RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 PBX2P40425 430 aa11.08□□□□□ -0.64
LRRC28-209ENST00000558861 ONECUT3O60422 494 aaPredicted RBP11.07□□□□□ -0.64
LRRC28-209ENST00000558861 DNAJB2P25686 324 aa11.07□□□□□ -0.64
LRRC28-209ENST00000558861 BEGAINQ9BUH8 593 aa11.06□□□□□ -0.64
LRRC28-209ENST00000558861 SLC4A5Q9BY07 1137 aa11.05□□□□□ -0.64
LRRC28-209ENST00000558861 TMEM134Q9H6X4 195 aa11.05□□□□□ -0.64
LRRC28-209ENST00000558861 SEPT9Q9UHD8 586 aaPredicted RBP11.05□□□□□ -0.64
LRRC28-209ENST00000558861 RABGEF1Q9UJ41 708 aa11.05□□□□□ -0.64
LRRC28-209ENST00000558861 VPS9D1Q9Y2B5 631 aa11.04□□□□□ -0.64
LRRC28-209ENST00000558861 TIMELESSQ9UNS1 1208 aa11.02□□□□□ -0.65
LRRC28-209ENST00000558861 DDX11L8A8MPP1 907 aa11□□□□□ -0.65
LRRC28-209ENST00000558861 CC2D2AQ9P2K1 1620 aa10.99□□□□□ -0.65
LRRC28-209ENST00000558861 SMARCA4P51532 1647 aa10.98□□□□□ -0.65
LRRC28-209ENST00000558861 CD46P15529 392 aa10.98□□□□□ -0.65
LRRC28-209ENST00000558861 SH3D19Q5HYK7 790 aa10.98□□□□□ -0.65
LRRC28-209ENST00000558861 GOPCQ9HD26 462 aa10.98□□□□□ -0.65
LRRC28-209ENST00000558861 BAZ1AQ9NRL2 1556 aaPredicted RBP10.98□□□□□ -0.65
LRRC28-209ENST00000558861 LSM11P83369 360 aaKnown RBP eCLIP10.97□□□□□ -0.65
LRRC28-209ENST00000558861 FAM98CQ17RN3 349 aaKnown RBP10.97□□□□□ -0.65
LRRC28-209ENST00000558861 SWT1Q5T5J6 900 aaKnown RBP10.97□□□□□ -0.65
LRRC28-209ENST00000558861 SULF1Q8IWU6 871 aa10.97□□□□□ -0.65
LRRC28-209ENST00000558861 MROH2BQ7Z745 1585 aa10.97□□□□□ -0.65
LRRC28-209ENST00000558861 TK2O00142 265 aa10.95□□□□□ -0.66
LRRC28-209ENST00000558861 NBPF3Q9H094 633 aa10.95□□□□□ -0.66
LRRC28-209ENST00000558861 BHMG1C9JSJ3 638 aaPredicted RBP10.94□□□□□ -0.66
LRRC28-209ENST00000558861 MYSM1Q5VVJ2 828 aa10.94□□□□□ -0.66
LRRC28-209ENST00000558861 ADGRD1Q6QNK2 874 aa10.94□□□□□ -0.66
LRRC28-209ENST00000558861 RDH13Q8NBN7 331 aa10.94□□□□□ -0.66
LRRC28-209ENST00000558861 TBC1D2Q9BYX2 928 aa10.94□□□□□ -0.66
LRRC28-209ENST00000558861 RSPH6AQ9H0K4 717 aa10.94□□□□□ -0.66
LRRC28-209ENST00000558861 POLR3EQ9NVU0 708 aa10.94□□□□□ -0.66
LRRC28-209ENST00000558861 PCMTD1Q96MG8 357 aaPredicted RBP10.93□□□□□ -0.66
LRRC28-209ENST00000558861 PEG3Q9GZU2 1588 aa10.93□□□□□ -0.66
LRRC28-209ENST00000558861 ATAD2BQ9ULI0 1458 aa10.93□□□□□ -0.66
LRRC28-209ENST00000558861 SKIV2LQ15477 1246 aaKnown RBP10.92□□□□□ -0.66
LRRC28-209ENST00000558861 SAMD7Q7Z3H4 446 aa10.92□□□□□ -0.66
LRRC28-209ENST00000558861 LAPTM4BQ86VI4 370 aa10.92□□□□□ -0.66
LRRC28-209ENST00000558861 NCAPD3P42695 1498 aa10.92□□□□□ -0.66
LRRC28-209ENST00000558861 SLC10A3P09131 477 aa10.91□□□□□ -0.66
LRRC28-209ENST00000558861 PROCA1Q8NCQ7 364 aaPredicted RBP10.91□□□□□ -0.66
LRRC28-209ENST00000558861 SPIRE2Q8WWL2 714 aa10.91□□□□□ -0.66
LRRC28-209ENST00000558861 RSF1Q96T23 1441 aaPredicted RBP10.91□□□□□ -0.66
LRRC28-209ENST00000558861 ANKRD13DQ6ZTN6 518 aa10.9□□□□□ -0.66
LRRC28-209ENST00000558861 C14orf37Q86TY3 774 aa10.9□□□□□ -0.66
LRRC28-209ENST00000558861 HRO43593 1189 aa10.89□□□□□ -0.67
LRRC28-209ENST00000558861 CLK2P49760 499 aaKnown RBP10.89□□□□□ -0.67
LRRC28-209ENST00000558861 NUTM1Q86Y26 1132 aa10.89□□□□□ -0.67
LRRC28-209ENST00000558861 MRPL50Q8N5N7 158 aaKnown RBP10.89□□□□□ -0.67
LRRC28-209ENST00000558861 ZFRQ96KR1 1074 aaKnown RBP10.89□□□□□ -0.67
LRRC28-209ENST00000558861 RNF40O75150 1001 aa10.88□□□□□ -0.67
LRRC28-209ENST00000558861 PLSCR2Q9NRY7 297 aa10.88□□□□□ -0.67
LRRC28-209ENST00000558861 LIMD1Q9UGP4 676 aa10.88□□□□□ -0.67
LRRC28-209ENST00000558861 ATP1B4Q9UN42 357 aaPredicted RBP10.88□□□□□ -0.67
LRRC28-209ENST00000558861 HDGFP51858 240 aaKnown RBP10.87□□□□□ -0.67
LRRC28-209ENST00000558861 DIXDC1Q155Q3 683 aa10.87□□□□□ -0.67
LRRC28-209ENST00000558861 SMARCA2P51531 1590 aa10.86□□□□□ -0.67
LRRC28-209ENST00000558861 GCGRP47871 477 aa10.86□□□□□ -0.67
LRRC28-209ENST00000558861 MOXD2PA6NHM9 499 aa10.85□□□□□ -0.67
LRRC28-209ENST00000558861 KDM4AO75164 1064 aa10.85□□□□□ -0.67
LRRC28-209ENST00000558861 RSPH4AQ5TD94 716 aa10.85□□□□□ -0.67
LRRC28-209ENST00000558861 SLF2Q8IX21 1173 aa10.85□□□□□ -0.67
LRRC28-209ENST00000558861 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.85□□□□□ -0.67
LRRC28-209ENST00000558861 HMGXB3Q12766 1538 aa10.84□□□□□ -0.67
LRRC28-209ENST00000558861 NDUFV2P19404 249 aa10.84□□□□□ -0.67
LRRC28-209ENST00000558861 RSBN1LQ6PCB5 846 aaPredicted RBP10.84□□□□□ -0.67
LRRC28-209ENST00000558861 RIC3Q7Z5B4 369 aa10.84□□□□□ -0.67
LRRC28-209ENST00000558861 KRTAP3-3Q9BYR6 98 aa10.84□□□□□ -0.67
LRRC28-209ENST00000558861 KRTAP3-2Q9BYR7 98 aa10.84□□□□□ -0.67
LRRC28-209ENST00000558861 CFHP08603 1231 aa10.83□□□□□ -0.68
LRRC28-209ENST00000558861 SLC4A3P48751 1232 aa10.83□□□□□ -0.68
LRRC28-209ENST00000558861 ERICH6Q7L0X2 663 aa10.83□□□□□ -0.68
LRRC28-209ENST00000558861 SPTLC1O15269 473 aa10.82□□□□□ -0.68
LRRC28-209ENST00000558861 FBXO31Q5XUX0 539 aaPredicted RBP10.82□□□□□ -0.68
LRRC28-209ENST00000558861 LRCH3Q96II8 777 aa10.82□□□□□ -0.68
LRRC28-209ENST00000558861 HOXA2O43364 376 aa10.81□□□□□ -0.68
LRRC28-209ENST00000558861 CSPP1Q1MSJ5 1256 aa10.81□□□□□ -0.68
LRRC28-209ENST00000558861 HLA-CQ95604 372 aa10.81□□□□□ -0.68
LRRC28-209ENST00000558861 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.81□□□□□ -0.68
LRRC28-209ENST00000558861 WIZO95785 1651 aa10.8□□□□□ -0.68
LRRC28-209ENST00000558861 STAC3Q96MF2 364 aa10.8□□□□□ -0.68
LRRC28-209ENST00000558861 USP46P62068 366 aa10.79□□□□□ -0.68
LRRC28-209ENST00000558861 GUCA2AQ02747 115 aa10.79□□□□□ -0.68
LRRC28-209ENST00000558861 ANKK1Q8NFD2 765 aa10.79□□□□□ -0.68
LRRC28-209ENST00000558861 PCDHB15Q9Y5E8 787 aa10.79□□□□□ -0.68
LRRC28-209ENST00000558861 BAZ1BQ9UIG0 1483 aaKnown RBP10.79□□□□□ -0.68
LRRC28-209ENST00000558861 POTEMA6NI47 508 aa10.78□□□□□ -0.68
LRRC28-209ENST00000558861 GOLGA8CPA6NN73 597 aa10.78□□□□□ -0.68
LRRC28-209ENST00000558861 BCAMP50895 628 aa10.78□□□□□ -0.68
LRRC28-209ENST00000558861 FUT2Q10981 343 aa10.78□□□□□ -0.68
LRRC28-209ENST00000558861 QPCTQ16769 361 aa10.78□□□□□ -0.68
LRRC28-209ENST00000558861 GJA5P36382 358 aa10.76□□□□□ -0.69
LRRC28-209ENST00000558861 TUSC1Q2TAM9 212 aa10.76□□□□□ -0.69
LRRC28-209ENST00000558861 POTEGQ6S5H5 508 aa10.76□□□□□ -0.69
LRRC28-209ENST00000558861 SOWAHBA6NEL2 793 aa10.75□□□□□ -0.69
LRRC28-209ENST00000558861 FDX1P10109 184 aa10.75□□□□□ -0.69
LRRC28-209ENST00000558861 RFC5P40937 340 aa10.75□□□□□ -0.69
LRRC28-209ENST00000558861 CABLES1Q8TDN4 633 aa10.75□□□□□ -0.69
LRRC28-209ENST00000558861 WNT2BQ93097 391 aa10.75□□□□□ -0.69
LRRC28-209ENST00000558861 PCDHGC3Q9UN70 934 aa10.75□□□□□ -0.69
LRRC28-209ENST00000558861 PPP2R2DQ66LE6 453 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms