RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 RTN4Q9NQC3 1192 aaKnown RBP14.56□□□□□ -0.08
USP3-206ENST00000558157 CNTLNQ9NXG0 1405 aa14.56□□□□□ -0.08
USP3-206ENST00000558157 MLECQ14165 292 aa14.55□□□□□ -0.08
USP3-206ENST00000558157 ARHGAP31Q2M1Z3 1444 aa14.54□□□□□ -0.08
USP3-206ENST00000558157 NEFMP07197 916 aa14.54□□□□□ -0.08
USP3-206ENST00000558157 ARID4BQ4LE39 1312 aaPredicted RBP14.53□□□□□ -0.08
USP3-206ENST00000558157 PREX1Q8TCU6 1659 aa14.53□□□□□ -0.08
USP3-206ENST00000558157 SYNMO15061 1565 aa14.52□□□□□ -0.08
USP3-206ENST00000558157 RSPH6AQ9H0K4 717 aa14.52□□□□□ -0.08
USP3-206ENST00000558157 NOS1P29475 1434 aa14.51□□□□□ -0.09
USP3-206ENST00000558157 MROH2AA6NES4 1674 aa14.51□□□□□ -0.09
USP3-206ENST00000558157 KIF1BO60333 1816 aa14.51□□□□□ -0.09
USP3-206ENST00000558157 SPATA31E1Q6ZUB1 1445 aa14.51□□□□□ -0.09
USP3-206ENST00000558157 PPP6R1Q9UPN7 881 aa14.51□□□□□ -0.09
USP3-206ENST00000558157 PIK3C2BO00750 1634 aa14.49□□□□□ -0.09
USP3-206ENST00000558157 PRKRIP1Q9H875 184 aaPredicted RBP14.49□□□□□ -0.09
USP3-206ENST00000558157 TCERG1O14776 1098 aaKnown RBP14.49□□□□□ -0.09
USP3-206ENST00000558157 RGL3Q3MIN7 710 aa14.49□□□□□ -0.09
USP3-206ENST00000558157 ERVK-7P63135 1459 aa14.48□□□□□ -0.09
USP3-206ENST00000558157 NBPF8Q3BBV2 869 aa14.48□□□□□ -0.09
USP3-206ENST00000558157 NEURL4Q96JN8 1562 aa14.48□□□□□ -0.09
USP3-206ENST00000558157 ADGRB3O60242 1522 aa14.47□□□□□ -0.09
USP3-206ENST00000558157 GSE1Q14687 1217 aa14.47□□□□□ -0.09
USP3-206ENST00000558157 NUDCQ9Y266 331 aa14.47□□□□□ -0.09
USP3-206ENST00000558157 UHRF1BP1Q6BDS2 1440 aa14.47□□□□□ -0.09
USP3-206ENST00000558157 FER1L4A9Z1Z3 1794 aa14.46□□□□□ -0.09
USP3-206ENST00000558157 DCAF11Q8TEB1 546 aa14.46□□□□□ -0.09
USP3-206ENST00000558157 MRS2Q9HD23 443 aa14.46□□□□□ -0.09
USP3-206ENST00000558157 MS4A1P11836 297 aa14.45□□□□□ -0.1
USP3-206ENST00000558157 ZNF326Q5BKZ1 582 aaKnown RBP14.45□□□□□ -0.1
USP3-206ENST00000558157 SPATA31D1Q6ZQQ2 1576 aa14.45□□□□□ -0.1
USP3-206ENST00000558157 ESF1Q9H501 851 aaKnown RBP14.45□□□□□ -0.1
USP3-206ENST00000558157 KDM2AQ9Y2K7 1162 aa14.45□□□□□ -0.1
USP3-206ENST00000558157 IFT172Q9UG01 1749 aa14.44□□□□□ -0.1
USP3-206ENST00000558157 FBXO31Q5XUX0 539 aaPredicted RBP14.44□□□□□ -0.1
USP3-206ENST00000558157 FAM9BQ8IZU0 186 aa14.43□□□□□ -0.1
USP3-206ENST00000558157 DDRGK1Q96HY6 314 aa14.43□□□□□ -0.1
USP3-206ENST00000558157 PRAG1Q86YV5 1406 aa14.43□□□□□ -0.1
USP3-206ENST00000558157 EIF4G2P78344 907 aaKnown RBP eCLIP14.43□□□□□ -0.1
USP3-206ENST00000558157 ZMYM3Q14202 1370 aa14.43□□□□□ -0.1
USP3-206ENST00000558157 EIF5BO60841 1220 aaKnown RBP14.42□□□□□ -0.1
USP3-206ENST00000558157 HSPA5P11021 654 aaKnown RBP14.42□□□□□ -0.1
USP3-206ENST00000558157 RALGAPBQ86X10 1494 aa14.42□□□□□ -0.1
USP3-206ENST00000558157 TRPM1Q7Z4N2 1603 aa14.42□□□□□ -0.1
USP3-206ENST00000558157 MADDQ8WXG6 1647 aa14.42□□□□□ -0.1
USP3-206ENST00000558157 GLIPR1L2Q4G1C9 344 aa14.42□□□□□ -0.1
USP3-206ENST00000558157 CCDC184Q52MB2 194 aa14.42□□□□□ -0.1
USP3-206ENST00000558157 FAM43AQ8N2R8 423 aa14.42□□□□□ -0.1
USP3-206ENST00000558157 PKNOX2Q96KN3 472 aa14.42□□□□□ -0.1
USP3-206ENST00000558157 MYO5BQ9ULV0 1848 aa14.41□□□□□ -0.1
USP3-206ENST00000558157 CHGAP10645 457 aaKnown RBP14.41□□□□□ -0.1
USP3-206ENST00000558157 C3P01024 1663 aa14.4□□□□□ -0.1
USP3-206ENST00000558157 BRPF3Q9ULD4 1205 aa14.4□□□□□ -0.1
USP3-206ENST00000558157 PPLO60437 1756 aa14.4□□□□□ -0.1
USP3-206ENST00000558157 TMEM131LA2VDJ0 1609 aa14.39□□□□□ -0.11
USP3-206ENST00000558157 CCDC7Q96M83 1385 aa14.39□□□□□ -0.11
USP3-206ENST00000558157 LAS1LQ9Y4W2 734 aaKnown RBP14.39□□□□□ -0.11
USP3-206ENST00000558157 IDI1Q13907 227 aa14.39□□□□□ -0.11
USP3-206ENST00000558157 BACH2Q9BYV9 841 aa14.39□□□□□ -0.11
USP3-206ENST00000558157 MYOM2P54296 1465 aa14.38□□□□□ -0.11
USP3-206ENST00000558157 SLC52A1Q9NWF4 448 aa14.38□□□□□ -0.11
USP3-206ENST00000558157 RIMS1Q86UR5 1692 aaKnown RBP14.38□□□□□ -0.11
USP3-206ENST00000558157 PDE4AP27815 886 aa14.37□□□□□ -0.11
USP3-206ENST00000558157 ADAMTSL3P82987 1691 aa14.36□□□□□ -0.11
USP3-206ENST00000558157 NEXMIFQ5QGS0 1516 aa14.36□□□□□ -0.11
USP3-206ENST00000558157 TNRQ92752 1358 aa14.35□□□□□ -0.11
USP3-206ENST00000558157 POLR1AO95602 1720 aaPredicted RBP14.35□□□□□ -0.11
USP3-206ENST00000558157 NRXN1Q9ULB1 1477 aa14.34□□□□□ -0.11
USP3-206ENST00000558157 ROCK2O75116 1388 aaKnown RBP14.34□□□□□ -0.11
USP3-206ENST00000558157 LAMC1P11047 1609 aa14.34□□□□□ -0.11
USP3-206ENST00000558157 CEBPAP49715 358 aaPredicted RBP14.33□□□□□ -0.12
USP3-206ENST00000558157 NPM2Q86SE8 214 aaKnown RBP14.33□□□□□ -0.12
USP3-206ENST00000558157 STAC3Q96MF2 364 aa14.33□□□□□ -0.12
USP3-206ENST00000558157 KIAA1210Q9ULL0 1709 aa14.32□□□□□ -0.12
USP3-206ENST00000558157 ADGRF5Q8IZF2 1346 aa14.32□□□□□ -0.12
USP3-206ENST00000558157 RPGRIP1LQ68CZ1 1315 aa14.32□□□□□ -0.12
USP3-206ENST00000558157 NFKBIBQ15653 356 aa14.32□□□□□ -0.12
USP3-206ENST00000558157 A2ML1A8K2U0 1454 aa14.32□□□□□ -0.12
USP3-206ENST00000558157 USP47Q96K76 1375 aa14.31□□□□□ -0.12
USP3-206ENST00000558157 NBPF1Q3BBV0 1214 aa14.31□□□□□ -0.12
USP3-206ENST00000558157 PLPPR3Q6T4P5 718 aa14.31□□□□□ -0.12
USP3-206ENST00000558157 CARD11Q9BXL7 1154 aa14.31□□□□□ -0.12
USP3-206ENST00000558157 GPRASP1Q5JY77 1395 aa14.31□□□□□ -0.12
USP3-206ENST00000558157 UBR1Q8IWV7 1749 aa14.3□□□□□ -0.12
USP3-206ENST00000558157 PIK3C2GO75747 1445 aa14.3□□□□□ -0.12
USP3-206ENST00000558157 FRAT1Q92837 279 aaPredicted RBP14.3□□□□□ -0.12
USP3-206ENST00000558157 STAG3Q9UJ98 1225 aa14.3□□□□□ -0.12
USP3-206ENST00000558157 KDM5AP29375 1690 aaKnown RBP14.29□□□□□ -0.12
USP3-206ENST00000558157 MYO3AQ8NEV4 1616 aa14.29□□□□□ -0.12
USP3-206ENST00000558157 NUTM2DQ5VT03 806 aaPredicted RBP14.29□□□□□ -0.12
USP3-206ENST00000558157 NLRP1Q9C000 1473 aa14.28□□□□□ -0.12
USP3-206ENST00000558157 IQGAP1P46940 1657 aa14.28□□□□□ -0.12
USP3-206ENST00000558157 RRP1P56182 461 aaKnown RBP14.26□□□□□ -0.13
USP3-206ENST00000558157 ZFYVE9O95405 1425 aa14.26□□□□□ -0.13
USP3-206ENST00000558157 RIMS2Q9UQ26 1411 aa14.26□□□□□ -0.13
USP3-206ENST00000558157 CFAP70Q5T0N1 1121 aa14.25□□□□□ -0.13
USP3-206ENST00000558157 VGFO15240 615 aaPredicted RBP14.24□□□□□ -0.13
USP3-206ENST00000558157 SETBP1Q9Y6X0 1596 aa14.24□□□□□ -0.13
USP3-206ENST00000558157 DAXXQ9UER7 740 aaPredicted RBP14.23□□□□□ -0.13
USP3-206ENST00000558157 KIF7Q2M1P5 1343 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms