RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 SETD1BQ9UPS6 1966 aaKnown RBP17.33■□□□□ 0.37
HERC1-205ENST00000559886 NRXN1Q9ULB1 1477 aa17.33■□□□□ 0.36
HERC1-205ENST00000559886 PLPPR3Q6T4P5 718 aa17.32■□□□□ 0.36
HERC1-205ENST00000559886 MYO3AQ8NEV4 1616 aa17.32■□□□□ 0.36
HERC1-205ENST00000559886 PTPRMP28827 1452 aa17.31■□□□□ 0.36
HERC1-205ENST00000559886 KIAA1210Q9ULL0 1709 aa17.31■□□□□ 0.36
HERC1-205ENST00000559886 ZFYVE9O95405 1425 aa17.31■□□□□ 0.36
HERC1-205ENST00000559886 ADGRF5Q8IZF2 1346 aa17.31■□□□□ 0.36
HERC1-205ENST00000559886 VGFO15240 615 aaPredicted RBP17.29■□□□□ 0.36
HERC1-205ENST00000559886 ZNF316A6NFI3 1004 aaPredicted RBP17.28■□□□□ 0.36
HERC1-205ENST00000559886 PIK3C2GO75747 1445 aa17.28■□□□□ 0.36
HERC1-205ENST00000559886 LAMC1P11047 1609 aa17.27■□□□□ 0.36
HERC1-205ENST00000559886 ROCK2O75116 1388 aaKnown RBP17.27■□□□□ 0.35
HERC1-205ENST00000559886 GPRASP1Q5JY77 1395 aa17.27■□□□□ 0.35
HERC1-205ENST00000559886 RIMS2Q9UQ26 1411 aa17.26■□□□□ 0.35
HERC1-205ENST00000559886 NBPF1Q3BBV0 1214 aa17.26■□□□□ 0.35
HERC1-205ENST00000559886 CEP170BQ9Y4F5 1589 aaPredicted RBP17.26■□□□□ 0.35
HERC1-205ENST00000559886 ZNF142P52746 1687 aaPredicted RBP17.25■□□□□ 0.35
HERC1-205ENST00000559886 EIF4G2P78344 907 aaKnown RBP eCLIP17.25■□□□□ 0.354e-7■■■■■ 27
HERC1-205ENST00000559886 NUTM2DQ5VT03 806 aaPredicted RBP17.25■□□□□ 0.35
HERC1-205ENST00000559886 CARD11Q9BXL7 1154 aa17.24■□□□□ 0.35
HERC1-205ENST00000559886 TMEM2Q9UHN6 1383 aa17.24■□□□□ 0.35
HERC1-205ENST00000559886 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.23■□□□□ 0.35
HERC1-205ENST00000559886 KDM4FA0A1W2PPD8 638 aa17.22■□□□□ 0.35
HERC1-205ENST00000559886 CFAP70Q5T0N1 1121 aa17.22■□□□□ 0.35
HERC1-205ENST00000559886 SLIT1O75093 1534 aa17.22■□□□□ 0.35
HERC1-205ENST00000559886 HSPA5P11021 654 aaKnown RBP17.22■□□□□ 0.35
HERC1-205ENST00000559886 HDGFP51858 240 aaKnown RBP17.22■□□□□ 0.35
HERC1-205ENST00000559886 C14orf93Q9H972 538 aaKnown RBP17.22■□□□□ 0.35
HERC1-205ENST00000559886 THEMISQ8N1K5 641 aaPredicted RBP17.21■□□□□ 0.35
HERC1-205ENST00000559886 USP47Q96K76 1375 aa17.21■□□□□ 0.35
HERC1-205ENST00000559886 ARHGAP23Q9P227 1491 aa17.21■□□□□ 0.35
HERC1-205ENST00000559886 SETBP1Q9Y6X0 1596 aa17.21■□□□□ 0.35
HERC1-205ENST00000559886 IQGAP1P46940 1657 aa17.19■□□□□ 0.34
HERC1-205ENST00000559886 HIRIP3Q9BW71 556 aaPredicted RBP17.19■□□□□ 0.34
HERC1-205ENST00000559886 ADGRB1O14514 1584 aa17.17■□□□□ 0.34
HERC1-205ENST00000559886 NRXN3Q9Y4C0 1643 aa17.17■□□□□ 0.34
HERC1-205ENST00000559886 ALKQ9UM73 1620 aa17.16■□□□□ 0.34
HERC1-205ENST00000559886 SCAF11Q99590 1463 aaKnown RBP17.16■□□□□ 0.34
HERC1-205ENST00000559886 LTKP29376 864 aa17.15■□□□□ 0.34
HERC1-205ENST00000559886 SETD1AO15047 1707 aaKnown RBP17.15■□□□□ 0.34
HERC1-205ENST00000559886 TXNDC2Q86VQ3 553 aa17.14■□□□□ 0.34
HERC1-205ENST00000559886 EID1Q9Y6B2 187 aa17.14■□□□□ 0.34
HERC1-205ENST00000559886 PLEKHG1Q9ULL1 1385 aa17.13■□□□□ 0.33
HERC1-205ENST00000559886 ASXL1Q8IXJ9 1541 aa17.13■□□□□ 0.33
HERC1-205ENST00000559886 ST20-MTHFSA0A0A6YYL1 179 aa17.12■□□□□ 0.33
HERC1-205ENST00000559886 TMEM132EQ6IEE7 984 aa17.12■□□□□ 0.33
HERC1-205ENST00000559886 POLR1AO95602 1720 aaPredicted RBP17.12■□□□□ 0.33
HERC1-205ENST00000559886 SENP3Q9H4L4 574 aaPredicted RBP17.11■□□□□ 0.33
HERC1-205ENST00000559886 EIF3AQ14152 1382 aaKnown RBP17.09■□□□□ 0.33
HERC1-205ENST00000559886 ADAMTS13Q76LX8 1427 aa17.09■□□□□ 0.33
HERC1-205ENST00000559886 MED14O60244 1454 aa17.08■□□□□ 0.32
HERC1-205ENST00000559886 ARHGEF28Q8N1W1 1705 aaKnown RBP17.07■□□□□ 0.32
HERC1-205ENST00000559886 ANKLE2Q86XL3 938 aa17.07■□□□□ 0.32
HERC1-205ENST00000559886 YTHDC2Q9H6S0 1430 aaKnown RBP17.06■□□□□ 0.32
HERC1-205ENST00000559886 C11orf95C9JLR9 678 aaPredicted RBP17.06■□□□□ 0.32
HERC1-205ENST00000559886 BCANQ96GW7 911 aa17.06■□□□□ 0.32
HERC1-205ENST00000559886 TESK2Q96S53 571 aa17.06■□□□□ 0.32
HERC1-205ENST00000559886 TRAK1Q9UPV9 953 aa17.06■□□□□ 0.32
HERC1-205ENST00000559886 DIP2AQ14689 1571 aa17.05■□□□□ 0.32
HERC1-205ENST00000559886 METP08581 1390 aa17.05■□□□□ 0.32
HERC1-205ENST00000559886 WASHC2AQ641Q2 1341 aa17.05■□□□□ 0.32
HERC1-205ENST00000559886 CCDC7Q96M83 1385 aa17.03■□□□□ 0.32
HERC1-205ENST00000559886 TBX22Q9Y458 520 aa17.03■□□□□ 0.32
HERC1-205ENST00000559886 LRPPRCP42704 1394 aaKnown RBP17.03■□□□□ 0.32
HERC1-205ENST00000559886 QRICH2Q9H0J4 1663 aa17.02■□□□□ 0.32
HERC1-205ENST00000559886 STK26Q9P289 416 aa17.02■□□□□ 0.32
HERC1-205ENST00000559886 KNDC1Q76NI1 1749 aa17.02■□□□□ 0.32
HERC1-205ENST00000559886 KIF7Q2M1P5 1343 aa17.02■□□□□ 0.31
HERC1-205ENST00000559886 DLC1Q96QB1 1528 aa17.02■□□□□ 0.31
HERC1-205ENST00000559886 SLC26A8Q96RN1 970 aa17.02■□□□□ 0.31
HERC1-205ENST00000559886 ABCC11Q96J66 1382 aa17.02■□□□□ 0.31
HERC1-205ENST00000559886 LMTK3Q96Q04 1460 aa17.01■□□□□ 0.31
HERC1-205ENST00000559886 CENPJQ9HC77 1338 aaPredicted RBP17.01■□□□□ 0.31
HERC1-205ENST00000559886 SBNO2Q9Y2G9 1366 aa17.01■□□□□ 0.31
HERC1-205ENST00000559886 DIEXFQ68CQ4 756 aaKnown RBP17.01■□□□□ 0.31
HERC1-205ENST00000559886 SLC24A1O60721 1099 aa16.99■□□□□ 0.31
HERC1-205ENST00000559886 TECPR2O15040 1411 aa16.99■□□□□ 0.31
HERC1-205ENST00000559886 NPHP4O75161 1426 aaPredicted RBP16.99■□□□□ 0.31
HERC1-205ENST00000559886 TMF1P82094 1093 aa16.98■□□□□ 0.31
HERC1-205ENST00000559886 DISP3Q9P2K9 1392 aa16.98■□□□□ 0.31
HERC1-205ENST00000559886 DDX10Q13206 875 aaKnown RBP16.97■□□□□ 0.31
HERC1-205ENST00000559886 CPS1P31327 1500 aa16.97■□□□□ 0.31
HERC1-205ENST00000559886 NCKAP5LQ9HCH0 1330 aa16.97■□□□□ 0.31
HERC1-205ENST00000559886 PIK3R4Q99570 1358 aa16.97■□□□□ 0.31
HERC1-205ENST00000559886 PTPRUQ92729 1446 aa16.96■□□□□ 0.31
HERC1-205ENST00000559886 SIRT1Q96EB6 747 aa16.96■□□□□ 0.31
HERC1-205ENST00000559886 HSPA2P54652 639 aa16.95■□□□□ 0.3
HERC1-205ENST00000559886 PRAM1Q96QH2 718 aa16.95■□□□□ 0.3
HERC1-205ENST00000559886 CHD2O14647 1828 aaKnown RBP16.95■□□□□ 0.3
HERC1-205ENST00000559886 FAM135BQ49AJ0 1406 aa16.95■□□□□ 0.3
HERC1-205ENST00000559886 XRN1Q8IZH2 1706 aaKnown RBP16.94■□□□□ 0.3
HERC1-205ENST00000559886 POGKQ9P215 609 aa16.94■□□□□ 0.3
HERC1-205ENST00000559886 CDCA8Q53HL2 280 aa16.93■□□□□ 0.3
HERC1-205ENST00000559886 STRCQ7RTU9 1775 aa16.93■□□□□ 0.3
HERC1-205ENST00000559886 POLR3GLQ9BT43 218 aa16.92■□□□□ 0.3
HERC1-205ENST00000559886 AMOTL2Q9Y2J4 779 aa16.92■□□□□ 0.3
HERC1-205ENST00000559886 ROBO2Q9HCK4 1378 aa16.91■□□□□ 0.3
HERC1-205ENST00000559886 SAFB2Q14151 953 aaKnown RBP eCLIP16.91■□□□□ 0.3
HERC1-205ENST00000559886 WAPLQ7Z5K2 1190 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 128.3 ms