561781 PLPPR3Q6T4P5 718 aa24.09■■□□□ 1.45
RAB40C-206ENST00000561781 ERBINQ96RT1 1412 aa24.08■■□□□ 1.44
RAB40C-206ENST00000561781 REREQ9P2R6 1566 aa24.05■■□□□ 1.44
RAB40C-206ENST00000561781 RPRD2Q5VT52 1461 aaKnown RBP24.05■■□□□ 1.44
RAB40C-206ENST00000561781 FAM161AQ3B820 660 aa24.05■■□□□ 1.44
RAB40C-206ENST00000561781 XRCC6P12956 609 aaKnown RBP eCLIP24.04■■□□□ 1.44
RAB40C-206ENST00000561781 GOLGA6L3A6NEY3 463 aa24.04■■□□□ 1.44
RAB40C-206ENST00000561781 BCORL1Q5H9F3 1711 aa24.03■■□□□ 1.44
RAB40C-206ENST00000561781 MROH1Q8NDA8 1641 aa24.03■■□□□ 1.44
RAB40C-206ENST00000561781 PLIN1O60240 522 aa24.02■■□□□ 1.44
RAB40C-206ENST00000561781 AGLP35573 1532 aa24.01■■□□□ 1.43
RAB40C-206ENST00000561781 FSD2A1L4K1 749 aa24■■□□□ 1.43
RAB40C-206ENST00000561781 CRBNQ96SW2 442 aa24■■□□□ 1.43
RAB40C-206ENST00000561781 ANKRD30BQ9BXX2 1392 aa23.99■■□□□ 1.43
RAB40C-206ENST00000561781 RGS3P49796 1198 aa23.98■■□□□ 1.43
RAB40C-206ENST00000561781 NUP155O75694 1391 aa23.98■■□□□ 1.43
RAB40C-206ENST00000561781 EIF2AK4Q9P2K8 1649 aaKnown RBP23.98■■□□□ 1.43
RAB40C-206ENST00000561781 KDM4FA0A1W2PPD8 638 aa23.97■■□□□ 1.43
RAB40C-206ENST00000561781 C8orf34Q49A92 452 aa23.97■■□□□ 1.43
RAB40C-206ENST00000561781 KTN1Q86UP2 1357 aaKnown RBP23.97■■□□□ 1.43
RAB40C-206ENST00000561781 MADDQ8WXG6 1647 aa23.96■■□□□ 1.43
RAB40C-206ENST00000561781 CEBPAP49715 358 aaPredicted RBP23.96■■□□□ 1.43
RAB40C-206ENST00000561781 BRD4O60885 1362 aaPredicted RBP23.96■■□□□ 1.43
RAB40C-206ENST00000561781 PDE3BQ13370 1112 aa23.95■■□□□ 1.43
RAB40C-206ENST00000561781 RNF17Q9BXT8 1623 aaKnown RBP23.95■■□□□ 1.42
RAB40C-206ENST00000561781 ESPNB1AK53 854 aa23.95■■□□□ 1.42
RAB40C-206ENST00000561781 USP47Q96K76 1375 aa23.94■■□□□ 1.42
RAB40C-206ENST00000561781 PRDM15P57071 1507 aaPredicted RBP23.94■■□□□ 1.42
RAB40C-206ENST00000561781 DEPDC5O75140 1603 aa23.94■■□□□ 1.42
RAB40C-206ENST00000561781 CDCA7LQ96GN5 454 aa23.93■■□□□ 1.42
RAB40C-206ENST00000561781 KDM2BQ8NHM5 1336 aa23.93■■□□□ 1.42
RAB40C-206ENST00000561781 CEP152O94986 1710 aa23.92■■□□□ 1.42
RAB40C-206ENST00000561781 MYBBP1AQ9BQG0 1328 aaKnown RBP23.92■■□□□ 1.42
RAB40C-206ENST00000561781 UNC13BO14795 1591 aa23.91■■□□□ 1.42
RAB40C-206ENST00000561781 CLTCQ00610 1675 aaKnown RBP23.91■■□□□ 1.42
RAB40C-206ENST00000561781 MAP7D2Q96T17 732 aa23.9■■□□□ 1.42
RAB40C-206ENST00000561781 ESF1Q9H501 851 aaKnown RBP23.9■■□□□ 1.42
RAB40C-206ENST00000561781 ABCC3O15438 1527 aa23.9■■□□□ 1.42
RAB40C-206ENST00000561781 FER1L4A9Z1Z3 1794 aa23.89■■□□□ 1.42
RAB40C-206ENST00000561781 PANK2Q9BZ23 570 aa23.89■■□□□ 1.42
RAB40C-206ENST00000561781 MRE11P49959 708 aa23.89■■□□□ 1.41
RAB40C-206ENST00000561781 CENPQQ7L2Z9 268 aaPredicted RBP23.89■■□□□ 1.41
RAB40C-206ENST00000561781 RIMS1Q86UR5 1692 aaKnown RBP23.88■■□□□ 1.41
RAB40C-206ENST00000561781 ADAMTSL3P82987 1691 aa23.88■■□□□ 1.41
RAB40C-206ENST00000561781 BECN1Q14457 450 aa23.88■■□□□ 1.41
RAB40C-206ENST00000561781 PZPP20742 1482 aa23.88■■□□□ 1.41
RAB40C-206ENST00000561781 FAM135AQ9P2D6 1515 aa23.88■■□□□ 1.41
RAB40C-206ENST00000561781 ROCK2O75116 1388 aaKnown RBP23.87■■□□□ 1.41
RAB40C-206ENST00000561781 KDM5DQ9BY66 1539 aa23.87■■□□□ 1.41
RAB40C-206ENST00000561781 PDIA4P13667 645 aaKnown RBP23.86■■□□□ 1.41
RAB40C-206ENST00000561781 FBXO31Q5XUX0 539 aaPredicted RBP23.86■■□□□ 1.41
RAB40C-206ENST00000561781 SLC4A1APQ9BWU0 796 aaKnown RBP23.86■■□□□ 1.41
RAB40C-206ENST00000561781 KANK1Q14678 1352 aa23.86■■□□□ 1.41
RAB40C-206ENST00000561781 MYH16Q9H6N6 1097 aa23.85■■□□□ 1.41
RAB40C-206ENST00000561781 VWDEQ8N2E2 1590 aa23.85■■□□□ 1.41
RAB40C-206ENST00000561781 C20orf194Q5TEA3 1177 aa23.84■■□□□ 1.41
RAB40C-206ENST00000561781 RALBP1Q15311 655 aa23.84■■□□□ 1.41
RAB40C-206ENST00000561781 ARXQ96QS3 562 aa23.84■■□□□ 1.41
RAB40C-206ENST00000561781 SMAP1Q8IYB5 467 aaPredicted RBP23.83■■□□□ 1.41
RAB40C-206ENST00000561781 CFAP65Q6ZU64 1925 aaKnown RBP23.83■■□□□ 1.4
RAB40C-206ENST00000561781 ZMYM3Q14202 1370 aa23.83■■□□□ 1.4
RAB40C-206ENST00000561781 IQGAP3Q86VI3 1631 aa23.82■■□□□ 1.4
RAB40C-206ENST00000561781 PKD2Q13563 968 aa23.82■■□□□ 1.4
RAB40C-206ENST00000561781 ISY1Q9ULR0 285 aaKnown RBP23.81■■□□□ 1.4
RAB40C-206ENST00000561781 NPATQ14207 1427 aa23.81■■□□□ 1.4
RAB40C-206ENST00000561781 ZNF326Q5BKZ1 582 aaKnown RBP23.81■■□□□ 1.4
RAB40C-206ENST00000561781 TRIM44Q96DX7 344 aaPredicted RBP23.8■■□□□ 1.4
RAB40C-206ENST00000561781 CAMSAP1Q5T5Y3 1602 aa23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms