RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 NGEFQ8N5V2 710 aa21.29■■□□□ 1
SHMT2-231ENST00000557433 DUSP27Q5VZP5 1158 aa21.29■■□□□ 1
SHMT2-231ENST00000557433 SCAF11Q99590 1463 aaKnown RBP21.29■■□□□ 1
SHMT2-231ENST00000557433 ASXL1Q8IXJ9 1541 aa21.29■■□□□ 1
SHMT2-231ENST00000557433 GOLGA2Q08379 1002 aa21.28■■□□□ 1
SHMT2-231ENST00000557433 SHROOM2Q13796 1616 aa21.27■■□□□ 1
SHMT2-231ENST00000557433 TRPM2O94759 1503 aa21.27■■□□□ 1
SHMT2-231ENST00000557433 ABCC2Q92887 1545 aa21.26■□□□□ 0.99
SHMT2-231ENST00000557433 AMER1Q5JTC6 1135 aaPredicted RBP21.26■□□□□ 0.99
SHMT2-231ENST00000557433 SPHKAPQ2M3C7 1700 aa21.26■□□□□ 0.99
SHMT2-231ENST00000557433 NEURL4Q96JN8 1562 aa21.25■□□□□ 0.99
SHMT2-231ENST00000557433 PLEKHH1Q9ULM0 1364 aa21.25■□□□□ 0.99
SHMT2-231ENST00000557433 FAM161AQ3B820 660 aa21.25■□□□□ 0.99
SHMT2-231ENST00000557433 PLCH2O75038 1416 aa21.25■□□□□ 0.99
SHMT2-231ENST00000557433 LAS1LQ9Y4W2 734 aaKnown RBP21.24■□□□□ 0.99
SHMT2-231ENST00000557433 KIAA1210Q9ULL0 1709 aa21.24■□□□□ 0.99
SHMT2-231ENST00000557433 PTPRTO14522 1441 aa21.23■□□□□ 0.99
SHMT2-231ENST00000557433 CEP152O94986 1710 aa21.23■□□□□ 0.99
SHMT2-231ENST00000557433 RTEL1-TNFRSF6BF6WH68 1400 aa21.22■□□□□ 0.99
SHMT2-231ENST00000557433 TRMT2AQ8IZ69 625 aaKnown RBP21.22■□□□□ 0.99
SHMT2-231ENST00000557433 SLFN5Q08AF3 891 aa21.21■□□□□ 0.99
SHMT2-231ENST00000557433 ABCC1P33527 1531 aa21.21■□□□□ 0.99
SHMT2-231ENST00000557433 DAXXQ9UER7 740 aaPredicted RBP21.21■□□□□ 0.99
SHMT2-231ENST00000557433 EFCAB2Q5VUJ9 269 aa21.2■□□□□ 0.98
SHMT2-231ENST00000557433 C20orf194Q5TEA3 1177 aa21.19■□□□□ 0.98
SHMT2-231ENST00000557433 NINLQ9Y2I6 1382 aa21.19■□□□□ 0.98
SHMT2-231ENST00000557433 NKTRP30414 1462 aaKnown RBP21.18■□□□□ 0.98
SHMT2-231ENST00000557433 ARAP3Q8WWN8 1544 aa21.18■□□□□ 0.98
SHMT2-231ENST00000557433 MYOM1P52179 1685 aa21.17■□□□□ 0.98
SHMT2-231ENST00000557433 KDM5AP29375 1690 aaKnown RBP21.16■□□□□ 0.98
SHMT2-231ENST00000557433 DEPDC5O75140 1603 aa21.16■□□□□ 0.98
SHMT2-231ENST00000557433 E9PSI1 815 aa21.15■□□□□ 0.98
SHMT2-231ENST00000557433 C8orf34Q49A92 452 aa21.15■□□□□ 0.98
SHMT2-231ENST00000557433 TET3O43151 1660 aa21.14■□□□□ 0.97
SHMT2-231ENST00000557433 UHRF1BP1LA0JNW5 1464 aa21.13■□□□□ 0.97
SHMT2-231ENST00000557433 GSE1Q14687 1217 aa21.12■□□□□ 0.97
SHMT2-231ENST00000557433 CLTCL1P53675 1640 aa21.11■□□□□ 0.97
SHMT2-231ENST00000557433 NFKBIBQ15653 356 aa21.11■□□□□ 0.97
SHMT2-231ENST00000557433 CHD1O14646 1710 aa21.1■□□□□ 0.97
SHMT2-231ENST00000557433 MYOM2P54296 1465 aa21.1■□□□□ 0.97
SHMT2-231ENST00000557433 CGNL1Q0VF96 1302 aa21.1■□□□□ 0.97
SHMT2-231ENST00000557433 AAMPQ13685 434 aa21.1■□□□□ 0.97
SHMT2-231ENST00000557433 PDE3AQ14432 1141 aa21.1■□□□□ 0.97
SHMT2-231ENST00000557433 VWDEQ8N2E2 1590 aa21.09■□□□□ 0.97
SHMT2-231ENST00000557433 ZFYVE16Q7Z3T8 1539 aa21.09■□□□□ 0.97
SHMT2-231ENST00000557433 TRAPPC8Q9Y2L5 1435 aa21.09■□□□□ 0.97
SHMT2-231ENST00000557433 KANK1Q14678 1352 aa21.08■□□□□ 0.97
SHMT2-231ENST00000557433 SPAG9O60271 1321 aaKnown RBP21.08■□□□□ 0.96
SHMT2-231ENST00000557433 SBNO2Q9Y2G9 1366 aa21.06■□□□□ 0.96
SHMT2-231ENST00000557433 MAPK8IP3Q9UPT6 1336 aa21.06■□□□□ 0.96
SHMT2-231ENST00000557433 ZCCHC11Q5TAX3 1644 aaKnown RBP21.06■□□□□ 0.96
SHMT2-231ENST00000557433 SKAP1Q86WV1 359 aa21.06■□□□□ 0.96
SHMT2-231ENST00000557433 ZMYM3Q14202 1370 aa21.05■□□□□ 0.96
SHMT2-231ENST00000557433 VIRMAQ69YN4 1812 aaKnown RBP21.05■□□□□ 0.96
SHMT2-231ENST00000557433 POLR3AO14802 1390 aaPredicted RBP21.05■□□□□ 0.96
SHMT2-231ENST00000557433 MAP3K4Q9Y6R4 1608 aa21.04■□□□□ 0.96
SHMT2-231ENST00000557433 MYO3AQ8NEV4 1616 aa21.03■□□□□ 0.96
SHMT2-231ENST00000557433 APAF1O14727 1248 aa21.03■□□□□ 0.96
SHMT2-231ENST00000557433 ERVK-7P63135 1459 aa21.02■□□□□ 0.96
SHMT2-231ENST00000557433 IL27Q8NEV9 243 aa21.01■□□□□ 0.95
SHMT2-231ENST00000557433 CENPJQ9HC77 1338 aaPredicted RBP20.99■□□□□ 0.95
SHMT2-231ENST00000557433 INO80Q9ULG1 1556 aaPredicted RBP20.99■□□□□ 0.95
SHMT2-231ENST00000557433 RGS3P49796 1198 aa20.98■□□□□ 0.95
SHMT2-231ENST00000557433 NCBP3Q53F19 620 aaKnown RBP20.98■□□□□ 0.95
SHMT2-231ENST00000557433 CCDC146Q8IYE0 955 aa20.98■□□□□ 0.95
SHMT2-231ENST00000557433 ABCA6Q8N139 1617 aa20.97■□□□□ 0.95
SHMT2-231ENST00000557433 NRXN1Q9ULB1 1477 aa20.97■□□□□ 0.95
SHMT2-231ENST00000557433 ATP7AQ04656 1500 aa20.97■□□□□ 0.95
SHMT2-231ENST00000557433 CLUAP1Q96AJ1 413 aa20.96■□□□□ 0.95
SHMT2-231ENST00000557433 SPINK5Q9NQ38 1064 aaPredicted RBP20.96■□□□□ 0.95
SHMT2-231ENST00000557433 SETBP1Q9Y6X0 1596 aa20.96■□□□□ 0.95
SHMT2-231ENST00000557433 BCAR3O75815 825 aa20.96■□□□□ 0.95
SHMT2-231ENST00000557433 ERCC6L2Q5T890 1561 aa20.95■□□□□ 0.94
SHMT2-231ENST00000557433 BECN1Q14457 450 aa20.95■□□□□ 0.94
SHMT2-231ENST00000557433 IFT172Q9UG01 1749 aa20.95■□□□□ 0.94
SHMT2-231ENST00000557433 SLC4A3P48751 1232 aa20.94■□□□□ 0.94
SHMT2-231ENST00000557433 KIF1BO60333 1816 aa20.94■□□□□ 0.94
SHMT2-231ENST00000557433 PMFBP1Q8TBY8 1022 aa20.94■□□□□ 0.94
SHMT2-231ENST00000557433 WWC1Q8IX03 1113 aa20.93■□□□□ 0.94
SHMT2-231ENST00000557433 FRAT1Q92837 279 aaPredicted RBP20.93■□□□□ 0.94
SHMT2-231ENST00000557433 CARD14Q9BXL6 1004 aa20.92■□□□□ 0.94
SHMT2-231ENST00000557433 USP32Q8NFA0 1604 aa20.91■□□□□ 0.94
SHMT2-231ENST00000557433 IGHDP01880 384 aa20.91■□□□□ 0.94
SHMT2-231ENST00000557433 ABCA9Q8IUA7 1624 aa20.91■□□□□ 0.94
SHMT2-231ENST00000557433 CANXP27824 592 aaKnown RBP20.9■□□□□ 0.94
SHMT2-231ENST00000557433 WDR63Q8IWG1 891 aa20.9■□□□□ 0.94
SHMT2-231ENST00000557433 EFCAB6Q5THR3 1501 aa20.9■□□□□ 0.94
SHMT2-231ENST00000557433 LMTK2Q8IWU2 1503 aa20.9■□□□□ 0.94
SHMT2-231ENST00000557433 AFAP1Q8N556 730 aa20.9■□□□□ 0.94
SHMT2-231ENST00000557433 RUNDC1Q96C34 613 aa20.9■□□□□ 0.94
SHMT2-231ENST00000557433 USP19O94966 1318 aa20.89■□□□□ 0.94
SHMT2-231ENST00000557433 CCDC27Q2M243 656 aa20.89■□□□□ 0.93
SHMT2-231ENST00000557433 CFAP70Q5T0N1 1121 aa20.89■□□□□ 0.93
SHMT2-231ENST00000557433 MROH1Q8NDA8 1641 aa20.89■□□□□ 0.93
SHMT2-231ENST00000557433 FANCAO15360 1455 aa20.89■□□□□ 0.93
SHMT2-231ENST00000557433 IQSEC2Q5JU85 1478 aa20.89■□□□□ 0.93
SHMT2-231ENST00000557433 PHF23Q9BUL5 403 aaPredicted RBP20.88■□□□□ 0.93
SHMT2-231ENST00000557433 SHPRHQ149N8 1683 aa20.88■□□□□ 0.93
SHMT2-231ENST00000557433 UPF2Q9HAU5 1272 aaKnown RBP20.86■□□□□ 0.93
SHMT2-231ENST00000557433 FRAT2O75474 233 aaPredicted RBP20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms