RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 RTN4Q9NQC3 1192 aaKnown RBP16.6■□□□□ 0.25
TRAF3-208ENST00000560371 SYNJ2O15056 1496 aa16.6■□□□□ 0.25
TRAF3-208ENST00000560371 RBM19Q9Y4C8 960 aaKnown RBP16.6■□□□□ 0.25
TRAF3-208ENST00000560371 FBXO3Q9UK99 471 aa16.59■□□□□ 0.25
TRAF3-208ENST00000560371 AFAP1Q8N556 730 aa16.59■□□□□ 0.25
TRAF3-208ENST00000560371 CHMP4CQ96CF2 233 aa16.59■□□□□ 0.25
TRAF3-208ENST00000560371 SYNE3Q6ZMZ3 975 aa16.59■□□□□ 0.25
TRAF3-208ENST00000560371 NLRP2Q9NX02 1062 aa16.59■□□□□ 0.25
TRAF3-208ENST00000560371 H3BQV1 296 aa16.59■□□□□ 0.25
TRAF3-208ENST00000560371 IFFO2Q5TF58 517 aa16.59■□□□□ 0.25
TRAF3-208ENST00000560371 RAD21O60216 631 aa16.59■□□□□ 0.25
TRAF3-208ENST00000560371 NUTM2GQ5VZR2 741 aa16.59■□□□□ 0.25
TRAF3-208ENST00000560371 FAM184AQ8NB25 1140 aa16.58■□□□□ 0.25
TRAF3-208ENST00000560371 APPP05067 770 aa16.58■□□□□ 0.24
TRAF3-208ENST00000560371 FKBP5Q13451 457 aaPredicted RBP16.58■□□□□ 0.24
TRAF3-208ENST00000560371 KLHL34Q8N239 644 aa16.58■□□□□ 0.24
TRAF3-208ENST00000560371 DIAPH3Q9NSV4 1193 aa16.58■□□□□ 0.24
TRAF3-208ENST00000560371 NLRP6P59044 892 aa16.58■□□□□ 0.24
TRAF3-208ENST00000560371 NCAPD3P42695 1498 aa16.58■□□□□ 0.24
TRAF3-208ENST00000560371 TXNDC2Q86VQ3 553 aa16.58■□□□□ 0.24
TRAF3-208ENST00000560371 FGD6Q6ZV73 1430 aa16.57■□□□□ 0.24
TRAF3-208ENST00000560371 CTDP1Q9Y5B0 961 aaPredicted RBP16.57■□□□□ 0.24
TRAF3-208ENST00000560371 PRKRIP1Q9H875 184 aaPredicted RBP16.57■□□□□ 0.24
TRAF3-208ENST00000560371 CPLX2Q6PUV4 134 aaKnown RBP16.57■□□□□ 0.24
TRAF3-208ENST00000560371 ANKRD50Q9ULJ7 1429 aa16.57■□□□□ 0.24
TRAF3-208ENST00000560371 ABTB2Q8N961 1025 aa16.56■□□□□ 0.24
TRAF3-208ENST00000560371 FOXD4L1Q9NU39 408 aa16.56■□□□□ 0.24
TRAF3-208ENST00000560371 HMOX1P09601 288 aa16.56■□□□□ 0.24
TRAF3-208ENST00000560371 TMEM132EQ6IEE7 984 aa16.56■□□□□ 0.24
TRAF3-208ENST00000560371 RUFY2Q8WXA3 655 aa16.56■□□□□ 0.24
TRAF3-208ENST00000560371 FBXW7Q969H0 707 aa16.56■□□□□ 0.24
TRAF3-208ENST00000560371 TSPYL4Q9UJ04 414 aa16.56■□□□□ 0.24
TRAF3-208ENST00000560371 TCEAL9Q9UHQ7 104 aa16.56■□□□□ 0.24
TRAF3-208ENST00000560371 GPRASP1Q5JY77 1395 aa16.56■□□□□ 0.24
TRAF3-208ENST00000560371 USP35Q9P2H5 1018 aa16.55■□□□□ 0.24
TRAF3-208ENST00000560371 CC2D2AQ9P2K1 1620 aa16.55■□□□□ 0.24
TRAF3-208ENST00000560371 IFIT2P09913 472 aaKnown RBP16.55■□□□□ 0.24
TRAF3-208ENST00000560371 ROCK1Q13464 1354 aa16.54■□□□□ 0.24
TRAF3-208ENST00000560371 PRG4Q92954 1404 aaPredicted RBP16.54■□□□□ 0.24
TRAF3-208ENST00000560371 CENPQQ7L2Z9 268 aaPredicted RBP16.54■□□□□ 0.24
TRAF3-208ENST00000560371 G3BP1Q13283 466 aaKnown RBP eCLIP16.54■□□□□ 0.24
TRAF3-208ENST00000560371 RBM33Q96EV2 1170 aaKnown RBP16.54■□□□□ 0.24
TRAF3-208ENST00000560371 PHF14O94880 888 aa16.54■□□□□ 0.24
TRAF3-208ENST00000560371 PLIN1O60240 522 aa16.53■□□□□ 0.24
TRAF3-208ENST00000560371 CABP2Q9NPB3 220 aa16.53■□□□□ 0.24
TRAF3-208ENST00000560371 RRBP1Q9P2E9 1410 aaKnown RBP16.53■□□□□ 0.24
TRAF3-208ENST00000560371 ESCO1Q5FWF5 840 aa16.53■□□□□ 0.24
TRAF3-208ENST00000560371 CEP89Q96ST8 783 aa16.53■□□□□ 0.24
TRAF3-208ENST00000560371 DDX19BQ9UMR2 479 aa16.53■□□□□ 0.24
TRAF3-208ENST00000560371 PROSER2Q86WR7 435 aaPredicted RBP16.53■□□□□ 0.24
TRAF3-208ENST00000560371 RUNDC1Q96C34 613 aa16.53■□□□□ 0.24
TRAF3-208ENST00000560371 COG6Q9Y2V7 657 aa16.53■□□□□ 0.24
TRAF3-208ENST00000560371 API5Q9BZZ5 524 aaKnown RBP16.53■□□□□ 0.24
TRAF3-208ENST00000560371 RIC3Q7Z5B4 369 aa16.53■□□□□ 0.24
TRAF3-208ENST00000560371 PES1O00541 588 aaKnown RBP16.52■□□□□ 0.23
TRAF3-208ENST00000560371 TRDNQ13061 729 aa16.52■□□□□ 0.23
TRAF3-208ENST00000560371 THEMISQ8N1K5 641 aaPredicted RBP16.52■□□□□ 0.23
TRAF3-208ENST00000560371 GGNBP2Q9H3C7 697 aa16.51■□□□□ 0.23
TRAF3-208ENST00000560371 FOXD4L5Q5VV16 416 aaPredicted RBP16.51■□□□□ 0.23
TRAF3-208ENST00000560371 FOXD4L4Q8WXT5 416 aaPredicted RBP16.51■□□□□ 0.23
TRAF3-208ENST00000560371 FYCO1Q9BQS8 1478 aa16.51■□□□□ 0.23
TRAF3-208ENST00000560371 ZKSCAN1P17029 563 aaPredicted RBP16.51■□□□□ 0.23
TRAF3-208ENST00000560371 KIF21BO75037 1637 aa16.51■□□□□ 0.23
TRAF3-208ENST00000560371 TPD52L1Q16890 204 aaPredicted RBP16.5■□□□□ 0.23
TRAF3-208ENST00000560371 LRRC9Q6ZRR7 1453 aa16.5■□□□□ 0.23
TRAF3-208ENST00000560371 GNAI1P63096 354 aa16.5■□□□□ 0.23
TRAF3-208ENST00000560371 MRC2Q9UBG0 1479 aa16.5■□□□□ 0.23
TRAF3-208ENST00000560371 AIMP1Q12904 312 aaKnown RBP16.5■□□□□ 0.23
TRAF3-208ENST00000560371 DCAF8L1A6NGE4 600 aa16.49■□□□□ 0.23
TRAF3-208ENST00000560371 ATP6V1DQ9Y5K8 247 aa16.49■□□□□ 0.23
TRAF3-208ENST00000560371 REC8O95072 547 aa16.49■□□□□ 0.23
TRAF3-208ENST00000560371 MCTP1Q6DN14 999 aa16.49■□□□□ 0.23
TRAF3-208ENST00000560371 DHX16O60231 1041 aaKnown RBP16.49■□□□□ 0.23
TRAF3-208ENST00000560371 TRIM29Q14134 588 aa16.48■□□□□ 0.23
TRAF3-208ENST00000560371 NESP48681 1621 aa16.48■□□□□ 0.23
TRAF3-208ENST00000560371 ZBED9Q6R2W3 1325 aa16.48■□□□□ 0.23
TRAF3-208ENST00000560371 DZIP1LQ8IYY4 767 aaKnown RBP16.48■□□□□ 0.23
TRAF3-208ENST00000560371 NCOA2Q15596 1464 aa16.48■□□□□ 0.23
TRAF3-208ENST00000560371 CASKIN1Q8WXD9 1431 aa16.47■□□□□ 0.23
TRAF3-208ENST00000560371 A0A0U1RQG5 324 aaPredicted RBP16.47■□□□□ 0.23
TRAF3-208ENST00000560371 CPLX1O14810 134 aa16.46■□□□□ 0.23
TRAF3-208ENST00000560371 STRN4Q9NRL3 753 aa16.46■□□□□ 0.23
TRAF3-208ENST00000560371 RRP1P56182 461 aaKnown RBP16.46■□□□□ 0.23
TRAF3-208ENST00000560371 TSR1Q2NL82 804 aaKnown RBP16.46■□□□□ 0.23
TRAF3-208ENST00000560371 RNF20Q5VTR2 975 aa16.46■□□□□ 0.23
TRAF3-208ENST00000560371 CRBNQ96SW2 442 aa16.46■□□□□ 0.23
TRAF3-208ENST00000560371 WASHC2AQ641Q2 1341 aa16.46■□□□□ 0.22
TRAF3-208ENST00000560371 ERICH2A1L162 156 aa16.45■□□□□ 0.22
TRAF3-208ENST00000560371 CWC22Q9HCG8 908 aaKnown RBP16.45■□□□□ 0.22
TRAF3-208ENST00000560371 FOXD4L6Q3SYB3 417 aaPredicted RBP16.45■□□□□ 0.22
TRAF3-208ENST00000560371 HSP90AB4PQ58FF6 505 aa16.45■□□□□ 0.22
TRAF3-208ENST00000560371 FOXD4L3Q6VB84 417 aaPredicted RBP16.45■□□□□ 0.22
TRAF3-208ENST00000560371 ARID3AQ99856 593 aa16.45■□□□□ 0.22
TRAF3-208ENST00000560371 WWC1Q8IX03 1113 aa16.44■□□□□ 0.22
TRAF3-208ENST00000560371 IFT140Q96RY7 1462 aa16.44■□□□□ 0.22
TRAF3-208ENST00000560371 TPM3P06753 285 aa16.44■□□□□ 0.22
TRAF3-208ENST00000560371 CFAP70Q5T0N1 1121 aa16.44■□□□□ 0.22
TRAF3-208ENST00000560371 MTHFSP49914 203 aa16.44■□□□□ 0.22
TRAF3-208ENST00000560371 NEUROD6Q96NK8 337 aa16.44■□□□□ 0.22
TRAF3-208ENST00000560371 IPO9Q96P70 1041 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms