RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 PREX1Q8TCU6 1659 aa17.91■□□□□ 0.46
SNX1-211ENST00000560829 IDI1Q13907 227 aa17.9■□□□□ 0.46
SNX1-211ENST00000560829 IQGAP1P46940 1657 aa17.89■□□□□ 0.46
SNX1-211ENST00000560829 CHGAP10645 457 aaKnown RBP17.89■□□□□ 0.45
SNX1-211ENST00000560829 PIK3C2GO75747 1445 aa17.89■□□□□ 0.45
SNX1-211ENST00000560829 YTHDC1Q96MU7 727 aaKnown RBP17.88■□□□□ 0.45
SNX1-211ENST00000560829 SPATA31D1Q6ZQQ2 1576 aa17.87■□□□□ 0.45
SNX1-211ENST00000560829 PPLO60437 1756 aa17.87■□□□□ 0.45
SNX1-211ENST00000560829 ZFYVE9O95405 1425 aa17.86■□□□□ 0.45
SNX1-211ENST00000560829 CLTCQ00610 1675 aaKnown RBP17.86■□□□□ 0.45
SNX1-211ENST00000560829 NEXMIFQ5QGS0 1516 aa17.86■□□□□ 0.45
SNX1-211ENST00000560829 CFAP70Q5T0N1 1121 aa17.86■□□□□ 0.45
SNX1-211ENST00000560829 SETBP1Q9Y6X0 1596 aa17.85■□□□□ 0.45
SNX1-211ENST00000560829 FBXO31Q5XUX0 539 aaPredicted RBP17.85■□□□□ 0.45
SNX1-211ENST00000560829 EIF3AQ14152 1382 aaKnown RBP17.84■□□□□ 0.45
SNX1-211ENST00000560829 DNAJC5Q9H3Z4 198 aa17.84■□□□□ 0.45
SNX1-211ENST00000560829 C14orf93Q9H972 538 aaKnown RBP17.84■□□□□ 0.45
SNX1-211ENST00000560829 TMEM131LA2VDJ0 1609 aa17.83■□□□□ 0.44
SNX1-211ENST00000560829 VGFO15240 615 aaPredicted RBP17.83■□□□□ 0.44
SNX1-211ENST00000560829 PRKRIP1Q9H875 184 aaPredicted RBP17.83■□□□□ 0.44
SNX1-211ENST00000560829 TMF1P82094 1093 aa17.82■□□□□ 0.44
SNX1-211ENST00000560829 MLECQ14165 292 aa17.82■□□□□ 0.44
SNX1-211ENST00000560829 CFAP65Q6ZU64 1925 aaKnown RBP17.82■□□□□ 0.44
SNX1-211ENST00000560829 DISP3Q9P2K9 1392 aa17.82■□□□□ 0.44
SNX1-211ENST00000560829 TRHP20396 242 aaPredicted RBP17.82■□□□□ 0.44
SNX1-211ENST00000560829 ZMYM3Q14202 1370 aa17.81■□□□□ 0.44
SNX1-211ENST00000560829 ADGRB1O14514 1584 aa17.8■□□□□ 0.44
SNX1-211ENST00000560829 POLR3GLQ9BT43 218 aa17.8■□□□□ 0.44
SNX1-211ENST00000560829 SLC24A1O60721 1099 aa17.8■□□□□ 0.44
SNX1-211ENST00000560829 ESF1Q9H501 851 aaKnown RBP17.79■□□□□ 0.44
SNX1-211ENST00000560829 SBNO2Q9Y2G9 1366 aa17.78■□□□□ 0.44
SNX1-211ENST00000560829 MYO3AQ8NEV4 1616 aa17.76■□□□□ 0.43
SNX1-211ENST00000560829 CDCA8Q53HL2 280 aa17.75■□□□□ 0.43
SNX1-211ENST00000560829 A2ML1A8K2U0 1454 aa17.75■□□□□ 0.43
SNX1-211ENST00000560829 KTN1Q86UP2 1357 aaKnown RBP17.73■□□□□ 0.43
SNX1-211ENST00000560829 PER1O15534 1290 aaPredicted RBP17.71■□□□□ 0.43
SNX1-211ENST00000560829 STAG3Q9UJ98 1225 aa17.71■□□□□ 0.43
SNX1-211ENST00000560829 TNRQ92752 1358 aa17.71■□□□□ 0.42
SNX1-211ENST00000560829 NUTM2DQ5VT03 806 aaPredicted RBP17.7■□□□□ 0.42
SNX1-211ENST00000560829 CENPJQ9HC77 1338 aaPredicted RBP17.7■□□□□ 0.42
SNX1-211ENST00000560829 MYO5BQ9ULV0 1848 aa17.69■□□□□ 0.42
SNX1-211ENST00000560829 TMEM132EQ6IEE7 984 aa17.68■□□□□ 0.42
SNX1-211ENST00000560829 ASXL1Q8IXJ9 1541 aa17.68■□□□□ 0.42
SNX1-211ENST00000560829 RIMS2Q9UQ26 1411 aa17.67■□□□□ 0.42
SNX1-211ENST00000560829 RALBP1Q15311 655 aa17.67■□□□□ 0.42
SNX1-211ENST00000560829 TRAK1Q9UPV9 953 aa17.67■□□□□ 0.42
SNX1-211ENST00000560829 KDM5AP29375 1690 aaKnown RBP17.67■□□□□ 0.42
SNX1-211ENST00000560829 CCDC184Q52MB2 194 aa17.65■□□□□ 0.42
SNX1-211ENST00000560829 PANK3Q9H999 370 aa17.65■□□□□ 0.42
SNX1-211ENST00000560829 NLRP1Q9C000 1473 aa17.64■□□□□ 0.41
SNX1-211ENST00000560829 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.64■□□□□ 0.41
SNX1-211ENST00000560829 MRS2Q9HD23 443 aa17.64■□□□□ 0.41
SNX1-211ENST00000560829 PARD3Q8TEW0 1356 aa17.64■□□□□ 0.41
SNX1-211ENST00000560829 ALKQ9UM73 1620 aa17.63■□□□□ 0.41
SNX1-211ENST00000560829 PUS7Q96PZ0 661 aaKnown RBP17.62■□□□□ 0.41
SNX1-211ENST00000560829 MYBBP1AQ9BQG0 1328 aaKnown RBP17.61■□□□□ 0.41
SNX1-211ENST00000560829 ARHGEF28Q8N1W1 1705 aaKnown RBP17.61■□□□□ 0.41
SNX1-211ENST00000560829 YTHDC2Q9H6S0 1430 aaKnown RBP17.61■□□□□ 0.41
SNX1-211ENST00000560829 MYOM1P52179 1685 aa17.6■□□□□ 0.41
SNX1-211ENST00000560829 QRICH2Q9H0J4 1663 aa17.6■□□□□ 0.41
SNX1-211ENST00000560829 HDGFP51858 240 aaKnown RBP17.6■□□□□ 0.41
SNX1-211ENST00000560829 SCAF1Q9H7N4 1312 aaKnown RBP17.6■□□□□ 0.41
SNX1-211ENST00000560829 TMEM2Q9UHN6 1383 aa17.59■□□□□ 0.41
SNX1-211ENST00000560829 PTPRMP28827 1452 aa17.59■□□□□ 0.41
SNX1-211ENST00000560829 BRD4O60885 1362 aaPredicted RBP17.59■□□□□ 0.41
SNX1-211ENST00000560829 NPC1L1Q9UHC9 1359 aa17.58■□□□□ 0.4
SNX1-211ENST00000560829 UBR1Q8IWV7 1749 aa17.58■□□□□ 0.4
SNX1-211ENST00000560829 C3P01024 1663 aa17.57■□□□□ 0.4
SNX1-211ENST00000560829 FER1L4A9Z1Z3 1794 aa17.57■□□□□ 0.4
SNX1-211ENST00000560829 CEBPAP49715 358 aaPredicted RBP17.56■□□□□ 0.4
SNX1-211ENST00000560829 DLC1Q96QB1 1528 aa17.56■□□□□ 0.4
SNX1-211ENST00000560829 LRPPRCP42704 1394 aaKnown RBP17.55■□□□□ 0.4
SNX1-211ENST00000560829 NRXN3Q9Y4C0 1643 aa17.55■□□□□ 0.4
SNX1-211ENST00000560829 SETD1AO15047 1707 aaKnown RBP17.55■□□□□ 0.4
SNX1-211ENST00000560829 AMER1Q5JTC6 1135 aaPredicted RBP17.55■□□□□ 0.4
SNX1-211ENST00000560829 KNSTRNQ9Y448 316 aa17.55■□□□□ 0.4
SNX1-211ENST00000560829 TULP4Q9NRJ4 1543 aa17.55■□□□□ 0.4
SNX1-211ENST00000560829 EVC2Q86UK5 1308 aa17.55■□□□□ 0.4
SNX1-211ENST00000560829 NLRP13Q86W25 1043 aa17.54■□□□□ 0.4
SNX1-211ENST00000560829 ABCC11Q96J66 1382 aa17.54■□□□□ 0.4
SNX1-211ENST00000560829 CNGB1Q14028 1251 aaPredicted RBP17.54■□□□□ 0.4
SNX1-211ENST00000560829 STK26Q9P289 416 aa17.53■□□□□ 0.4
SNX1-211ENST00000560829 FAM9BQ8IZU0 186 aa17.52■□□□□ 0.4
SNX1-211ENST00000560829 GTF3C3Q9Y5Q9 886 aa17.52■□□□□ 0.4
SNX1-211ENST00000560829 HNRNPUQ00839 825 aaKnown RBP eCLIP17.52■□□□□ 0.39
SNX1-211ENST00000560829 CC2D1BQ5T0F9 858 aaKnown RBP17.52■□□□□ 0.39
SNX1-211ENST00000560829 TMC1Q8TDI8 760 aa17.52■□□□□ 0.39
SNX1-211ENST00000560829 PNISRQ8TF01 805 aaKnown RBP17.52■□□□□ 0.39
SNX1-211ENST00000560829 ARHGAP23Q9P227 1491 aa17.52■□□□□ 0.39
SNX1-211ENST00000560829 SLIT1O75093 1534 aa17.51■□□□□ 0.39
SNX1-211ENST00000560829 PRAM1Q96QH2 718 aa17.51■□□□□ 0.39
SNX1-211ENST00000560829 PLEKHG1Q9ULL1 1385 aa17.5■□□□□ 0.39
SNX1-211ENST00000560829 TECPR2O15040 1411 aa17.49■□□□□ 0.39
SNX1-211ENST00000560829 METP08581 1390 aa17.49■□□□□ 0.39
SNX1-211ENST00000560829 NINLQ9Y2I6 1382 aa17.49■□□□□ 0.39
SNX1-211ENST00000560829 SIRT1Q96EB6 747 aa17.48■□□□□ 0.39
SNX1-211ENST00000560829 CARD14Q9BXL6 1004 aa17.48■□□□□ 0.39
SNX1-211ENST00000560829 SENP3Q9H4L4 574 aaPredicted RBP17.48■□□□□ 0.39
SNX1-211ENST00000560829 POGKQ9P215 609 aa17.48■□□□□ 0.39
SNX1-211ENST00000560829 ADAMTS13Q76LX8 1427 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms