RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CHGAP10645 457 aaKnown RBP12.87□□□□□ -0.35
USP3-208ENST00000558285 UBR1Q8IWV7 1749 aa12.86□□□□□ -0.35
USP3-208ENST00000558285 ADGRB3O60242 1522 aa12.86□□□□□ -0.35
USP3-208ENST00000558285 CPS1P31327 1500 aa12.86□□□□□ -0.35
USP3-208ENST00000558285 ILDR1Q86SU0 546 aaPredicted RBP12.85□□□□□ -0.35
USP3-208ENST00000558285 CFAP65Q6ZU64 1925 aaKnown RBP12.85□□□□□ -0.35
USP3-208ENST00000558285 ARHGAP23Q9P227 1491 aa12.85□□□□□ -0.35
USP3-208ENST00000558285 PIK3C2BO00750 1634 aa12.85□□□□□ -0.35
USP3-208ENST00000558285 IQGAP1P46940 1657 aa12.83□□□□□ -0.36
USP3-208ENST00000558285 SYNMO15061 1565 aa12.83□□□□□ -0.36
USP3-208ENST00000558285 ZNF335Q9H4Z2 1342 aaPredicted RBP12.82□□□□□ -0.36
USP3-208ENST00000558285 NEURL4Q96JN8 1562 aa12.82□□□□□ -0.36
USP3-208ENST00000558285 E9PCH4 1651 aa12.81□□□□□ -0.36
USP3-208ENST00000558285 SETD5Q9C0A6 1442 aa12.8□□□□□ -0.36
USP3-208ENST00000558285 ZNF326Q5BKZ1 582 aaKnown RBP12.8□□□□□ -0.36
USP3-208ENST00000558285 LTBP4Q8N2S1 1624 aa12.8□□□□□ -0.36
USP3-208ENST00000558285 TOM1O60784 492 aa12.79□□□□□ -0.36
USP3-208ENST00000558285 RIMS2Q9UQ26 1411 aa12.79□□□□□ -0.36
USP3-208ENST00000558285 LTKP29376 864 aa12.79□□□□□ -0.36
USP3-208ENST00000558285 PLEKHG1Q9ULL1 1385 aa12.78□□□□□ -0.36
USP3-208ENST00000558285 SPHKAPQ2M3C7 1700 aa12.77□□□□□ -0.37
USP3-208ENST00000558285 TRPM2O94759 1503 aa12.77□□□□□ -0.37
USP3-208ENST00000558285 UBAP1LF5GYI3 381 aa12.76□□□□□ -0.37
USP3-208ENST00000558285 RPGRIP1LQ68CZ1 1315 aa12.76□□□□□ -0.37
USP3-208ENST00000558285 HRCP23327 699 aa12.76□□□□□ -0.37
USP3-208ENST00000558285 TMEM131LA2VDJ0 1609 aa12.75□□□□□ -0.37
USP3-208ENST00000558285 CCDC144AA2RUR9 1427 aa12.75□□□□□ -0.37
USP3-208ENST00000558285 KCNA6P17658 529 aa12.75□□□□□ -0.37
USP3-208ENST00000558285 MYT1Q01538 1121 aa12.75□□□□□ -0.37
USP3-208ENST00000558285 MPHOSPH9Q99550 1183 aa12.75□□□□□ -0.37
USP3-208ENST00000558285 VGFO15240 615 aaPredicted RBP12.74□□□□□ -0.37
USP3-208ENST00000558285 TBX22Q9Y458 520 aa12.74□□□□□ -0.37
USP3-208ENST00000558285 ZFYVE9O95405 1425 aa12.74□□□□□ -0.37
USP3-208ENST00000558285 PIK3R4Q99570 1358 aa12.73□□□□□ -0.37
USP3-208ENST00000558285 DIP2AQ14689 1571 aa12.73□□□□□ -0.37
USP3-208ENST00000558285 SLC26A8Q96RN1 970 aa12.72□□□□□ -0.37
USP3-208ENST00000558285 NKTRP30414 1462 aaKnown RBP12.71□□□□□ -0.37
USP3-208ENST00000558285 RNF216Q9NWF9 866 aaPredicted RBP12.71□□□□□ -0.37
USP3-208ENST00000558285 RAB3GAP2Q9H2M9 1393 aa12.71□□□□□ -0.38
USP3-208ENST00000558285 PROSER2Q86WR7 435 aaPredicted RBP12.71□□□□□ -0.38
USP3-208ENST00000558285 KIF1BO60333 1816 aa12.7□□□□□ -0.38
USP3-208ENST00000558285 C14orf37Q86TY3 774 aa12.69□□□□□ -0.38
USP3-208ENST00000558285 LRRC7Q96NW7 1537 aa12.67□□□□□ -0.38
USP3-208ENST00000558285 MSH6P52701 1360 aa12.67□□□□□ -0.38
USP3-208ENST00000558285 ANKRD30BQ9BXX2 1392 aa12.67□□□□□ -0.38
USP3-208ENST00000558285 CLTCL1P53675 1640 aa12.67□□□□□ -0.38
USP3-208ENST00000558285 NCOA3Q9Y6Q9 1424 aa12.67□□□□□ -0.38
USP3-208ENST00000558285 NUTM2DQ5VT03 806 aaPredicted RBP12.66□□□□□ -0.38
USP3-208ENST00000558285 PIP4K2BP78356 416 aa12.65□□□□□ -0.38
USP3-208ENST00000558285 TMEM94Q12767 1356 aa12.65□□□□□ -0.38
USP3-208ENST00000558285 STAC3Q96MF2 364 aa12.65□□□□□ -0.38
USP3-208ENST00000558285 MYO5BQ9ULV0 1848 aa12.65□□□□□ -0.39
USP3-208ENST00000558285 NWD1Q149M9 1564 aa12.64□□□□□ -0.39
USP3-208ENST00000558285 SETBP1Q9Y6X0 1596 aa12.64□□□□□ -0.39
USP3-208ENST00000558285 ADAMTS13Q76LX8 1427 aa12.62□□□□□ -0.39
USP3-208ENST00000558285 ATF3P18847 181 aa12.62□□□□□ -0.39
USP3-208ENST00000558285 AMOTL2Q9Y2J4 779 aa12.62□□□□□ -0.39
USP3-208ENST00000558285 NEXMIFQ5QGS0 1516 aa12.62□□□□□ -0.39
USP3-208ENST00000558285 RGL3Q3MIN7 710 aa12.62□□□□□ -0.39
USP3-208ENST00000558285 CADPS2Q86UW7 1296 aa12.62□□□□□ -0.39
USP3-208ENST00000558285 C19orf44Q9H6X5 657 aa12.6□□□□□ -0.39
USP3-208ENST00000558285 CHD2O14647 1828 aaKnown RBP12.58□□□□□ -0.39
USP3-208ENST00000558285 SPATA31E1Q6ZUB1 1445 aa12.58□□□□□ -0.4
USP3-208ENST00000558285 STRCP1A6NGW2 1772 aa12.57□□□□□ -0.4
USP3-208ENST00000558285 DCCP43146 1447 aa12.57□□□□□ -0.4
USP3-208ENST00000558285 FAM135BQ49AJ0 1406 aa12.57□□□□□ -0.4
USP3-208ENST00000558285 TRIM26Q12899 539 aaPredicted RBP12.56□□□□□ -0.4
USP3-208ENST00000558285 SLAIN2Q9P270 581 aa12.56□□□□□ -0.4
USP3-208ENST00000558285 CNKSR2Q8WXI2 1034 aa12.55□□□□□ -0.4
USP3-208ENST00000558285 PTCH1Q13635 1447 aa12.55□□□□□ -0.4
USP3-208ENST00000558285 METP08581 1390 aa12.54□□□□□ -0.4
USP3-208ENST00000558285 PPLO60437 1756 aa12.54□□□□□ -0.4
USP3-208ENST00000558285 HSPA1LP34931 641 aa12.54□□□□□ -0.4
USP3-208ENST00000558285 PPP4R3CPQ6ZMV5 832 aa12.54□□□□□ -0.4
USP3-208ENST00000558285 MYOM2P54296 1465 aa12.54□□□□□ -0.4
USP3-208ENST00000558285 ALKQ9UM73 1620 aa12.53□□□□□ -0.4
USP3-208ENST00000558285 DHX57Q6P158 1386 aaKnown RBP12.53□□□□□ -0.4
USP3-208ENST00000558285 AMER1Q5JTC6 1135 aaPredicted RBP12.53□□□□□ -0.4
USP3-208ENST00000558285 RTN4Q9NQC3 1192 aaKnown RBP12.53□□□□□ -0.4
USP3-208ENST00000558285 NRXN3Q9Y4C0 1643 aa12.53□□□□□ -0.4
USP3-208ENST00000558285 PRAG1Q86YV5 1406 aa12.52□□□□□ -0.41
USP3-208ENST00000558285 XRN1Q8IZH2 1706 aaKnown RBP12.52□□□□□ -0.41
USP3-208ENST00000558285 NCBP3Q53F19 620 aaKnown RBP12.51□□□□□ -0.41
USP3-208ENST00000558285 PIK3C2GO75747 1445 aa12.51□□□□□ -0.41
USP3-208ENST00000558285 ADGRL3Q9HAR2 1447 aa12.51□□□□□ -0.41
USP3-208ENST00000558285 ADGRF5Q8IZF2 1346 aa12.51□□□□□ -0.41
USP3-208ENST00000558285 LAMC1P11047 1609 aa12.51□□□□□ -0.41
USP3-208ENST00000558285 RBM33Q96EV2 1170 aaKnown RBP12.51□□□□□ -0.41
USP3-208ENST00000558285 LRPPRCP42704 1394 aaKnown RBP12.5□□□□□ -0.41
USP3-208ENST00000558285 PTPRUQ92729 1446 aa12.5□□□□□ -0.41
USP3-208ENST00000558285 DCAF11Q8TEB1 546 aa12.5□□□□□ -0.41
USP3-208ENST00000558285 C14orf93Q9H972 538 aaKnown RBP12.5□□□□□ -0.41
USP3-208ENST00000558285 DISP3Q9P2K9 1392 aa12.49□□□□□ -0.41
USP3-208ENST00000558285 SIRT1Q96EB6 747 aa12.49□□□□□ -0.41
USP3-208ENST00000558285 ABCC11Q96J66 1382 aa12.49□□□□□ -0.41
USP3-208ENST00000558285 STK26Q9P289 416 aa12.48□□□□□ -0.41
USP3-208ENST00000558285 XIRP1Q702N8 1843 aaKnown RBP12.48□□□□□ -0.41
USP3-208ENST00000558285 IFT172Q9UG01 1749 aa12.47□□□□□ -0.41
USP3-208ENST00000558285 KDM2AQ9Y2K7 1162 aa12.47□□□□□ -0.41
USP3-208ENST00000558285 TECPR2O15040 1411 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms