RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	PADI6	Q6TGC4	694 aa		6.41	□□□□□ -1.38
SPG11-223	ENST00000560858	TTC13	Q8NBP0	860 aa		6.41	□□□□□ -1.38
SPG11-223	ENST00000560858	FAM187A	A6NFU0	413 aa		6.4	□□□□□ -1.38
SPG11-223	ENST00000560858	POTEC	B2RU33	542 aa		6.4	□□□□□ -1.38
SPG11-223	ENST00000560858	ZNF697	Q5TEC3	545 aa		6.4	□□□□□ -1.38
SPG11-223	ENST00000560858	BLOC1S3	Q6QNY0	202 aa		6.4	□□□□□ -1.38
SPG11-223	ENST00000560858	BBX	Q8WY36	941 aa	Predicted RBP	6.4	□□□□□ -1.38
SPG11-223	ENST00000560858	EYA1	Q99502	592 aa		6.4	□□□□□ -1.38
SPG11-223	ENST00000560858	TREML4	Q6UXN2	200 aa		6.39	□□□□□ -1.39
SPG11-223	ENST00000560858	NPDC1	Q9NQX5	325 aa	Predicted RBP	6.39	□□□□□ -1.39
SPG11-223	ENST00000560858	TNFRSF10A	O00220	468 aa		6.37	□□□□□ -1.39
SPG11-223	ENST00000560858	KMT5B	Q4FZB7	885 aa		6.37	□□□□□ -1.39
SPG11-223	ENST00000560858	LIAT1	Q6ZQX7	453 aa		6.37	□□□□□ -1.39
SPG11-223	ENST00000560858	SPRYD3	Q8NCJ5	442 aa		6.37	□□□□□ -1.39
SPG11-223	ENST00000560858	EMID1	Q96A84	441 aa	Predicted RBP	6.37	□□□□□ -1.39
SPG11-223	ENST00000560858	PPEF1	O14829	653 aa	Predicted RBP	6.36	□□□□□ -1.39
SPG11-223	ENST00000560858	S1PR4	O95977	384 aa		6.36	□□□□□ -1.39
SPG11-223	ENST00000560858	ACTN4	O43707	911 aa	Known RBP	6.35	□□□□□ -1.39
SPG11-223	ENST00000560858	GDF9	O60383	454 aa		6.35	□□□□□ -1.39
SPG11-223	ENST00000560858	DNAJB2	P25686	324 aa		6.35	□□□□□ -1.39
SPG11-223	ENST00000560858	RBM46	Q8TBY0	533 aa	Known RBP	6.35	□□□□□ -1.39
SPG11-223	ENST00000560858	TLL1	O43897	1013 aa		6.34	□□□□□ -1.39
SPG11-223	ENST00000560858	NR1I2	O75469	434 aa		6.34	□□□□□ -1.39
SPG11-223	ENST00000560858	AAAS	Q9NRG9	546 aa		6.34	□□□□□ -1.39
SPG11-223	ENST00000560858	ST8SIA5	O15466	376 aa		6.33	□□□□□ -1.4
SPG11-223	ENST00000560858	LMOD2	Q6P5Q4	547 aa		6.33	□□□□□ -1.4
SPG11-223	ENST00000560858	SLC6A16	Q9GZN6	736 aa		6.33	□□□□□ -1.4
SPG11-223	ENST00000560858	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	6.33	□□□□□ -1.4
SPG11-223	ENST00000560858	ADH1B	P00325	375 aa		6.32	□□□□□ -1.4
SPG11-223	ENST00000560858	TMEM134	Q9H6X4	195 aa		6.32	□□□□□ -1.4
SPG11-223	ENST00000560858	CFH	P08603	1231 aa		6.31	□□□□□ -1.4
SPG11-223	ENST00000560858	FOXC1	Q12948	553 aa		6.31	□□□□□ -1.4
SPG11-223	ENST00000560858	LCE2A	Q5TA79	106 aa	Predicted RBP	6.31	□□□□□ -1.4
SPG11-223	ENST00000560858	WFS1	O76024	890 aa		6.3	□□□□□ -1.4
SPG11-223	ENST00000560858	CD2BP2	O95400	341 aa	Known RBP	6.3	□□□□□ -1.4
SPG11-223	ENST00000560858	RSPH4A	Q5TD94	716 aa		6.3	□□□□□ -1.4
SPG11-223	ENST00000560858	SCUBE3	Q8IX30	993 aa		6.3	□□□□□ -1.4
SPG11-223	ENST00000560858	CRIPAK	Q8N1N5	446 aa		6.3	□□□□□ -1.4
SPG11-223	ENST00000560858	RCCD1	A6NED2	376 aa		6.29	□□□□□ -1.4
SPG11-223	ENST00000560858	C11orf95	C9JLR9	678 aa	Predicted RBP	6.29	□□□□□ -1.4
SPG11-223	ENST00000560858	AXIN1	O15169	862 aa		6.28	□□□□□ -1.4
SPG11-223	ENST00000560858	INSM1	Q01101	510 aa	Predicted RBP	6.28	□□□□□ -1.4
SPG11-223	ENST00000560858	PTGDR	Q13258	359 aa		6.28	□□□□□ -1.4
SPG11-223	ENST00000560858	STK17A	Q9UEE5	414 aa		6.28	□□□□□ -1.4
SPG11-223	ENST00000560858	RPIA	P49247	311 aa		6.27	□□□□□ -1.41
SPG11-223	ENST00000560858	CTC1	Q2NKJ3	1217 aa		6.27	□□□□□ -1.41
SPG11-223	ENST00000560858	PLA2G2C	Q5R387	149 aa		6.27	□□□□□ -1.41
SPG11-223	ENST00000560858	CYP4X1	Q8N118	509 aa		6.27	□□□□□ -1.41
SPG11-223	ENST00000560858	SPSB2	Q99619	263 aa		6.27	□□□□□ -1.41
SPG11-223	ENST00000560858	PKD2L1	Q9P0L9	805 aa		6.27	□□□□□ -1.41
SPG11-223	ENST00000560858	ADGRG1	Q9Y653	693 aa		6.27	□□□□□ -1.41
SPG11-223	ENST00000560858	AVP	P01185	164 aa		6.26	□□□□□ -1.41
SPG11-223	ENST00000560858	SLC10A3	P09131	477 aa		6.25	□□□□□ -1.41
SPG11-223	ENST00000560858	GMPR2	Q9P2T1	348 aa	Known RBP	6.25	□□□□□ -1.41
SPG11-223	ENST00000560858	DACH1	Q9UI36	760 aa		6.25	□□□□□ -1.41
SPG11-223	ENST00000560858	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	6.24	□□□□□ -1.41
SPG11-223	ENST00000560858	CFAP44	Q96MT7	982 aa		6.24	□□□□□ -1.41
SPG11-223	ENST00000560858	TOR4A	Q9NXH8	423 aa		6.24	□□□□□ -1.41
SPG11-223	ENST00000560858	NUTM2F	A1L443	756 aa		6.23	□□□□□ -1.41
SPG11-223	ENST00000560858	TTC24	A2A3L6	582 aa	Predicted RBP	6.23	□□□□□ -1.41
SPG11-223	ENST00000560858	WIPF1	O43516	503 aa		6.23	□□□□□ -1.41
SPG11-223	ENST00000560858	OAT	P04181	439 aa		6.23	□□□□□ -1.41
SPG11-223	ENST00000560858	SMCP	P49901	116 aa	Predicted RBP	6.23	□□□□□ -1.41
SPG11-223	ENST00000560858	ARHGEF1	Q92888	912 aa	Known RBP	6.23	□□□□□ -1.41
SPG11-223	ENST00000560858	ZBTB24	O43167	697 aa	Predicted RBP	6.22	□□□□□ -1.41
SPG11-223	ENST00000560858	MLLT3	P42568	568 aa	Predicted RBP	6.22	□□□□□ -1.41
SPG11-223	ENST00000560858	NFX1	Q12986	1120 aa	Known RBP	6.22	□□□□□ -1.41
SPG11-223	ENST00000560858	FAM161A	Q3B820	660 aa		6.22	□□□□□ -1.41
SPG11-223	ENST00000560858	PUS10	Q3MIT2	529 aa	Known RBP	6.22	□□□□□ -1.41
SPG11-223	ENST00000560858	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	6.22	□□□□□ -1.41
SPG11-223	ENST00000560858	FCF1	Q9Y324	198 aa	Known RBP	6.2	□□□□□ -1.42
SPG11-223	ENST00000560858	FCHSD2	O94868	740 aa		6.19	□□□□□ -1.42
SPG11-223	ENST00000560858	FMNL1	O95466	1100 aa	Predicted RBP	6.19	□□□□□ -1.42
SPG11-223	ENST00000560858	FAM181B	A6NEQ2	426 aa		6.18	□□□□□ -1.42
SPG11-223	ENST00000560858	PXYLP1	Q8TE99	480 aa		6.18	□□□□□ -1.42
SPG11-223	ENST00000560858	SENP2	Q9HC62	589 aa		6.18	□□□□□ -1.42
SPG11-223	ENST00000560858	TERT	O14746	1132 aa	Known RBP	6.17	□□□□□ -1.42
SPG11-223	ENST00000560858	ATP6V1A	P38606	617 aa		6.17	□□□□□ -1.42
SPG11-223	ENST00000560858	SNIP1	Q8TAD8	396 aa	Known RBP	6.17	□□□□□ -1.42
SPG11-223	ENST00000560858	MORN1	Q5T089	497 aa		6.16	□□□□□ -1.42
SPG11-223	ENST00000560858	RDH13	Q8NBN7	331 aa		6.16	□□□□□ -1.42
SPG11-223	ENST00000560858	ATP13A2	Q9NQ11	1180 aa		6.16	□□□□□ -1.42
SPG11-223	ENST00000560858	SALL2	Q9Y467	1007 aa	Predicted RBP	6.16	□□□□□ -1.42
SPG11-223	ENST00000560858	WNT7A	O00755	349 aa		6.15	□□□□□ -1.42
SPG11-223	ENST00000560858	FAM160A2	Q8N612	972 aa	Predicted RBP	6.15	□□□□□ -1.42
SPG11-223	ENST00000560858	THAP11	Q96EK4	314 aa		6.15	□□□□□ -1.42
SPG11-223	ENST00000560858	SNRPB	P14678	240 aa	Known RBP	6.14	□□□□□ -1.43
SPG11-223	ENST00000560858	FUT2	Q10981	343 aa		6.14	□□□□□ -1.43
SPG11-223	ENST00000560858	METTL3	Q86U44	580 aa	Known RBP	6.14	□□□□□ -1.43
SPG11-223	ENST00000560858	SLC16A10	Q8TF71	515 aa		6.14	□□□□□ -1.43
SPG11-223	ENST00000560858	KIFC2	Q96AC6	838 aa		6.14	□□□□□ -1.43
SPG11-223	ENST00000560858	TRIM47	Q96LD4	638 aa		6.14	□□□□□ -1.43
SPG11-223	ENST00000560858	DAXX	Q9UER7	740 aa	Predicted RBP	6.14	□□□□□ -1.43
SPG11-223	ENST00000560858	SLC27A5	Q9Y2P5	690 aa		6.14	□□□□□ -1.43
SPG11-223	ENST00000560858	SMPD1	P17405	629 aa		6.13	□□□□□ -1.43
SPG11-223	ENST00000560858	GRIPAP1	Q4V328	841 aa		6.13	□□□□□ -1.43
SPG11-223	ENST00000560858	DDX11L8	A8MPP1	907 aa		6.12	□□□□□ -1.43
SPG11-223	ENST00000560858	HIC1	Q14526	733 aa		6.12	□□□□□ -1.43
SPG11-223	ENST00000560858	BRICD5	Q6PL45	260 aa		6.12	□□□□□ -1.43
SPG11-223	ENST00000560858	SULF1	Q8IWU6	871 aa		6.12	□□□□□ -1.43

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