RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 NOS1P29475 1434 aa18■□□□□ 0.47
USP3-220ENST00000561381 SOCS7O14512 581 aa17.98■□□□□ 0.47
USP3-220ENST00000561381 KCNA4P22459 653 aa17.96■□□□□ 0.47
USP3-220ENST00000561381 KDM5AP29375 1690 aaKnown RBP17.96■□□□□ 0.47
USP3-220ENST00000561381 PPARGC1BQ86YN6 1023 aaKnown RBP17.95■□□□□ 0.46
USP3-220ENST00000561381 ADGRB3O60242 1522 aa17.94■□□□□ 0.46
USP3-220ENST00000561381 SLC26A8Q96RN1 970 aa17.94■□□□□ 0.46
USP3-220ENST00000561381 SLC52A1Q9NWF4 448 aa17.94■□□□□ 0.46
USP3-220ENST00000561381 XIRP1Q702N8 1843 aaKnown RBP17.93■□□□□ 0.46
USP3-220ENST00000561381 MED1Q15648 1581 aaPredicted RBP17.92■□□□□ 0.46
USP3-220ENST00000561381 RPRD2Q5VT52 1461 aaKnown RBP17.92■□□□□ 0.46
USP3-220ENST00000561381 TET3O43151 1660 aa17.91■□□□□ 0.46
USP3-220ENST00000561381 ITGAEP38570 1179 aa17.9■□□□□ 0.46
USP3-220ENST00000561381 UNC13BO14795 1591 aa17.9■□□□□ 0.46
USP3-220ENST00000561381 ROCK1Q13464 1354 aa17.9■□□□□ 0.46
USP3-220ENST00000561381 KCNA6P17658 529 aa17.89■□□□□ 0.45
USP3-220ENST00000561381 RBM33Q96EV2 1170 aaKnown RBP17.89■□□□□ 0.45
USP3-220ENST00000561381 MYO5BQ9ULV0 1848 aa17.88■□□□□ 0.45
USP3-220ENST00000561381 TMEM94Q12767 1356 aa17.88■□□□□ 0.45
USP3-220ENST00000561381 GCC2Q8IWJ2 1684 aa17.87■□□□□ 0.45
USP3-220ENST00000561381 BCANQ96GW7 911 aa17.87■□□□□ 0.45
USP3-220ENST00000561381 ZFYVE9O95405 1425 aa17.87■□□□□ 0.45
USP3-220ENST00000561381 E9PCH4 1651 aa17.86■□□□□ 0.45
USP3-220ENST00000561381 TMEM131LA2VDJ0 1609 aa17.85■□□□□ 0.45
USP3-220ENST00000561381 PROSER2Q86WR7 435 aaPredicted RBP17.85■□□□□ 0.45
USP3-220ENST00000561381 RIMS2Q9UQ26 1411 aa17.85■□□□□ 0.45
USP3-220ENST00000561381 CHGAP10645 457 aaKnown RBP17.84■□□□□ 0.45
USP3-220ENST00000561381 NUP155O75694 1391 aa17.83■□□□□ 0.45
USP3-220ENST00000561381 IQGAP3Q86VI3 1631 aa17.83■□□□□ 0.44
USP3-220ENST00000561381 PLEKHG1Q9ULL1 1385 aa17.82■□□□□ 0.44
USP3-220ENST00000561381 PPP1R15AO75807 674 aaPredicted RBP17.82■□□□□ 0.44
USP3-220ENST00000561381 NUTM2DQ5VT03 806 aaPredicted RBP17.82■□□□□ 0.44
USP3-220ENST00000561381 NWD1Q149M9 1564 aa17.81■□□□□ 0.44
USP3-220ENST00000561381 NKTRP30414 1462 aaKnown RBP17.8■□□□□ 0.44
USP3-220ENST00000561381 HDGFP51858 240 aaKnown RBP17.79■□□□□ 0.44
USP3-220ENST00000561381 FAM135BQ49AJ0 1406 aa17.79■□□□□ 0.44
USP3-220ENST00000561381 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.76■□□□□ 0.43
USP3-220ENST00000561381 TBX22Q9Y458 520 aa17.76■□□□□ 0.43
USP3-220ENST00000561381 CHD2O14647 1828 aaKnown RBP17.76■□□□□ 0.43
USP3-220ENST00000561381 ADAMTS13Q76LX8 1427 aa17.75■□□□□ 0.43
USP3-220ENST00000561381 ROBO1Q9Y6N7 1651 aa17.74■□□□□ 0.43
USP3-220ENST00000561381 MSH6P52701 1360 aa17.74■□□□□ 0.43
USP3-220ENST00000561381 RRBP1Q9P2E9 1410 aaKnown RBP17.72■□□□□ 0.43
USP3-220ENST00000561381 SLAIN2Q9P270 581 aa17.71■□□□□ 0.43
USP3-220ENST00000561381 RGS17Q9UGC6 210 aaPredicted RBP17.71■□□□□ 0.43
USP3-220ENST00000561381 SPHKAPQ2M3C7 1700 aa17.69■□□□□ 0.42
USP3-220ENST00000561381 DIP2AQ14689 1571 aa17.68■□□□□ 0.42
USP3-220ENST00000561381 PTPRUQ92729 1446 aa17.68■□□□□ 0.42
USP3-220ENST00000561381 NAIPQ13075 1403 aa17.67■□□□□ 0.42
USP3-220ENST00000561381 C14orf37Q86TY3 774 aa17.67■□□□□ 0.42
USP3-220ENST00000561381 PIK3R4Q99570 1358 aa17.66■□□□□ 0.42
USP3-220ENST00000561381 ZNF326Q5BKZ1 582 aaKnown RBP17.66■□□□□ 0.42
USP3-220ENST00000561381 AMOTL2Q9Y2J4 779 aa17.66■□□□□ 0.42
USP3-220ENST00000561381 NCOA3Q9Y6Q9 1424 aa17.65■□□□□ 0.42
USP3-220ENST00000561381 TRPM2O94759 1503 aa17.65■□□□□ 0.42
USP3-220ENST00000561381 NRXN3Q9Y4C0 1643 aa17.65■□□□□ 0.42
USP3-220ENST00000561381 PHLPP1O60346 1717 aa17.64■□□□□ 0.41
USP3-220ENST00000561381 CLTCL1P53675 1640 aa17.63■□□□□ 0.41
USP3-220ENST00000561381 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.63■□□□□ 0.41
USP3-220ENST00000561381 C19orf44Q9H6X5 657 aa17.62■□□□□ 0.41
USP3-220ENST00000561381 SETBP1Q9Y6X0 1596 aa17.62■□□□□ 0.41
USP3-220ENST00000561381 CADPS2Q86UW7 1296 aa17.61■□□□□ 0.41
USP3-220ENST00000561381 METP08581 1390 aa17.61■□□□□ 0.41
USP3-220ENST00000561381 ATF3P18847 181 aa17.6■□□□□ 0.41
USP3-220ENST00000561381 POTEAQ6S8J7 498 aa17.6■□□□□ 0.41
USP3-220ENST00000561381 TRIM52Q96A61 297 aa17.6■□□□□ 0.41
USP3-220ENST00000561381 NEXMIFQ5QGS0 1516 aa17.59■□□□□ 0.41
USP3-220ENST00000561381 HFM1A2PYH4 1435 aa17.59■□□□□ 0.41
USP3-220ENST00000561381 XRN1Q8IZH2 1706 aaKnown RBP17.58■□□□□ 0.41
USP3-220ENST00000561381 COL16A1Q07092 1604 aaPredicted RBP17.58■□□□□ 0.41
USP3-220ENST00000561381 JCADQ9P266 1359 aa17.58■□□□□ 0.4
USP3-220ENST00000561381 BRINP3Q76B58 766 aa17.55■□□□□ 0.4
USP3-220ENST00000561381 KIF1BO60333 1816 aa17.55■□□□□ 0.4
USP3-220ENST00000561381 SLC4A1APQ9BWU0 796 aaKnown RBP17.54■□□□□ 0.4
USP3-220ENST00000561381 U3KPZ7 1027 aaPredicted RBP17.54■□□□□ 0.4
USP3-220ENST00000561381 AHDC1Q5TGY3 1603 aaPredicted RBP17.54■□□□□ 0.4
USP3-220ENST00000561381 LRP6O75581 1613 aa17.52■□□□□ 0.4
USP3-220ENST00000561381 DCCP43146 1447 aa17.52■□□□□ 0.4
USP3-220ENST00000561381 MST1RQ04912 1400 aa17.51■□□□□ 0.39
USP3-220ENST00000561381 SPATA31A6Q5VVP1 1343 aa17.49■□□□□ 0.39
USP3-220ENST00000561381 ASXL1Q8IXJ9 1541 aa17.49■□□□□ 0.39
USP3-220ENST00000561381 VGFO15240 615 aaPredicted RBP17.49■□□□□ 0.39
USP3-220ENST00000561381 ADGRL3Q9HAR2 1447 aa17.48■□□□□ 0.39
USP3-220ENST00000561381 SETD1AO15047 1707 aaKnown RBP17.47■□□□□ 0.39
USP3-220ENST00000561381 NALCNQ8IZF0 1738 aa17.47■□□□□ 0.39
USP3-220ENST00000561381 DDX17Q92841 729 aaKnown RBP17.47■□□□□ 0.39
USP3-220ENST00000561381 SHPRHQ149N8 1683 aa17.46■□□□□ 0.39
USP3-220ENST00000561381 ROBO2Q9HCK4 1378 aa17.46■□□□□ 0.39
USP3-220ENST00000561381 MEX3CQ5U5Q3 659 aaKnown RBP17.46■□□□□ 0.39
USP3-220ENST00000561381 RPGRIP1LQ68CZ1 1315 aa17.46■□□□□ 0.38
USP3-220ENST00000561381 PPLO60437 1756 aa17.44■□□□□ 0.38
USP3-220ENST00000561381 NUTM2BA6NNL0 878 aaPredicted RBP17.44■□□□□ 0.38
USP3-220ENST00000561381 NUTM2EB1AL46 878 aaPredicted RBP17.44■□□□□ 0.38
USP3-220ENST00000561381 NUTM2AQ8IVF1 878 aaPredicted RBP17.44■□□□□ 0.38
USP3-220ENST00000561381 PTCH1Q13635 1447 aa17.43■□□□□ 0.38
USP3-220ENST00000561381 SETD5Q9C0A6 1442 aa17.43■□□□□ 0.38
USP3-220ENST00000561381 NHSL1Q5SYE7 1610 aa17.43■□□□□ 0.38
USP3-220ENST00000561381 MPHOSPH9Q99550 1183 aa17.42■□□□□ 0.38
USP3-220ENST00000561381 C1orf167Q5SNV9 1468 aa17.42■□□□□ 0.38
USP3-220ENST00000561381 RGL3Q3MIN7 710 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms