RNA–Protein interactions for RNA: ENST00000560444.1

PIF1-208, Transcript of PIF1 5'-to-3' DNA helicase, human

TSL 2

Gene PIF1, Length 1,631 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PIF1-208	ENST00000560444	SYNM	O15061	1565 aa		32.84	■■■□□ 2.85
PIF1-208	ENST00000560444	SCAF11	Q99590	1463 aa	Known RBP	32.83	■■■□□ 2.85
PIF1-208	ENST00000560444	TESK2	Q96S53	571 aa		32.83	■■■□□ 2.85
PIF1-208	ENST00000560444	ADGRF5	Q8IZF2	1346 aa		32.83	■■■□□ 2.85
PIF1-208	ENST00000560444	POLR3GL	Q9BT43	218 aa		32.81	■■■□□ 2.84
PIF1-208	ENST00000560444	PRKRIP1	Q9H875	184 aa	Predicted RBP	32.8	■■■□□ 2.84
PIF1-208	ENST00000560444	CFAP65	Q6ZU64	1925 aa	Known RBP	32.79	■■■□□ 2.84
PIF1-208	ENST00000560444	IQGAP1	P46940	1657 aa		32.78	■■■□□ 2.84
PIF1-208	ENST00000560444	TMF1	P82094	1093 aa		32.77	■■■□□ 2.84
PIF1-208	ENST00000560444	IDI1	Q13907	227 aa		32.77	■■■□□ 2.84
PIF1-208	ENST00000560444	PREX1	Q8TCU6	1659 aa		32.76	■■■□□ 2.83
PIF1-208	ENST00000560444	EIF3A	Q14152	1382 aa	Known RBP	32.75	■■■□□ 2.83
PIF1-208	ENST00000560444	SLC24A1	O60721	1099 aa		32.75	■■■□□ 2.83
PIF1-208	ENST00000560444	CFAP70	Q5T0N1	1121 aa		32.75	■■■□□ 2.83
PIF1-208	ENST00000560444	PPL	O60437	1756 aa		32.74	■■■□□ 2.83
PIF1-208	ENST00000560444	VGF	O15240	615 aa	Predicted RBP	32.72	■■■□□ 2.83
PIF1-208	ENST00000560444	CLTC	Q00610	1675 aa	Known RBP	32.72	■■■□□ 2.83
PIF1-208	ENST00000560444	ERVK-7	P63135	1459 aa		32.71	■■■□□ 2.83
PIF1-208	ENST00000560444	PIK3C2G	O75747	1445 aa		32.71	■■■□□ 2.83
PIF1-208	ENST00000560444	ESF1	Q9H501	851 aa	Known RBP	32.7	■■■□□ 2.83
PIF1-208	ENST00000560444	C14orf93	Q9H972	538 aa	Known RBP	32.7	■■■□□ 2.83
PIF1-208	ENST00000560444	SETBP1	Q9Y6X0	1596 aa		32.69	■■■□□ 2.82
PIF1-208	ENST00000560444	DISP3	Q9P2K9	1392 aa		32.67	■■■□□ 2.82
PIF1-208	ENST00000560444	ZFYVE9	O95405	1425 aa		32.67	■■■□□ 2.82
PIF1-208	ENST00000560444	CDCA8	Q53HL2	280 aa		32.66	■■■□□ 2.82
PIF1-208	ENST00000560444	FBXO31	Q5XUX0	539 aa	Predicted RBP	32.66	■■■□□ 2.82
PIF1-208	ENST00000560444	NEXMIF	Q5QGS0	1516 aa		32.65	■■■□□ 2.82
PIF1-208	ENST00000560444	SPATA31D1	Q6ZQQ2	1576 aa		32.62	■■■□□ 2.81
PIF1-208	ENST00000560444	TMEM131L	A2VDJ0	1609 aa		32.61	■■■□□ 2.81
PIF1-208	ENST00000560444	KTN1	Q86UP2	1357 aa	Known RBP	32.61	■■■□□ 2.81
PIF1-208	ENST00000560444	ZMYM3	Q14202	1370 aa		32.57	■■■□□ 2.8
PIF1-208	ENST00000560444	SCAF1	Q9H7N4	1312 aa	Known RBP	32.56	■■■□□ 2.8
PIF1-208	ENST00000560444	ADGRB1	O14514	1584 aa		32.53	■■■□□ 2.8
PIF1-208	ENST00000560444	SBNO2	Q9Y2G9	1366 aa		32.53	■■■□□ 2.8
PIF1-208	ENST00000560444	RALBP1	Q15311	655 aa		32.52	■■■□□ 2.8
PIF1-208	ENST00000560444	PER1	O15534	1290 aa	Predicted RBP	32.51	■■■□□ 2.8
PIF1-208	ENST00000560444	STAG3	Q9UJ98	1225 aa		32.51	■■■□□ 2.79
PIF1-208	ENST00000560444	MYO3A	Q8NEV4	1616 aa		32.5	■■■□□ 2.79
PIF1-208	ENST00000560444	MRS2	Q9HD23	443 aa		32.5	■■■□□ 2.79
PIF1-208	ENST00000560444	FER1L4	A9Z1Z3	1794 aa		32.48	■■■□□ 2.79
PIF1-208	ENST00000560444	CCDC184	Q52MB2	194 aa		32.47	■■■□□ 2.79
PIF1-208	ENST00000560444	PANK3	Q9H999	370 aa		32.47	■■■□□ 2.79
PIF1-208	ENST00000560444	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.47	■■■□□ 2.79
PIF1-208	ENST00000560444	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.45	■■■□□ 2.79
PIF1-208	ENST00000560444	GTF3C3	Q9Y5Q9	886 aa		32.45	■■■□□ 2.79
PIF1-208	ENST00000560444	A2ML1	A8K2U0	1454 aa		32.43	■■■□□ 2.78
PIF1-208	ENST00000560444	CEBPA	P49715	358 aa	Predicted RBP	32.43	■■■□□ 2.78
PIF1-208	ENST00000560444	MYO5B	Q9ULV0	1848 aa		32.42	■■■□□ 2.78
PIF1-208	ENST00000560444	TMEM132E	Q6IEE7	984 aa		32.42	■■■□□ 2.78
PIF1-208	ENST00000560444	TRAK1	Q9UPV9	953 aa		32.42	■■■□□ 2.78
PIF1-208	ENST00000560444	PLPPR3	Q6T4P5	718 aa		32.4	■■■□□ 2.78
PIF1-208	ENST00000560444	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32.39	■■■□□ 2.78
PIF1-208	ENST00000560444	PARD3	Q8TEW0	1356 aa		32.37	■■■□□ 2.77
PIF1-208	ENST00000560444	KDM5A	P29375	1690 aa	Known RBP	32.36	■■■□□ 2.77
PIF1-208	ENST00000560444	TNR	Q92752	1358 aa		32.36	■■■□□ 2.77
PIF1-208	ENST00000560444	C3	P01024	1663 aa		32.36	■■■□□ 2.77
PIF1-208	ENST00000560444	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.34	■■■□□ 2.77
PIF1-208	ENST00000560444	ADAMTSL3	P82987	1691 aa		32.34	■■■□□ 2.77
PIF1-208	ENST00000560444	BRD4	O60885	1362 aa	Predicted RBP	32.34	■■■□□ 2.77
PIF1-208	ENST00000560444	RIMS2	Q9UQ26	1411 aa		32.34	■■■□□ 2.77
PIF1-208	ENST00000560444	RIMS1	Q86UR5	1692 aa	Known RBP	32.33	■■■□□ 2.77
PIF1-208	ENST00000560444	HDGF	P51858	240 aa	Known RBP	32.33	■■■□□ 2.77
PIF1-208	ENST00000560444	CNGB1	Q14028	1251 aa	Predicted RBP	32.33	■■■□□ 2.77
PIF1-208	ENST00000560444	PUS7	Q96PZ0	661 aa	Known RBP	32.33	■■■□□ 2.77
PIF1-208	ENST00000560444	FAM9B	Q8IZU0	186 aa		32.31	■■■□□ 2.76
PIF1-208	ENST00000560444	HNRNPU	Q00839	825 aa	Known RBP eCLIP	32.3	■■■□□ 2.76
PIF1-208	ENST00000560444	TMC1	Q8TDI8	760 aa		32.3	■■■□□ 2.76
PIF1-208	ENST00000560444	KNSTRN	Q9Y448	316 aa		32.3	■■■□□ 2.76
PIF1-208	ENST00000560444	QRICH2	Q9H0J4	1663 aa		32.28	■■■□□ 2.76
PIF1-208	ENST00000560444	NLRP13	Q86W25	1043 aa		32.27	■■■□□ 2.76
PIF1-208	ENST00000560444	ALK	Q9UM73	1620 aa		32.27	■■■□□ 2.76
PIF1-208	ENST00000560444	ASXL1	Q8IXJ9	1541 aa		32.26	■■■□□ 2.76
PIF1-208	ENST00000560444	MYOM1	P52179	1685 aa		32.25	■■■□□ 2.75
PIF1-208	ENST00000560444	NPC1L1	Q9UHC9	1359 aa		32.25	■■■□□ 2.75
PIF1-208	ENST00000560444	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.24	■■■□□ 2.75
PIF1-208	ENST00000560444	PNISR	Q8TF01	805 aa	Known RBP	32.23	■■■□□ 2.75
PIF1-208	ENST00000560444	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.23	■■■□□ 2.75
PIF1-208	ENST00000560444	CC2D1B	Q5T0F9	858 aa	Known RBP	32.22	■■■□□ 2.75
PIF1-208	ENST00000560444	EVC2	Q86UK5	1308 aa		32.22	■■■□□ 2.75
PIF1-208	ENST00000560444	NLRP1	Q9C000	1473 aa		32.22	■■■□□ 2.75
PIF1-208	ENST00000560444	AMER1	Q5JTC6	1135 aa	Predicted RBP	32.2	■■■□□ 2.75
PIF1-208	ENST00000560444	STK26	Q9P289	416 aa		32.18	■■■□□ 2.74
PIF1-208	ENST00000560444	PTPRM	P28827	1452 aa		32.16	■■■□□ 2.74
PIF1-208	ENST00000560444	TMEM2	Q9UHN6	1383 aa		32.16	■■■□□ 2.74
PIF1-208	ENST00000560444	LRPPRC	P42704	1394 aa	Known RBP	32.13	■■■□□ 2.73
PIF1-208	ENST00000560444	UBR1	Q8IWV7	1749 aa		32.13	■■■□□ 2.73
PIF1-208	ENST00000560444	ZBED9	Q6R2W3	1325 aa		32.13	■■■□□ 2.73
PIF1-208	ENST00000560444	DLC1	Q96QB1	1528 aa		32.12	■■■□□ 2.73
PIF1-208	ENST00000560444	POGK	Q9P215	609 aa		32.11	■■■□□ 2.73
PIF1-208	ENST00000560444	PRAM1	Q96QH2	718 aa		32.1	■■■□□ 2.73
PIF1-208	ENST00000560444	TULP4	Q9NRJ4	1543 aa		32.1	■■■□□ 2.73
PIF1-208	ENST00000560444	ABCC11	Q96J66	1382 aa		32.09	■■■□□ 2.73
PIF1-208	ENST00000560444	SENP3	Q9H4L4	574 aa	Predicted RBP	32.08	■■■□□ 2.73
PIF1-208	ENST00000560444	CARD14	Q9BXL6	1004 aa		32.08	■■■□□ 2.73
PIF1-208	ENST00000560444	SETD1A	O15047	1707 aa	Known RBP	32.06	■■■□□ 2.72
PIF1-208	ENST00000560444	NINL	Q9Y2I6	1382 aa		32.06	■■■□□ 2.72
PIF1-208	ENST00000560444	NRXN3	Q9Y4C0	1643 aa		32.05	■■■□□ 2.72
PIF1-208	ENST00000560444	SLC12A5	Q9H2X9	1139 aa		32.04	■■■□□ 2.72
PIF1-208	ENST00000560444	SIRT1	Q96EB6	747 aa		32.04	■■■□□ 2.72
PIF1-208	ENST00000560444	INSR	P06213	1382 aa		32.03	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms